Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00071 and OHPLBJKB_00072 overlap by 8 nucleotides OHPLBJKB_00072 and OHPLBJKB_00073 are separated by 15 nucleotides
OHPLBJKB_00071: OHPLBJKB_00071 - Lipopolysaccharide core biosynthesis protein RfaG, at 74,248 to 75,372
_00071
OHPLBJKB_00072: OHPLBJKB_00072 - Lipopolysaccharide core heptose(I) kinase RfaP, at 75,365 to 76,162
_00072
OHPLBJKB_00073: OHPLBJKB_00073 - hypothetical protein, at 76,178 to 77,194
_00073
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1 at 74.836 kb on + strand, within OHPLBJKB_00071 at 74.836 kb on + strand, within OHPLBJKB_00071 at 74.840 kb on + strand, within OHPLBJKB_00071 at 74.840 kb on + strand, within OHPLBJKB_00071 at 75.317 kb on + strand at 75.317 kb on + strand at 75.319 kb on + strand at 75.427 kb on + strand at 75.503 kb on + strand, within OHPLBJKB_00072 at 75.543 kb on + strand, within OHPLBJKB_00072 at 75.579 kb on + strand, within OHPLBJKB_00072 at 75.637 kb on + strand, within OHPLBJKB_00072 at 75.637 kb on + strand, within OHPLBJKB_00072 at 75.637 kb on + strand, within OHPLBJKB_00072 at 75.637 kb on + strand, within OHPLBJKB_00072 at 75.641 kb on + strand, within OHPLBJKB_00072 at 75.641 kb on + strand, within OHPLBJKB_00072 at 75.723 kb on + strand, within OHPLBJKB_00072 at 75.790 kb on + strand, within OHPLBJKB_00072 at 75.790 kb on + strand, within OHPLBJKB_00072 at 75.854 kb on + strand, within OHPLBJKB_00072 at 75.854 kb on + strand, within OHPLBJKB_00072 at 75.854 kb on + strand, within OHPLBJKB_00072 at 75.856 kb on + strand, within OHPLBJKB_00072 at 75.856 kb on + strand, within OHPLBJKB_00072 at 75.856 kb on + strand, within OHPLBJKB_00072 at 75.856 kb on + strand, within OHPLBJKB_00072 at 76.339 kb on + strand, within OHPLBJKB_00073 at 76.663 kb on + strand, within OHPLBJKB_00073
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 74,836 + OHPLBJKB_00071 0.52 +1.3 74,836 + OHPLBJKB_00071 0.52 +0.7 74,840 + OHPLBJKB_00071 0.53 -2.1 74,840 + OHPLBJKB_00071 0.53 -1.4 75,317 + -2.0 75,317 + -1.5 75,319 + -0.7 75,427 + +0.3 75,503 + OHPLBJKB_00072 0.17 -1.3 75,543 + OHPLBJKB_00072 0.22 -1.3 75,579 + OHPLBJKB_00072 0.27 -0.3 75,637 + OHPLBJKB_00072 0.34 -0.5 75,637 + OHPLBJKB_00072 0.34 +0.1 75,637 + OHPLBJKB_00072 0.34 -0.0 75,637 + OHPLBJKB_00072 0.34 +0.3 75,641 + OHPLBJKB_00072 0.35 -0.3 75,641 + OHPLBJKB_00072 0.35 -0.0 75,723 + OHPLBJKB_00072 0.45 -1.4 75,790 + OHPLBJKB_00072 0.53 -0.0 75,790 + OHPLBJKB_00072 0.53 +0.3 75,854 + OHPLBJKB_00072 0.61 -2.2 75,854 + OHPLBJKB_00072 0.61 -1.5 75,854 + OHPLBJKB_00072 0.61 -0.0 75,856 + OHPLBJKB_00072 0.62 -0.7 75,856 + OHPLBJKB_00072 0.62 -0.3 75,856 + OHPLBJKB_00072 0.62 +0.3 75,856 + OHPLBJKB_00072 0.62 -0.0 76,339 + OHPLBJKB_00073 0.16 -0.3 76,663 + OHPLBJKB_00073 0.48 -0.5
Or see this region's nucleotide sequence