Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00049 and OHPLBJKB_00050 are separated by 5 nucleotides OHPLBJKB_00050 and OHPLBJKB_00051 are separated by 39 nucleotides OHPLBJKB_00051 and OHPLBJKB_00052 are separated by 18 nucleotides OHPLBJKB_00052 and OHPLBJKB_00053 are separated by 54 nucleotides
OHPLBJKB_00049: OHPLBJKB_00049 - ATP-dependent DNA helicase RecG, at 54,027 to 56,108
_00049
OHPLBJKB_00050: OHPLBJKB_00050 - 'tRNA (guanosine(18)-2'-O)-methyltransferase' transl_table=11, at 56,114 to 56,770
_00050
OHPLBJKB_00051: OHPLBJKB_00051 - Bifunctional (p)ppGpp synthase/hydrolase SpoT, at 56,810 to 58,918
_00051
OHPLBJKB_00052: OHPLBJKB_00052 - DNA-directed RNA polymerase subunit omega, at 58,937 to 59,212
_00052
OHPLBJKB_00053: OHPLBJKB_00053 - Guanylate kinase, at 59,267 to 59,890
_00053
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -2
-1
0
1 at 55.892 kb on + strand, within OHPLBJKB_00049 at 55.893 kb on - strand, within OHPLBJKB_00049 at 55.893 kb on - strand, within OHPLBJKB_00049 at 55.927 kb on + strand at 55.928 kb on - strand at 55.941 kb on + strand at 55.941 kb on + strand at 55.941 kb on + strand at 55.942 kb on - strand at 55.995 kb on + strand at 55.995 kb on + strand at 55.995 kb on + strand at 55.995 kb on + strand at 55.995 kb on + strand at 55.995 kb on + strand at 55.995 kb on + strand at 55.995 kb on + strand at 55.996 kb on - strand at 55.996 kb on - strand at 55.996 kb on - strand at 55.996 kb on - strand at 55.996 kb on - strand at 55.996 kb on - strand at 55.996 kb on - strand at 56.001 kb on + strand at 56.015 kb on + strand at 56.042 kb on + strand at 56.045 kb on + strand at 56.045 kb on + strand at 56.045 kb on + strand at 56.045 kb on + strand at 56.046 kb on - strand at 56.046 kb on - strand at 56.092 kb on - strand at 56.115 kb on + strand at 56.115 kb on + strand at 56.115 kb on + strand at 56.115 kb on + strand at 56.131 kb on + strand at 56.132 kb on - strand at 56.132 kb on - strand at 56.132 kb on - strand at 56.134 kb on + strand at 56.292 kb on + strand, within OHPLBJKB_00050 at 56.292 kb on + strand, within OHPLBJKB_00050 at 56.292 kb on + strand, within OHPLBJKB_00050 at 56.292 kb on + strand, within OHPLBJKB_00050 at 56.292 kb on + strand, within OHPLBJKB_00050 at 56.292 kb on + strand, within OHPLBJKB_00050 at 56.292 kb on + strand, within OHPLBJKB_00050 at 56.292 kb on + strand, within OHPLBJKB_00050 at 56.293 kb on - strand, within OHPLBJKB_00050 at 56.293 kb on - strand, within OHPLBJKB_00050 at 56.293 kb on - strand, within OHPLBJKB_00050 at 56.293 kb on - strand, within OHPLBJKB_00050 at 56.293 kb on - strand, within OHPLBJKB_00050 at 56.476 kb on - strand, within OHPLBJKB_00050 at 56.476 kb on - strand, within OHPLBJKB_00050 at 56.591 kb on + strand, within OHPLBJKB_00050 at 56.592 kb on - strand, within OHPLBJKB_00050 at 56.602 kb on + strand, within OHPLBJKB_00050 at 56.603 kb on - strand, within OHPLBJKB_00050 at 56.603 kb on - strand, within OHPLBJKB_00050 at 56.606 kb on - strand, within OHPLBJKB_00050 at 56.669 kb on + strand, within OHPLBJKB_00050 at 56.669 kb on + strand, within OHPLBJKB_00050 at 56.669 kb on + strand, within OHPLBJKB_00050 at 56.670 kb on - strand, within OHPLBJKB_00050 at 56.787 kb on + strand at 56.787 kb on + strand at 56.804 kb on - strand at 56.804 kb on - strand at 56.812 kb on - strand at 56.833 kb on + strand at 56.870 kb on - strand at 56.977 kb on + strand at 56.978 kb on - strand at 56.978 kb on - strand at 57.082 kb on + strand, within OHPLBJKB_00051 at 57.082 kb on + strand, within OHPLBJKB_00051 at 57.082 kb on + strand, within OHPLBJKB_00051 at 57.083 kb on - strand, within OHPLBJKB_00051 at 57.118 kb on + strand, within OHPLBJKB_00051 at 57.119 kb on - strand, within OHPLBJKB_00051 at 57.191 kb on - strand, within OHPLBJKB_00051 at 57.397 kb on + strand, within OHPLBJKB_00051 at 57.470 kb on + strand, within OHPLBJKB_00051 at 59.070 kb on - strand, within OHPLBJKB_00052 at 59.070 kb on - strand, within OHPLBJKB_00052 at 59.118 kb on - strand, within OHPLBJKB_00052 at 59.202 kb on - strand at 59.213 kb on - strand at 59.213 kb on - strand at 59.213 kb on - strand at 59.213 kb on - strand at 59.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 55,892 + OHPLBJKB_00049 0.90 -1.0 55,893 - OHPLBJKB_00049 0.90 -2.2 55,893 - OHPLBJKB_00049 0.90 -1.4 55,927 + -0.1 55,928 - +0.4 55,941 + +0.7 55,941 + +1.0 55,941 + +0.1 55,942 - -0.6 55,995 + -0.7 55,995 + +0.4 55,995 + +0.1 55,995 + -0.5 55,995 + +0.2 55,995 + -0.3 55,995 + -1.1 55,995 + -0.4 55,996 - -0.5 55,996 - -1.0 55,996 - -0.2 55,996 - +0.9 55,996 - -0.7 55,996 - +0.9 55,996 - -1.4 56,001 + -0.3 56,015 + -0.2 56,042 + +1.2 56,045 + +1.7 56,045 + -0.0 56,045 + +0.4 56,045 + -1.5 56,046 - -0.2 56,046 - +0.5 56,092 - +0.4 56,115 + +1.7 56,115 + -1.6 56,115 + +1.0 56,115 + -0.4 56,131 + -0.4 56,132 - -0.3 56,132 - -0.5 56,132 - -0.8 56,134 + +0.7 56,292 + OHPLBJKB_00050 0.27 +0.0 56,292 + OHPLBJKB_00050 0.27 +0.5 56,292 + OHPLBJKB_00050 0.27 -0.1 56,292 + OHPLBJKB_00050 0.27 -0.1 56,292 + OHPLBJKB_00050 0.27 +0.4 56,292 + OHPLBJKB_00050 0.27 -0.1 56,292 + OHPLBJKB_00050 0.27 +1.2 56,292 + OHPLBJKB_00050 0.27 -1.5 56,293 - OHPLBJKB_00050 0.27 +0.1 56,293 - OHPLBJKB_00050 0.27 +0.2 56,293 - OHPLBJKB_00050 0.27 -1.1 56,293 - OHPLBJKB_00050 0.27 -0.7 56,293 - OHPLBJKB_00050 0.27 -0.3 56,476 - OHPLBJKB_00050 0.55 -0.8 56,476 - OHPLBJKB_00050 0.55 +0.1 56,591 + OHPLBJKB_00050 0.73 -0.0 56,592 - OHPLBJKB_00050 0.73 +0.2 56,602 + OHPLBJKB_00050 0.74 -0.1 56,603 - OHPLBJKB_00050 0.74 -0.3 56,603 - OHPLBJKB_00050 0.74 +0.8 56,606 - OHPLBJKB_00050 0.75 -0.5 56,669 + OHPLBJKB_00050 0.84 -0.1 56,669 + OHPLBJKB_00050 0.84 -1.0 56,669 + OHPLBJKB_00050 0.84 +0.4 56,670 - OHPLBJKB_00050 0.85 +0.3 56,787 + -0.2 56,787 + -0.4 56,804 - -0.9 56,804 - -0.0 56,812 - -1.7 56,833 + -1.1 56,870 - +0.6 56,977 + +0.4 56,978 - +0.2 56,978 - +0.5 57,082 + OHPLBJKB_00051 0.13 -0.3 57,082 + OHPLBJKB_00051 0.13 -0.5 57,082 + OHPLBJKB_00051 0.13 -1.8 57,083 - OHPLBJKB_00051 0.13 -0.1 57,118 + OHPLBJKB_00051 0.15 -1.6 57,119 - OHPLBJKB_00051 0.15 +0.9 57,191 - OHPLBJKB_00051 0.18 -0.1 57,397 + OHPLBJKB_00051 0.28 -2.4 57,470 + OHPLBJKB_00051 0.31 -1.0 59,070 - OHPLBJKB_00052 0.48 +0.6 59,070 - OHPLBJKB_00052 0.48 -0.6 59,118 - OHPLBJKB_00052 0.66 -1.0 59,202 - -0.6 59,213 - -1.2 59,213 - -1.2 59,213 - -0.9 59,213 - +0.7 59,217 - +0.1
Or see this region's nucleotide sequence