Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03990

Experiment: LB 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03989 and BACOVA_03990 overlap by 1 nucleotidesBACOVA_03990 and BACOVA_03991 are separated by 72 nucleotides BACOVA_03989: BACOVA_03989 - PAS domain S-box protein, at 322,776 to 325,202 _03989 BACOVA_03990: BACOVA_03990 - hypothetical protein, at 325,202 to 325,396 _03990 BACOVA_03991: BACOVA_03991 - glycosyltransferase, group 2 family protein, at 325,469 to 326,683 _03991 Position (kb) 325 326Strain fitness (log2 ratio) -2 -1 0 1 2at 324.251 kb on + strand, within BACOVA_03989at 324.340 kb on + strand, within BACOVA_03989at 324.341 kb on - strand, within BACOVA_03989at 324.373 kb on + strand, within BACOVA_03989at 324.381 kb on - strand, within BACOVA_03989at 324.399 kb on - strand, within BACOVA_03989at 324.437 kb on + strand, within BACOVA_03989at 324.454 kb on - strand, within BACOVA_03989at 324.465 kb on - strand, within BACOVA_03989at 324.498 kb on - strand, within BACOVA_03989at 324.587 kb on + strand, within BACOVA_03989at 324.654 kb on - strand, within BACOVA_03989at 324.654 kb on - strand, within BACOVA_03989at 324.679 kb on - strand, within BACOVA_03989at 324.698 kb on + strand, within BACOVA_03989at 324.700 kb on + strand, within BACOVA_03989at 324.746 kb on - strand, within BACOVA_03989at 324.763 kb on + strand, within BACOVA_03989at 324.932 kb on + strand, within BACOVA_03989at 324.933 kb on - strand, within BACOVA_03989at 325.167 kb on - strandat 325.167 kb on - strandat 325.218 kb on - strandat 325.218 kb on - strandat 325.218 kb on - strandat 325.328 kb on + strand, within BACOVA_03990at 325.329 kb on - strand, within BACOVA_03990at 325.329 kb on - strand, within BACOVA_03990at 325.329 kb on - strand, within BACOVA_03990at 325.336 kb on + strand, within BACOVA_03990at 325.336 kb on + strand, within BACOVA_03990at 325.382 kb on + strandat 325.383 kb on - strandat 325.383 kb on - strandat 325.383 kb on - strandat 325.408 kb on - strandat 325.425 kb on + strandat 325.425 kb on + strandat 325.426 kb on - strandat 325.434 kb on + strandat 325.438 kb on + strandat 325.439 kb on - strandat 325.457 kb on + strandat 325.470 kb on + strandat 325.572 kb on + strandat 325.598 kb on + strand, within BACOVA_03991at 325.617 kb on + strand, within BACOVA_03991at 325.617 kb on + strand, within BACOVA_03991at 325.618 kb on - strand, within BACOVA_03991at 325.621 kb on - strand, within BACOVA_03991at 325.675 kb on - strand, within BACOVA_03991at 325.680 kb on - strand, within BACOVA_03991at 325.680 kb on - strand, within BACOVA_03991at 325.712 kb on - strand, within BACOVA_03991at 325.748 kb on - strand, within BACOVA_03991at 325.750 kb on + strand, within BACOVA_03991at 325.751 kb on - strand, within BACOVA_03991at 325.779 kb on + strand, within BACOVA_03991at 325.793 kb on + strand, within BACOVA_03991at 325.838 kb on - strand, within BACOVA_03991at 325.918 kb on - strand, within BACOVA_03991at 325.918 kb on - strand, within BACOVA_03991at 325.928 kb on - strand, within BACOVA_03991at 326.027 kb on + strand, within BACOVA_03991at 326.065 kb on - strand, within BACOVA_03991at 326.109 kb on + strand, within BACOVA_03991at 326.110 kb on - strand, within BACOVA_03991at 326.337 kb on - strand, within BACOVA_03991

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1 x (C) complex media
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324,251 + BACOVA_03989 0.61 +0.1
324,340 + BACOVA_03989 0.64 -0.7
324,341 - BACOVA_03989 0.64 +0.4
324,373 + BACOVA_03989 0.66 +0.8
324,381 - BACOVA_03989 0.66 +1.3
324,399 - BACOVA_03989 0.67 -0.6
324,437 + BACOVA_03989 0.68 +0.1
324,454 - BACOVA_03989 0.69 +0.7
324,465 - BACOVA_03989 0.70 +0.0
324,498 - BACOVA_03989 0.71 +0.5
324,587 + BACOVA_03989 0.75 +0.9
324,654 - BACOVA_03989 0.77 +0.5
324,654 - BACOVA_03989 0.77 +1.3
324,679 - BACOVA_03989 0.78 +0.6
324,698 + BACOVA_03989 0.79 -0.1
324,700 + BACOVA_03989 0.79 +0.1
324,746 - BACOVA_03989 0.81 -0.9
324,763 + BACOVA_03989 0.82 -0.7
324,932 + BACOVA_03989 0.89 -0.4
324,933 - BACOVA_03989 0.89 -0.7
325,167 - -1.1
325,167 - -0.4
325,218 - +0.5
325,218 - +0.8
325,218 - -1.0
325,328 + BACOVA_03990 0.65 +1.3
325,329 - BACOVA_03990 0.65 -0.7
325,329 - BACOVA_03990 0.65 -0.7
325,329 - BACOVA_03990 0.65 +0.4
325,336 + BACOVA_03990 0.69 -0.8
325,336 + BACOVA_03990 0.69 -0.1
325,382 + -0.3
325,383 - +0.4
325,383 - -0.8
325,383 - -0.6
325,408 - +0.6
325,425 + +0.5
325,425 + +0.7
325,426 - +0.9
325,434 + +0.6
325,438 + +1.2
325,439 - -0.8
325,457 + -0.3
325,470 + -0.0
325,572 + -0.3
325,598 + BACOVA_03991 0.11 -0.7
325,617 + BACOVA_03991 0.12 -1.9
325,617 + BACOVA_03991 0.12 -0.4
325,618 - BACOVA_03991 0.12 +0.7
325,621 - BACOVA_03991 0.13 -0.3
325,675 - BACOVA_03991 0.17 +2.3
325,680 - BACOVA_03991 0.17 -0.7
325,680 - BACOVA_03991 0.17 +2.1
325,712 - BACOVA_03991 0.20 +0.4
325,748 - BACOVA_03991 0.23 +0.4
325,750 + BACOVA_03991 0.23 +0.6
325,751 - BACOVA_03991 0.23 +2.1
325,779 + BACOVA_03991 0.26 +0.3
325,793 + BACOVA_03991 0.27 -0.2
325,838 - BACOVA_03991 0.30 -0.5
325,918 - BACOVA_03991 0.37 -0.6
325,918 - BACOVA_03991 0.37 -0.0
325,928 - BACOVA_03991 0.38 +0.0
326,027 + BACOVA_03991 0.46 -0.0
326,065 - BACOVA_03991 0.49 +0.3
326,109 + BACOVA_03991 0.53 -0.1
326,110 - BACOVA_03991 0.53 +1.5
326,337 - BACOVA_03991 0.71 -0.9

Or see this region's nucleotide sequence