Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02808

Experiment: LB 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02807 and BACOVA_02808 are separated by 12 nucleotidesBACOVA_02808 and BACOVA_02809 are separated by 21 nucleotides BACOVA_02807: BACOVA_02807 - hypothetical protein, at 274,229 to 275,854 _02807 BACOVA_02808: BACOVA_02808 - hypothetical protein, at 275,867 to 276,277 _02808 BACOVA_02809: BACOVA_02809 - hypothetical protein, at 276,299 to 277,957 _02809 Position (kb) 275 276 277Strain fitness (log2 ratio) -3 -2 -1 0 1at 275.083 kb on + strand, within BACOVA_02807at 275.093 kb on - strand, within BACOVA_02807at 275.116 kb on + strand, within BACOVA_02807at 275.117 kb on - strand, within BACOVA_02807at 275.129 kb on - strand, within BACOVA_02807at 275.129 kb on - strand, within BACOVA_02807at 275.158 kb on + strand, within BACOVA_02807at 275.174 kb on - strand, within BACOVA_02807at 275.198 kb on - strand, within BACOVA_02807at 275.198 kb on - strand, within BACOVA_02807at 275.217 kb on - strand, within BACOVA_02807at 275.243 kb on + strand, within BACOVA_02807at 275.258 kb on + strand, within BACOVA_02807at 275.258 kb on + strand, within BACOVA_02807at 275.296 kb on - strand, within BACOVA_02807at 275.296 kb on - strand, within BACOVA_02807at 275.305 kb on + strand, within BACOVA_02807at 275.306 kb on - strand, within BACOVA_02807at 275.306 kb on - strand, within BACOVA_02807at 275.360 kb on - strand, within BACOVA_02807at 275.488 kb on + strand, within BACOVA_02807at 275.546 kb on - strand, within BACOVA_02807at 275.592 kb on + strand, within BACOVA_02807at 275.671 kb on + strand, within BACOVA_02807at 275.677 kb on + strand, within BACOVA_02807at 275.677 kb on + strand, within BACOVA_02807at 275.678 kb on - strand, within BACOVA_02807at 275.685 kb on + strand, within BACOVA_02807at 275.727 kb on + strandat 275.740 kb on + strandat 275.740 kb on + strandat 275.744 kb on - strandat 275.756 kb on - strandat 275.831 kb on + strandat 275.836 kb on + strandat 275.837 kb on - strandat 275.858 kb on - strandat 275.858 kb on - strandat 275.868 kb on + strandat 275.888 kb on + strandat 275.892 kb on - strandat 275.892 kb on - strandat 275.893 kb on + strandat 275.936 kb on - strand, within BACOVA_02808at 275.943 kb on - strand, within BACOVA_02808at 276.094 kb on + strand, within BACOVA_02808at 276.100 kb on + strand, within BACOVA_02808at 276.155 kb on - strand, within BACOVA_02808at 276.157 kb on - strand, within BACOVA_02808at 276.172 kb on + strand, within BACOVA_02808at 276.172 kb on + strand, within BACOVA_02808at 276.173 kb on - strand, within BACOVA_02808at 276.183 kb on - strand, within BACOVA_02808at 276.213 kb on + strand, within BACOVA_02808at 276.260 kb on + strandat 276.261 kb on - strandat 276.261 kb on - strandat 276.261 kb on - strandat 276.264 kb on + strandat 276.265 kb on - strandat 276.265 kb on - strandat 276.266 kb on + strandat 276.267 kb on - strandat 276.269 kb on + strandat 276.296 kb on + strandat 276.301 kb on - strandat 276.307 kb on + strandat 276.308 kb on - strandat 276.345 kb on + strandat 276.365 kb on + strandat 276.385 kb on + strandat 276.385 kb on + strandat 276.392 kb on + strandat 276.394 kb on + strandat 276.395 kb on - strandat 276.420 kb on - strandat 276.420 kb on - strandat 276.425 kb on - strandat 276.427 kb on - strandat 276.469 kb on + strand, within BACOVA_02809at 276.470 kb on - strand, within BACOVA_02809at 276.470 kb on - strand, within BACOVA_02809at 276.530 kb on - strand, within BACOVA_02809at 276.575 kb on + strand, within BACOVA_02809at 276.582 kb on + strand, within BACOVA_02809at 276.582 kb on + strand, within BACOVA_02809at 276.582 kb on + strand, within BACOVA_02809at 276.582 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.616 kb on + strand, within BACOVA_02809at 276.617 kb on - strand, within BACOVA_02809at 276.674 kb on + strand, within BACOVA_02809at 276.683 kb on + strand, within BACOVA_02809at 276.683 kb on + strand, within BACOVA_02809at 276.684 kb on + strand, within BACOVA_02809at 276.684 kb on - strand, within BACOVA_02809at 276.684 kb on - strand, within BACOVA_02809at 276.686 kb on - strand, within BACOVA_02809at 276.694 kb on + strand, within BACOVA_02809at 276.789 kb on + strand, within BACOVA_02809at 276.792 kb on - strand, within BACOVA_02809at 276.810 kb on + strand, within BACOVA_02809at 276.811 kb on - strand, within BACOVA_02809at 276.833 kb on + strand, within BACOVA_02809at 276.838 kb on - strand, within BACOVA_02809at 276.888 kb on + strand, within BACOVA_02809at 276.920 kb on - strand, within BACOVA_02809at 276.940 kb on - strand, within BACOVA_02809at 276.943 kb on + strand, within BACOVA_02809at 276.943 kb on + strand, within BACOVA_02809at 276.943 kb on + strand, within BACOVA_02809at 276.944 kb on - strand, within BACOVA_02809at 276.944 kb on - strand, within BACOVA_02809at 276.948 kb on + strand, within BACOVA_02809at 276.948 kb on + strand, within BACOVA_02809at 276.959 kb on + strand, within BACOVA_02809at 276.976 kb on + strand, within BACOVA_02809at 277.075 kb on + strand, within BACOVA_02809at 277.166 kb on + strand, within BACOVA_02809at 277.167 kb on - strand, within BACOVA_02809at 277.167 kb on - strand, within BACOVA_02809at 277.202 kb on + strand, within BACOVA_02809at 277.209 kb on + strand, within BACOVA_02809at 277.210 kb on - strand, within BACOVA_02809at 277.226 kb on - strand, within BACOVA_02809at 277.271 kb on + strand, within BACOVA_02809

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 1 x (C) complex media
remove
275,083 + BACOVA_02807 0.53 +0.1
275,093 - BACOVA_02807 0.53 +0.5
275,116 + BACOVA_02807 0.55 -0.9
275,117 - BACOVA_02807 0.55 -0.4
275,129 - BACOVA_02807 0.55 -0.4
275,129 - BACOVA_02807 0.55 +0.5
275,158 + BACOVA_02807 0.57 +0.5
275,174 - BACOVA_02807 0.58 -0.3
275,198 - BACOVA_02807 0.60 -0.0
275,198 - BACOVA_02807 0.60 +0.7
275,217 - BACOVA_02807 0.61 +0.1
275,243 + BACOVA_02807 0.62 -0.2
275,258 + BACOVA_02807 0.63 -0.2
275,258 + BACOVA_02807 0.63 -1.2
275,296 - BACOVA_02807 0.66 +0.1
275,296 - BACOVA_02807 0.66 -1.1
275,305 + BACOVA_02807 0.66 -0.7
275,306 - BACOVA_02807 0.66 -0.0
275,306 - BACOVA_02807 0.66 -0.3
275,360 - BACOVA_02807 0.70 +0.3
275,488 + BACOVA_02807 0.77 -0.8
275,546 - BACOVA_02807 0.81 -1.0
275,592 + BACOVA_02807 0.84 -0.7
275,671 + BACOVA_02807 0.89 -1.1
275,677 + BACOVA_02807 0.89 -0.5
275,677 + BACOVA_02807 0.89 +0.2
275,678 - BACOVA_02807 0.89 +0.3
275,685 + BACOVA_02807 0.90 +0.5
275,727 + -0.6
275,740 + +0.2
275,740 + +0.7
275,744 - +0.2
275,756 - -0.2
275,831 + -1.7
275,836 + -0.4
275,837 - -0.6
275,858 - +0.8
275,858 - -0.3
275,868 + -0.4
275,888 + +0.5
275,892 - +0.3
275,892 - -0.5
275,893 + -1.0
275,936 - BACOVA_02808 0.17 -2.7
275,943 - BACOVA_02808 0.18 -0.0
276,094 + BACOVA_02808 0.55 -0.3
276,100 + BACOVA_02808 0.57 -0.3
276,155 - BACOVA_02808 0.70 -0.3
276,157 - BACOVA_02808 0.71 -2.5
276,172 + BACOVA_02808 0.74 +0.5
276,172 + BACOVA_02808 0.74 +0.7
276,173 - BACOVA_02808 0.74 -0.7
276,183 - BACOVA_02808 0.77 +0.3
276,213 + BACOVA_02808 0.84 -0.1
276,260 + +0.1
276,261 - -0.7
276,261 - -0.5
276,261 - +1.2
276,264 + +0.9
276,265 - -0.4
276,265 - +0.2
276,266 + +0.3
276,267 - -1.3
276,269 + -2.7
276,296 + +1.2
276,301 - -1.9
276,307 + +0.0
276,308 - -2.0
276,345 + -0.4
276,365 + -0.6
276,385 + -0.8
276,385 + +0.5
276,392 + -0.0
276,394 + +1.1
276,395 - -0.9
276,420 - +0.1
276,420 - -1.1
276,425 - -2.0
276,427 - -0.0
276,469 + BACOVA_02809 0.10 +0.5
276,470 - BACOVA_02809 0.10 -3.1
276,470 - BACOVA_02809 0.10 -0.6
276,530 - BACOVA_02809 0.14 +0.8
276,575 + BACOVA_02809 0.17 +1.7
276,582 + BACOVA_02809 0.17 +0.4
276,582 + BACOVA_02809 0.17 +0.4
276,582 + BACOVA_02809 0.17 -0.9
276,582 - BACOVA_02809 0.17 -0.7
276,583 - BACOVA_02809 0.17 -0.1
276,583 - BACOVA_02809 0.17 -0.7
276,583 - BACOVA_02809 0.17 -0.2
276,583 - BACOVA_02809 0.17 -1.3
276,583 - BACOVA_02809 0.17 -2.1
276,583 - BACOVA_02809 0.17 -1.4
276,616 + BACOVA_02809 0.19 -1.1
276,617 - BACOVA_02809 0.19 +0.2
276,674 + BACOVA_02809 0.23 -0.5
276,683 + BACOVA_02809 0.23 +0.1
276,683 + BACOVA_02809 0.23 -1.4
276,684 + BACOVA_02809 0.23 -0.8
276,684 - BACOVA_02809 0.23 -0.8
276,684 - BACOVA_02809 0.23 -0.2
276,686 - BACOVA_02809 0.23 -0.0
276,694 + BACOVA_02809 0.24 +0.1
276,789 + BACOVA_02809 0.30 -0.2
276,792 - BACOVA_02809 0.30 -0.9
276,810 + BACOVA_02809 0.31 +0.9
276,811 - BACOVA_02809 0.31 -0.3
276,833 + BACOVA_02809 0.32 -0.1
276,838 - BACOVA_02809 0.32 -1.1
276,888 + BACOVA_02809 0.36 -0.3
276,920 - BACOVA_02809 0.37 +1.1
276,940 - BACOVA_02809 0.39 -1.0
276,943 + BACOVA_02809 0.39 -0.8
276,943 + BACOVA_02809 0.39 -0.6
276,943 + BACOVA_02809 0.39 +0.5
276,944 - BACOVA_02809 0.39 -1.1
276,944 - BACOVA_02809 0.39 -0.4
276,948 + BACOVA_02809 0.39 -0.0
276,948 + BACOVA_02809 0.39 +1.1
276,959 + BACOVA_02809 0.40 +0.2
276,976 + BACOVA_02809 0.41 +0.3
277,075 + BACOVA_02809 0.47 -1.0
277,166 + BACOVA_02809 0.52 -0.2
277,167 - BACOVA_02809 0.52 +0.3
277,167 - BACOVA_02809 0.52 -1.0
277,202 + BACOVA_02809 0.54 +0.6
277,209 + BACOVA_02809 0.55 +0.6
277,210 - BACOVA_02809 0.55 -0.0
277,226 - BACOVA_02809 0.56 -0.0
277,271 + BACOVA_02809 0.59 -0.0

Or see this region's nucleotide sequence