Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02040

Experiment: LB 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02039 and BACOVA_02040 are separated by 14 nucleotidesBACOVA_02040 and BACOVA_02041 are separated by 6 nucleotides BACOVA_02039: BACOVA_02039 - hypothetical protein, at 342,587 to 343,672 _02039 BACOVA_02040: BACOVA_02040 - citrate transporter, at 343,687 to 344,943 _02040 BACOVA_02041: BACOVA_02041 - glycerate kinase, at 344,950 to 346,104 _02041 Position (kb) 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 342.709 kb on + strand, within BACOVA_02039at 342.716 kb on + strand, within BACOVA_02039at 342.775 kb on - strand, within BACOVA_02039at 342.775 kb on - strand, within BACOVA_02039at 342.779 kb on + strand, within BACOVA_02039at 342.849 kb on + strand, within BACOVA_02039at 342.849 kb on + strand, within BACOVA_02039at 342.849 kb on + strand, within BACOVA_02039at 342.850 kb on - strand, within BACOVA_02039at 342.939 kb on + strand, within BACOVA_02039at 342.940 kb on - strand, within BACOVA_02039at 342.940 kb on - strand, within BACOVA_02039at 342.940 kb on - strand, within BACOVA_02039at 342.944 kb on + strand, within BACOVA_02039at 342.973 kb on + strand, within BACOVA_02039at 342.974 kb on - strand, within BACOVA_02039at 342.977 kb on + strand, within BACOVA_02039at 343.029 kb on - strand, within BACOVA_02039at 343.082 kb on - strand, within BACOVA_02039at 343.082 kb on - strand, within BACOVA_02039at 343.085 kb on + strand, within BACOVA_02039at 343.122 kb on + strand, within BACOVA_02039at 343.122 kb on + strand, within BACOVA_02039at 343.123 kb on - strand, within BACOVA_02039at 343.123 kb on - strand, within BACOVA_02039at 343.123 kb on - strand, within BACOVA_02039at 343.133 kb on - strand, within BACOVA_02039at 343.140 kb on - strand, within BACOVA_02039at 343.241 kb on + strand, within BACOVA_02039at 343.272 kb on - strand, within BACOVA_02039at 343.272 kb on - strand, within BACOVA_02039at 343.277 kb on + strand, within BACOVA_02039at 343.277 kb on + strand, within BACOVA_02039at 343.289 kb on - strand, within BACOVA_02039at 343.292 kb on - strand, within BACOVA_02039at 343.319 kb on - strand, within BACOVA_02039at 343.319 kb on - strand, within BACOVA_02039at 343.353 kb on + strand, within BACOVA_02039at 343.354 kb on - strand, within BACOVA_02039at 343.357 kb on - strand, within BACOVA_02039at 343.367 kb on + strand, within BACOVA_02039at 343.368 kb on - strand, within BACOVA_02039at 343.368 kb on - strand, within BACOVA_02039at 343.406 kb on - strand, within BACOVA_02039at 343.413 kb on - strand, within BACOVA_02039at 343.468 kb on + strand, within BACOVA_02039at 343.468 kb on + strand, within BACOVA_02039at 343.468 kb on + strand, within BACOVA_02039at 343.469 kb on - strand, within BACOVA_02039at 343.469 kb on - strand, within BACOVA_02039at 343.469 kb on - strand, within BACOVA_02039at 343.469 kb on - strand, within BACOVA_02039at 343.473 kb on - strand, within BACOVA_02039at 343.482 kb on + strand, within BACOVA_02039at 343.482 kb on + strand, within BACOVA_02039at 343.483 kb on - strand, within BACOVA_02039at 343.507 kb on + strand, within BACOVA_02039at 343.594 kb on + strandat 343.595 kb on - strandat 343.689 kb on - strandat 343.696 kb on + strandat 343.696 kb on + strandat 343.697 kb on - strandat 343.699 kb on + strandat 343.700 kb on - strandat 343.701 kb on + strandat 343.701 kb on + strandat 343.701 kb on + strandat 343.704 kb on - strandat 343.726 kb on + strandat 343.726 kb on + strandat 343.726 kb on + strandat 343.727 kb on - strandat 343.732 kb on + strandat 343.738 kb on + strandat 343.739 kb on - strandat 343.751 kb on + strandat 343.757 kb on - strandat 343.757 kb on - strandat 343.777 kb on - strandat 343.793 kb on - strandat 343.863 kb on + strand, within BACOVA_02040at 343.864 kb on - strand, within BACOVA_02040at 343.864 kb on - strand, within BACOVA_02040at 343.892 kb on - strand, within BACOVA_02040at 343.892 kb on - strand, within BACOVA_02040at 343.893 kb on + strand, within BACOVA_02040at 343.983 kb on + strand, within BACOVA_02040at 344.004 kb on + strand, within BACOVA_02040at 344.004 kb on + strand, within BACOVA_02040at 344.004 kb on + strand, within BACOVA_02040at 344.007 kb on + strand, within BACOVA_02040at 344.008 kb on - strand, within BACOVA_02040at 344.059 kb on + strand, within BACOVA_02040at 344.059 kb on + strand, within BACOVA_02040at 344.059 kb on + strand, within BACOVA_02040at 344.060 kb on - strand, within BACOVA_02040at 344.074 kb on - strand, within BACOVA_02040at 344.126 kb on + strand, within BACOVA_02040at 344.126 kb on + strand, within BACOVA_02040at 344.126 kb on + strand, within BACOVA_02040at 344.127 kb on - strand, within BACOVA_02040at 344.163 kb on + strand, within BACOVA_02040at 344.163 kb on + strand, within BACOVA_02040at 344.169 kb on + strand, within BACOVA_02040at 344.169 kb on + strand, within BACOVA_02040at 344.169 kb on + strand, within BACOVA_02040at 344.170 kb on - strand, within BACOVA_02040at 344.170 kb on - strand, within BACOVA_02040at 344.170 kb on - strand, within BACOVA_02040at 344.179 kb on + strand, within BACOVA_02040at 344.179 kb on + strand, within BACOVA_02040at 344.180 kb on - strand, within BACOVA_02040at 344.237 kb on - strand, within BACOVA_02040at 344.256 kb on + strand, within BACOVA_02040at 344.448 kb on + strand, within BACOVA_02040at 344.466 kb on + strand, within BACOVA_02040at 344.466 kb on + strand, within BACOVA_02040at 344.488 kb on + strand, within BACOVA_02040at 344.488 kb on + strand, within BACOVA_02040at 344.488 kb on + strand, within BACOVA_02040at 344.489 kb on - strand, within BACOVA_02040at 344.493 kb on + strand, within BACOVA_02040at 344.494 kb on - strand, within BACOVA_02040at 344.494 kb on - strand, within BACOVA_02040at 344.494 kb on - strand, within BACOVA_02040at 344.494 kb on - strand, within BACOVA_02040at 344.505 kb on + strand, within BACOVA_02040at 344.505 kb on + strand, within BACOVA_02040at 344.506 kb on - strand, within BACOVA_02040at 344.521 kb on - strand, within BACOVA_02040at 344.564 kb on - strand, within BACOVA_02040at 344.623 kb on - strand, within BACOVA_02040at 344.655 kb on + strand, within BACOVA_02040at 344.655 kb on + strand, within BACOVA_02040at 344.709 kb on + strand, within BACOVA_02040at 344.710 kb on - strand, within BACOVA_02040at 344.722 kb on + strand, within BACOVA_02040at 344.722 kb on + strand, within BACOVA_02040at 344.725 kb on + strand, within BACOVA_02040at 344.728 kb on + strand, within BACOVA_02040at 344.729 kb on - strand, within BACOVA_02040at 344.825 kb on - strandat 344.871 kb on - strandat 344.890 kb on + strandat 344.896 kb on + strandat 344.952 kb on - strandat 344.956 kb on - strandat 345.001 kb on + strandat 345.001 kb on + strandat 345.071 kb on - strand, within BACOVA_02041at 345.090 kb on + strand, within BACOVA_02041at 345.276 kb on + strand, within BACOVA_02041at 345.277 kb on - strand, within BACOVA_02041at 345.277 kb on - strand, within BACOVA_02041at 345.284 kb on - strand, within BACOVA_02041at 345.367 kb on + strand, within BACOVA_02041at 345.367 kb on + strand, within BACOVA_02041at 345.367 kb on + strand, within BACOVA_02041at 345.368 kb on - strand, within BACOVA_02041at 345.368 kb on - strand, within BACOVA_02041at 345.368 kb on - strand, within BACOVA_02041at 345.369 kb on + strand, within BACOVA_02041at 345.369 kb on + strand, within BACOVA_02041at 345.445 kb on - strand, within BACOVA_02041at 345.467 kb on + strand, within BACOVA_02041at 345.467 kb on + strand, within BACOVA_02041at 345.468 kb on - strand, within BACOVA_02041at 345.469 kb on + strand, within BACOVA_02041at 345.469 kb on + strand, within BACOVA_02041at 345.470 kb on - strand, within BACOVA_02041at 345.470 kb on - strand, within BACOVA_02041at 345.470 kb on - strand, within BACOVA_02041at 345.470 kb on - strand, within BACOVA_02041at 345.470 kb on - strand, within BACOVA_02041at 345.470 kb on - strand, within BACOVA_02041at 345.470 kb on - strand, within BACOVA_02041at 345.470 kb on - strand, within BACOVA_02041at 345.473 kb on + strand, within BACOVA_02041at 345.473 kb on + strand, within BACOVA_02041at 345.564 kb on + strand, within BACOVA_02041at 345.565 kb on - strand, within BACOVA_02041at 345.644 kb on - strand, within BACOVA_02041at 345.657 kb on + strand, within BACOVA_02041at 345.658 kb on - strand, within BACOVA_02041at 345.658 kb on - strand, within BACOVA_02041at 345.658 kb on - strand, within BACOVA_02041at 345.661 kb on + strand, within BACOVA_02041at 345.661 kb on + strand, within BACOVA_02041at 345.662 kb on - strand, within BACOVA_02041at 345.662 kb on - strand, within BACOVA_02041at 345.755 kb on + strand, within BACOVA_02041at 345.756 kb on - strand, within BACOVA_02041at 345.756 kb on - strand, within BACOVA_02041at 345.756 kb on - strand, within BACOVA_02041at 345.756 kb on - strand, within BACOVA_02041at 345.763 kb on - strand, within BACOVA_02041at 345.763 kb on - strand, within BACOVA_02041at 345.861 kb on - strand, within BACOVA_02041at 345.935 kb on - strand, within BACOVA_02041

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1 x (C) complex media
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342,709 + BACOVA_02039 0.11 -0.6
342,716 + BACOVA_02039 0.12 +0.3
342,775 - BACOVA_02039 0.17 +0.0
342,775 - BACOVA_02039 0.17 -0.7
342,779 + BACOVA_02039 0.18 +1.5
342,849 + BACOVA_02039 0.24 -0.0
342,849 + BACOVA_02039 0.24 +0.5
342,849 + BACOVA_02039 0.24 +0.2
342,850 - BACOVA_02039 0.24 -0.8
342,939 + BACOVA_02039 0.32 -1.0
342,940 - BACOVA_02039 0.33 +0.6
342,940 - BACOVA_02039 0.33 +0.4
342,940 - BACOVA_02039 0.33 -0.0
342,944 + BACOVA_02039 0.33 -0.9
342,973 + BACOVA_02039 0.36 -1.2
342,974 - BACOVA_02039 0.36 -1.7
342,977 + BACOVA_02039 0.36 -2.0
343,029 - BACOVA_02039 0.41 -0.3
343,082 - BACOVA_02039 0.46 +0.5
343,082 - BACOVA_02039 0.46 -0.0
343,085 + BACOVA_02039 0.46 -0.2
343,122 + BACOVA_02039 0.49 +0.7
343,122 + BACOVA_02039 0.49 -1.1
343,123 - BACOVA_02039 0.49 +0.5
343,123 - BACOVA_02039 0.49 +0.3
343,123 - BACOVA_02039 0.49 -2.2
343,133 - BACOVA_02039 0.50 +0.2
343,140 - BACOVA_02039 0.51 -0.8
343,241 + BACOVA_02039 0.60 -0.1
343,272 - BACOVA_02039 0.63 -1.5
343,272 - BACOVA_02039 0.63 -0.1
343,277 + BACOVA_02039 0.64 -0.1
343,277 + BACOVA_02039 0.64 -0.0
343,289 - BACOVA_02039 0.65 +0.5
343,292 - BACOVA_02039 0.65 -1.4
343,319 - BACOVA_02039 0.67 -0.6
343,319 - BACOVA_02039 0.67 -0.2
343,353 + BACOVA_02039 0.71 -0.0
343,354 - BACOVA_02039 0.71 +0.4
343,357 - BACOVA_02039 0.71 +1.6
343,367 + BACOVA_02039 0.72 +1.1
343,368 - BACOVA_02039 0.72 -0.3
343,368 - BACOVA_02039 0.72 +0.9
343,406 - BACOVA_02039 0.75 +2.1
343,413 - BACOVA_02039 0.76 -1.0
343,468 + BACOVA_02039 0.81 +0.6
343,468 + BACOVA_02039 0.81 -0.3
343,468 + BACOVA_02039 0.81 +0.2
343,469 - BACOVA_02039 0.81 -0.8
343,469 - BACOVA_02039 0.81 -1.6
343,469 - BACOVA_02039 0.81 +0.8
343,469 - BACOVA_02039 0.81 +0.4
343,473 - BACOVA_02039 0.82 -0.0
343,482 + BACOVA_02039 0.82 +0.5
343,482 + BACOVA_02039 0.82 -0.5
343,483 - BACOVA_02039 0.83 +0.2
343,507 + BACOVA_02039 0.85 -0.4
343,594 + +0.5
343,595 - -0.1
343,689 - -0.5
343,696 + +1.2
343,696 + +0.4
343,697 - -0.5
343,699 + -0.3
343,700 - -1.5
343,701 + +0.3
343,701 + +0.8
343,701 + +0.2
343,704 - -1.6
343,726 + -0.2
343,726 + -0.9
343,726 + -0.2
343,727 - -1.0
343,732 + +1.1
343,738 + +0.2
343,739 - -0.6
343,751 + +0.1
343,757 - +0.3
343,757 - -3.4
343,777 - +0.2
343,793 - -0.0
343,863 + BACOVA_02040 0.14 -0.6
343,864 - BACOVA_02040 0.14 -0.0
343,864 - BACOVA_02040 0.14 +0.3
343,892 - BACOVA_02040 0.16 -0.3
343,892 - BACOVA_02040 0.16 -1.6
343,893 + BACOVA_02040 0.16 +0.1
343,983 + BACOVA_02040 0.24 +0.3
344,004 + BACOVA_02040 0.25 -0.1
344,004 + BACOVA_02040 0.25 +0.6
344,004 + BACOVA_02040 0.25 +0.0
344,007 + BACOVA_02040 0.25 +0.3
344,008 - BACOVA_02040 0.26 -1.7
344,059 + BACOVA_02040 0.30 -0.7
344,059 + BACOVA_02040 0.30 -0.9
344,059 + BACOVA_02040 0.30 +0.1
344,060 - BACOVA_02040 0.30 -0.2
344,074 - BACOVA_02040 0.31 +0.7
344,126 + BACOVA_02040 0.35 +0.6
344,126 + BACOVA_02040 0.35 +0.0
344,126 + BACOVA_02040 0.35 -1.0
344,127 - BACOVA_02040 0.35 +0.4
344,163 + BACOVA_02040 0.38 +0.6
344,163 + BACOVA_02040 0.38 -0.0
344,169 + BACOVA_02040 0.38 +0.1
344,169 + BACOVA_02040 0.38 +1.0
344,169 + BACOVA_02040 0.38 +0.9
344,170 - BACOVA_02040 0.38 -0.6
344,170 - BACOVA_02040 0.38 -0.3
344,170 - BACOVA_02040 0.38 +0.7
344,179 + BACOVA_02040 0.39 -0.2
344,179 + BACOVA_02040 0.39 -0.7
344,180 - BACOVA_02040 0.39 -0.3
344,237 - BACOVA_02040 0.44 -1.2
344,256 + BACOVA_02040 0.45 -0.6
344,448 + BACOVA_02040 0.61 -1.1
344,466 + BACOVA_02040 0.62 -0.0
344,466 + BACOVA_02040 0.62 -0.9
344,488 + BACOVA_02040 0.64 -0.3
344,488 + BACOVA_02040 0.64 +1.3
344,488 + BACOVA_02040 0.64 +0.4
344,489 - BACOVA_02040 0.64 -0.3
344,493 + BACOVA_02040 0.64 -1.0
344,494 - BACOVA_02040 0.64 +0.5
344,494 - BACOVA_02040 0.64 -0.0
344,494 - BACOVA_02040 0.64 -1.0
344,494 - BACOVA_02040 0.64 -0.7
344,505 + BACOVA_02040 0.65 -0.6
344,505 + BACOVA_02040 0.65 -0.7
344,506 - BACOVA_02040 0.65 -1.0
344,521 - BACOVA_02040 0.66 -0.9
344,564 - BACOVA_02040 0.70 -1.3
344,623 - BACOVA_02040 0.74 +0.3
344,655 + BACOVA_02040 0.77 -0.1
344,655 + BACOVA_02040 0.77 -1.3
344,709 + BACOVA_02040 0.81 -0.1
344,710 - BACOVA_02040 0.81 -0.6
344,722 + BACOVA_02040 0.82 +0.7
344,722 + BACOVA_02040 0.82 -0.3
344,725 + BACOVA_02040 0.83 +0.3
344,728 + BACOVA_02040 0.83 +0.2
344,729 - BACOVA_02040 0.83 -1.5
344,825 - +0.1
344,871 - +0.7
344,890 + +0.7
344,896 + +0.0
344,952 - +0.4
344,956 - +0.6
345,001 + -0.8
345,001 + -2.7
345,071 - BACOVA_02041 0.10 -0.5
345,090 + BACOVA_02041 0.12 +0.2
345,276 + BACOVA_02041 0.28 -0.1
345,277 - BACOVA_02041 0.28 -0.3
345,277 - BACOVA_02041 0.28 +0.2
345,284 - BACOVA_02041 0.29 +0.1
345,367 + BACOVA_02041 0.36 -0.6
345,367 + BACOVA_02041 0.36 -0.3
345,367 + BACOVA_02041 0.36 -0.3
345,368 - BACOVA_02041 0.36 -0.7
345,368 - BACOVA_02041 0.36 -1.9
345,368 - BACOVA_02041 0.36 -1.1
345,369 + BACOVA_02041 0.36 +0.7
345,369 + BACOVA_02041 0.36 -0.4
345,445 - BACOVA_02041 0.43 +0.1
345,467 + BACOVA_02041 0.45 +1.5
345,467 + BACOVA_02041 0.45 -0.3
345,468 - BACOVA_02041 0.45 +0.1
345,469 + BACOVA_02041 0.45 +0.4
345,469 + BACOVA_02041 0.45 -0.2
345,470 - BACOVA_02041 0.45 +0.4
345,470 - BACOVA_02041 0.45 +0.8
345,470 - BACOVA_02041 0.45 +0.9
345,470 - BACOVA_02041 0.45 -0.7
345,470 - BACOVA_02041 0.45 -0.3
345,470 - BACOVA_02041 0.45 +2.7
345,470 - BACOVA_02041 0.45 -0.2
345,470 - BACOVA_02041 0.45 -1.3
345,473 + BACOVA_02041 0.45 +0.3
345,473 + BACOVA_02041 0.45 -0.2
345,564 + BACOVA_02041 0.53 -0.3
345,565 - BACOVA_02041 0.53 +0.0
345,644 - BACOVA_02041 0.60 +0.1
345,657 + BACOVA_02041 0.61 +0.6
345,658 - BACOVA_02041 0.61 -0.8
345,658 - BACOVA_02041 0.61 -0.3
345,658 - BACOVA_02041 0.61 -0.1
345,661 + BACOVA_02041 0.62 +0.7
345,661 + BACOVA_02041 0.62 -0.1
345,662 - BACOVA_02041 0.62 -0.1
345,662 - BACOVA_02041 0.62 +0.7
345,755 + BACOVA_02041 0.70 +0.0
345,756 - BACOVA_02041 0.70 -1.7
345,756 - BACOVA_02041 0.70 +0.3
345,756 - BACOVA_02041 0.70 -1.2
345,756 - BACOVA_02041 0.70 -0.1
345,763 - BACOVA_02041 0.70 +1.5
345,763 - BACOVA_02041 0.70 -0.5
345,861 - BACOVA_02041 0.79 +0.5
345,935 - BACOVA_02041 0.85 +0.5

Or see this region's nucleotide sequence