Experiment: bur MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03735 and OHPLBJKB_03736 are separated by 249 nucleotides OHPLBJKB_03736 and OHPLBJKB_03737 overlap by 4 nucleotides OHPLBJKB_03737 and OHPLBJKB_03738 are separated by 12 nucleotides
OHPLBJKB_03735: OHPLBJKB_03735 - 'RNA 2'-phosphotransferase' transl_table=11, at 3,919,508 to 3,920,062
_03735
OHPLBJKB_03736: OHPLBJKB_03736 - hypothetical protein, at 3,920,312 to 3,920,995
_03736
OHPLBJKB_03737: OHPLBJKB_03737 - Inner membrane protein YjiG, at 3,920,992 to 3,921,453
_03737
OHPLBJKB_03738: OHPLBJKB_03738 - Isoaspartyl dipeptidase, at 3,921,466 to 3,922,638
_03738
Position (kb)
3920
3921
3922 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3920.052 kb on + strand at 3920.052 kb on + strand at 3920.053 kb on - strand at 3920.053 kb on - strand at 3920.053 kb on - strand at 3920.053 kb on - strand at 3920.053 kb on - strand at 3920.053 kb on - strand at 3920.093 kb on - strand at 3920.169 kb on + strand at 3920.170 kb on - strand at 3920.208 kb on + strand at 3920.209 kb on - strand at 3920.209 kb on - strand at 3920.209 kb on - strand at 3920.209 kb on - strand at 3920.311 kb on + strand at 3920.311 kb on + strand at 3920.334 kb on + strand at 3920.368 kb on + strand at 3920.375 kb on + strand at 3920.397 kb on + strand, within OHPLBJKB_03736 at 3920.600 kb on - strand, within OHPLBJKB_03736 at 3920.647 kb on - strand, within OHPLBJKB_03736 at 3920.647 kb on - strand, within OHPLBJKB_03736 at 3920.662 kb on - strand, within OHPLBJKB_03736 at 3920.774 kb on - strand, within OHPLBJKB_03736 at 3920.837 kb on + strand, within OHPLBJKB_03736 at 3920.837 kb on + strand, within OHPLBJKB_03736 at 3920.838 kb on - strand, within OHPLBJKB_03736 at 3920.838 kb on - strand, within OHPLBJKB_03736 at 3920.838 kb on - strand, within OHPLBJKB_03736 at 3920.889 kb on + strand, within OHPLBJKB_03736 at 3920.889 kb on + strand, within OHPLBJKB_03736 at 3920.915 kb on - strand, within OHPLBJKB_03736 at 3920.951 kb on - strand at 3921.024 kb on + strand at 3921.024 kb on + strand at 3921.024 kb on + strand at 3921.024 kb on + strand at 3921.025 kb on - strand at 3921.054 kb on + strand, within OHPLBJKB_03737 at 3921.055 kb on - strand, within OHPLBJKB_03737 at 3921.056 kb on - strand, within OHPLBJKB_03737 at 3921.150 kb on + strand, within OHPLBJKB_03737 at 3921.150 kb on + strand, within OHPLBJKB_03737 at 3921.313 kb on + strand, within OHPLBJKB_03737 at 3921.313 kb on + strand, within OHPLBJKB_03737 at 3921.314 kb on - strand, within OHPLBJKB_03737 at 3921.314 kb on - strand, within OHPLBJKB_03737 at 3921.317 kb on + strand, within OHPLBJKB_03737 at 3921.317 kb on + strand, within OHPLBJKB_03737 at 3921.318 kb on - strand, within OHPLBJKB_03737 at 3921.380 kb on - strand, within OHPLBJKB_03737 at 3921.380 kb on - strand, within OHPLBJKB_03737 at 3921.436 kb on - strand at 3921.517 kb on + strand at 3921.517 kb on + strand at 3921.517 kb on + strand at 3921.606 kb on - strand, within OHPLBJKB_03738 at 3921.657 kb on + strand, within OHPLBJKB_03738 at 3921.657 kb on + strand, within OHPLBJKB_03738 at 3921.658 kb on - strand, within OHPLBJKB_03738 at 3921.658 kb on - strand, within OHPLBJKB_03738 at 3921.658 kb on - strand, within OHPLBJKB_03738 at 3921.658 kb on - strand, within OHPLBJKB_03738 at 3921.658 kb on - strand, within OHPLBJKB_03738 at 3921.658 kb on - strand, within OHPLBJKB_03738 at 3921.789 kb on + strand, within OHPLBJKB_03738 at 3921.790 kb on - strand, within OHPLBJKB_03738 at 3921.790 kb on - strand, within OHPLBJKB_03738 at 3921.875 kb on - strand, within OHPLBJKB_03738 at 3922.002 kb on + strand, within OHPLBJKB_03738 at 3922.005 kb on + strand, within OHPLBJKB_03738 at 3922.102 kb on + strand, within OHPLBJKB_03738 at 3922.103 kb on - strand, within OHPLBJKB_03738 at 3922.361 kb on + strand, within OHPLBJKB_03738 at 3922.426 kb on + strand, within OHPLBJKB_03738 at 3922.426 kb on + strand, within OHPLBJKB_03738 at 3922.426 kb on + strand, within OHPLBJKB_03738 at 3922.427 kb on - strand, within OHPLBJKB_03738
Per-strain Table
Position Strand Gene LocusTag Fraction bur MOI1 remove 3,920,052 + -1.4 3,920,052 + +0.5 3,920,053 - -0.8 3,920,053 - -0.4 3,920,053 - +0.7 3,920,053 - -0.1 3,920,053 - -0.2 3,920,053 - -1.2 3,920,093 - -0.0 3,920,169 + -0.2 3,920,170 - +0.5 3,920,208 + -1.2 3,920,209 - -0.6 3,920,209 - -1.3 3,920,209 - -0.7 3,920,209 - -0.4 3,920,311 + +0.1 3,920,311 + -0.0 3,920,334 + +0.4 3,920,368 + +1.1 3,920,375 + +1.0 3,920,397 + OHPLBJKB_03736 0.12 -0.8 3,920,600 - OHPLBJKB_03736 0.42 +0.2 3,920,647 - OHPLBJKB_03736 0.49 -1.1 3,920,647 - OHPLBJKB_03736 0.49 +0.7 3,920,662 - OHPLBJKB_03736 0.51 -0.3 3,920,774 - OHPLBJKB_03736 0.68 -1.9 3,920,837 + OHPLBJKB_03736 0.77 -0.3 3,920,837 + OHPLBJKB_03736 0.77 +1.2 3,920,838 - OHPLBJKB_03736 0.77 +0.2 3,920,838 - OHPLBJKB_03736 0.77 -0.5 3,920,838 - OHPLBJKB_03736 0.77 -0.6 3,920,889 + OHPLBJKB_03736 0.84 -2.3 3,920,889 + OHPLBJKB_03736 0.84 -0.5 3,920,915 - OHPLBJKB_03736 0.88 +1.0 3,920,951 - -1.4 3,921,024 + +0.2 3,921,024 + +0.9 3,921,024 + +0.1 3,921,024 + +0.2 3,921,025 - -1.0 3,921,054 + OHPLBJKB_03737 0.13 -1.7 3,921,055 - OHPLBJKB_03737 0.14 +0.8 3,921,056 - OHPLBJKB_03737 0.14 -0.0 3,921,150 + OHPLBJKB_03737 0.34 +1.3 3,921,150 + OHPLBJKB_03737 0.34 +1.3 3,921,313 + OHPLBJKB_03737 0.69 -2.1 3,921,313 + OHPLBJKB_03737 0.69 +0.7 3,921,314 - OHPLBJKB_03737 0.70 +1.2 3,921,314 - OHPLBJKB_03737 0.70 +0.8 3,921,317 + OHPLBJKB_03737 0.70 +0.7 3,921,317 + OHPLBJKB_03737 0.70 +0.0 3,921,318 - OHPLBJKB_03737 0.71 -0.2 3,921,380 - OHPLBJKB_03737 0.84 +1.9 3,921,380 - OHPLBJKB_03737 0.84 -3.7 3,921,436 - -0.7 3,921,517 + -0.2 3,921,517 + +0.7 3,921,517 + -1.9 3,921,606 - OHPLBJKB_03738 0.12 -0.1 3,921,657 + OHPLBJKB_03738 0.16 +1.2 3,921,657 + OHPLBJKB_03738 0.16 -2.0 3,921,658 - OHPLBJKB_03738 0.16 +1.0 3,921,658 - OHPLBJKB_03738 0.16 +0.2 3,921,658 - OHPLBJKB_03738 0.16 -0.6 3,921,658 - OHPLBJKB_03738 0.16 +1.5 3,921,658 - OHPLBJKB_03738 0.16 +0.1 3,921,658 - OHPLBJKB_03738 0.16 -0.4 3,921,789 + OHPLBJKB_03738 0.28 -0.1 3,921,790 - OHPLBJKB_03738 0.28 +1.9 3,921,790 - OHPLBJKB_03738 0.28 -0.8 3,921,875 - OHPLBJKB_03738 0.35 +0.1 3,922,002 + OHPLBJKB_03738 0.46 -0.3 3,922,005 + OHPLBJKB_03738 0.46 +0.2 3,922,102 + OHPLBJKB_03738 0.54 -3.1 3,922,103 - OHPLBJKB_03738 0.54 +0.1 3,922,361 + OHPLBJKB_03738 0.76 -0.5 3,922,426 + OHPLBJKB_03738 0.82 +1.6 3,922,426 + OHPLBJKB_03738 0.82 -0.6 3,922,426 + OHPLBJKB_03738 0.82 -0.5 3,922,427 - OHPLBJKB_03738 0.82 -0.4
Or see this region's nucleotide sequence