Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02580

Experiment: bur MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02578 and OHPLBJKB_02579 are separated by 159 nucleotidesOHPLBJKB_02579 and OHPLBJKB_02580 are separated by 111 nucleotidesOHPLBJKB_02580 and OHPLBJKB_02581 are separated by 571 nucleotides OHPLBJKB_02578: OHPLBJKB_02578 - Large ribosomal RNA subunit accumulation protein YceD, at 2,691,649 to 2,692,170 _02578 OHPLBJKB_02579: OHPLBJKB_02579 - Maf-like protein YceF, at 2,692,330 to 2,692,953 _02579 OHPLBJKB_02580: OHPLBJKB_02580 - Ribosomal large subunit pseudouridine synthase C, at 2,693,065 to 2,694,024 _02580 OHPLBJKB_02581: OHPLBJKB_02581 - Ribonuclease E, at 2,694,596 to 2,697,781 _02581 Position (kb) 2693 2694 2695Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2692.095 kb on - strand, within OHPLBJKB_02578at 2692.099 kb on - strand, within OHPLBJKB_02578at 2692.099 kb on - strand, within OHPLBJKB_02578at 2692.107 kb on - strand, within OHPLBJKB_02578at 2692.160 kb on - strandat 2692.193 kb on - strandat 2692.201 kb on - strandat 2692.243 kb on - strandat 2692.321 kb on + strandat 2692.349 kb on + strandat 2692.351 kb on + strandat 2692.351 kb on + strandat 2692.351 kb on + strandat 2692.352 kb on - strandat 2692.375 kb on - strandat 2692.385 kb on + strandat 2692.386 kb on - strandat 2692.560 kb on - strand, within OHPLBJKB_02579at 2692.564 kb on - strand, within OHPLBJKB_02579at 2692.564 kb on - strand, within OHPLBJKB_02579at 2692.580 kb on + strand, within OHPLBJKB_02579at 2692.580 kb on + strand, within OHPLBJKB_02579at 2692.580 kb on + strand, within OHPLBJKB_02579at 2692.580 kb on + strand, within OHPLBJKB_02579at 2692.581 kb on - strand, within OHPLBJKB_02579at 2692.581 kb on - strand, within OHPLBJKB_02579at 2692.581 kb on - strand, within OHPLBJKB_02579at 2692.581 kb on - strand, within OHPLBJKB_02579at 2692.675 kb on + strand, within OHPLBJKB_02579at 2692.675 kb on + strand, within OHPLBJKB_02579at 2692.675 kb on + strand, within OHPLBJKB_02579at 2692.675 kb on + strand, within OHPLBJKB_02579at 2692.695 kb on + strand, within OHPLBJKB_02579at 2692.776 kb on + strand, within OHPLBJKB_02579at 2692.780 kb on + strand, within OHPLBJKB_02579at 2692.780 kb on + strand, within OHPLBJKB_02579at 2692.780 kb on + strand, within OHPLBJKB_02579at 2692.781 kb on - strand, within OHPLBJKB_02579at 2692.781 kb on - strand, within OHPLBJKB_02579at 2692.781 kb on - strand, within OHPLBJKB_02579at 2692.815 kb on + strand, within OHPLBJKB_02579at 2692.821 kb on + strand, within OHPLBJKB_02579at 2692.821 kb on + strand, within OHPLBJKB_02579at 2692.843 kb on - strand, within OHPLBJKB_02579at 2692.860 kb on - strand, within OHPLBJKB_02579at 2692.920 kb on - strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.054 kb on - strandat 2693.054 kb on - strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.056 kb on - strandat 2693.056 kb on - strandat 2693.056 kb on - strandat 2693.056 kb on - strandat 2693.056 kb on - strandat 2693.056 kb on - strandat 2693.063 kb on + strandat 2693.194 kb on + strand, within OHPLBJKB_02580at 2693.276 kb on + strand, within OHPLBJKB_02580at 2693.276 kb on + strand, within OHPLBJKB_02580at 2693.276 kb on + strand, within OHPLBJKB_02580at 2693.277 kb on - strand, within OHPLBJKB_02580at 2693.283 kb on + strand, within OHPLBJKB_02580at 2693.283 kb on + strand, within OHPLBJKB_02580at 2693.284 kb on - strand, within OHPLBJKB_02580at 2693.305 kb on - strand, within OHPLBJKB_02580at 2693.305 kb on - strand, within OHPLBJKB_02580at 2693.349 kb on - strand, within OHPLBJKB_02580at 2693.365 kb on - strand, within OHPLBJKB_02580at 2693.409 kb on + strand, within OHPLBJKB_02580at 2693.409 kb on + strand, within OHPLBJKB_02580at 2693.686 kb on + strand, within OHPLBJKB_02580at 2693.686 kb on + strand, within OHPLBJKB_02580at 2693.686 kb on + strand, within OHPLBJKB_02580at 2693.687 kb on - strand, within OHPLBJKB_02580at 2693.735 kb on + strand, within OHPLBJKB_02580at 2693.735 kb on + strand, within OHPLBJKB_02580at 2693.735 kb on + strand, within OHPLBJKB_02580at 2693.736 kb on - strand, within OHPLBJKB_02580at 2693.736 kb on - strand, within OHPLBJKB_02580at 2693.736 kb on - strand, within OHPLBJKB_02580at 2693.736 kb on - strand, within OHPLBJKB_02580at 2693.737 kb on + strand, within OHPLBJKB_02580at 2693.737 kb on + strand, within OHPLBJKB_02580at 2693.737 kb on + strand, within OHPLBJKB_02580at 2693.738 kb on - strand, within OHPLBJKB_02580at 2693.738 kb on - strand, within OHPLBJKB_02580at 2693.738 kb on - strand, within OHPLBJKB_02580at 2693.738 kb on - strand, within OHPLBJKB_02580at 2693.738 kb on - strand, within OHPLBJKB_02580at 2693.738 kb on - strand, within OHPLBJKB_02580at 2693.738 kb on - strand, within OHPLBJKB_02580at 2693.738 kb on - strand, within OHPLBJKB_02580at 2693.824 kb on - strand, within OHPLBJKB_02580at 2693.850 kb on + strand, within OHPLBJKB_02580at 2693.850 kb on + strand, within OHPLBJKB_02580at 2693.863 kb on - strand, within OHPLBJKB_02580at 2693.863 kb on - strand, within OHPLBJKB_02580at 2693.863 kb on - strand, within OHPLBJKB_02580at 2693.905 kb on - strand, within OHPLBJKB_02580at 2693.910 kb on - strand, within OHPLBJKB_02580at 2693.961 kb on + strandat 2693.988 kb on + strandat 2693.988 kb on + strandat 2694.038 kb on - strandat 2694.042 kb on - strandat 2694.073 kb on - strandat 2694.078 kb on + strandat 2694.078 kb on + strandat 2694.078 kb on + strandat 2694.078 kb on + strandat 2694.078 kb on + strandat 2694.078 kb on + strandat 2694.078 kb on + strandat 2694.078 kb on + strandat 2694.079 kb on - strandat 2694.079 kb on - strandat 2694.079 kb on - strandat 2694.079 kb on - strandat 2694.079 kb on - strandat 2694.079 kb on - strandat 2694.079 kb on - strandat 2694.079 kb on - strandat 2694.081 kb on - strandat 2694.097 kb on + strandat 2694.097 kb on + strandat 2694.098 kb on - strandat 2694.100 kb on + strandat 2694.100 kb on + strandat 2694.100 kb on + strandat 2694.101 kb on - strandat 2694.101 kb on - strandat 2694.101 kb on - strandat 2694.121 kb on + strandat 2694.186 kb on + strandat 2694.186 kb on + strandat 2694.186 kb on + strandat 2694.187 kb on - strandat 2694.187 kb on - strandat 2694.203 kb on + strandat 2694.203 kb on + strandat 2694.203 kb on + strandat 2694.203 kb on + strandat 2694.203 kb on + strandat 2694.203 kb on + strandat 2694.203 kb on + strandat 2694.205 kb on + strandat 2694.384 kb on + strandat 2694.397 kb on + strandat 2694.400 kb on + strandat 2694.420 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
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2,692,095 - OHPLBJKB_02578 0.85 -2.4
2,692,099 - OHPLBJKB_02578 0.86 -1.3
2,692,099 - OHPLBJKB_02578 0.86 +0.3
2,692,107 - OHPLBJKB_02578 0.88 -0.4
2,692,160 - -1.0
2,692,193 - -1.0
2,692,201 - -1.1
2,692,243 - -1.3
2,692,321 + +1.8
2,692,349 + -1.1
2,692,351 + -0.3
2,692,351 + -0.1
2,692,351 + -0.3
2,692,352 - -1.1
2,692,375 - -0.3
2,692,385 + -0.8
2,692,386 - +0.5
2,692,560 - OHPLBJKB_02579 0.37 -1.2
2,692,564 - OHPLBJKB_02579 0.38 -1.3
2,692,564 - OHPLBJKB_02579 0.38 +0.8
2,692,580 + OHPLBJKB_02579 0.40 -1.2
2,692,580 + OHPLBJKB_02579 0.40 +0.7
2,692,580 + OHPLBJKB_02579 0.40 -0.8
2,692,580 + OHPLBJKB_02579 0.40 -1.9
2,692,581 - OHPLBJKB_02579 0.40 -0.8
2,692,581 - OHPLBJKB_02579 0.40 +4.6
2,692,581 - OHPLBJKB_02579 0.40 -0.8
2,692,581 - OHPLBJKB_02579 0.40 -1.3
2,692,675 + OHPLBJKB_02579 0.55 -1.4
2,692,675 + OHPLBJKB_02579 0.55 -0.4
2,692,675 + OHPLBJKB_02579 0.55 +0.9
2,692,675 + OHPLBJKB_02579 0.55 -1.5
2,692,695 + OHPLBJKB_02579 0.58 +0.1
2,692,776 + OHPLBJKB_02579 0.71 -1.7
2,692,780 + OHPLBJKB_02579 0.72 -2.4
2,692,780 + OHPLBJKB_02579 0.72 +0.0
2,692,780 + OHPLBJKB_02579 0.72 -0.1
2,692,781 - OHPLBJKB_02579 0.72 +0.3
2,692,781 - OHPLBJKB_02579 0.72 -0.2
2,692,781 - OHPLBJKB_02579 0.72 -0.5
2,692,815 + OHPLBJKB_02579 0.78 +0.0
2,692,821 + OHPLBJKB_02579 0.79 +0.1
2,692,821 + OHPLBJKB_02579 0.79 +2.7
2,692,843 - OHPLBJKB_02579 0.82 +0.3
2,692,860 - OHPLBJKB_02579 0.85 -1.7
2,692,920 - +0.4
2,693,053 + -0.4
2,693,053 + -0.1
2,693,053 + -0.4
2,693,053 + +1.7
2,693,053 + -1.5
2,693,053 + -1.5
2,693,053 + +1.1
2,693,054 - +0.3
2,693,054 - -0.5
2,693,055 + +1.2
2,693,055 + +0.5
2,693,055 + +1.1
2,693,055 + -1.4
2,693,055 + -0.8
2,693,055 + +1.0
2,693,055 + -0.0
2,693,055 + -1.2
2,693,055 + -2.5
2,693,055 + +1.9
2,693,055 + +0.1
2,693,055 + -0.4
2,693,055 + +2.0
2,693,055 + -2.0
2,693,055 + +1.4
2,693,056 - -0.1
2,693,056 - +0.2
2,693,056 - +0.6
2,693,056 - +0.5
2,693,056 - -0.3
2,693,056 - -0.9
2,693,063 + -0.4
2,693,194 + OHPLBJKB_02580 0.13 -0.4
2,693,276 + OHPLBJKB_02580 0.22 -0.7
2,693,276 + OHPLBJKB_02580 0.22 -1.1
2,693,276 + OHPLBJKB_02580 0.22 -0.9
2,693,277 - OHPLBJKB_02580 0.22 -1.1
2,693,283 + OHPLBJKB_02580 0.23 -1.4
2,693,283 + OHPLBJKB_02580 0.23 -1.7
2,693,284 - OHPLBJKB_02580 0.23 -0.4
2,693,305 - OHPLBJKB_02580 0.25 -2.2
2,693,305 - OHPLBJKB_02580 0.25 +0.6
2,693,349 - OHPLBJKB_02580 0.30 -0.8
2,693,365 - OHPLBJKB_02580 0.31 -1.6
2,693,409 + OHPLBJKB_02580 0.36 +1.6
2,693,409 + OHPLBJKB_02580 0.36 -0.2
2,693,686 + OHPLBJKB_02580 0.65 +0.0
2,693,686 + OHPLBJKB_02580 0.65 +1.7
2,693,686 + OHPLBJKB_02580 0.65 -1.1
2,693,687 - OHPLBJKB_02580 0.65 -0.4
2,693,735 + OHPLBJKB_02580 0.70 +0.4
2,693,735 + OHPLBJKB_02580 0.70 -1.2
2,693,735 + OHPLBJKB_02580 0.70 -0.1
2,693,736 - OHPLBJKB_02580 0.70 -0.9
2,693,736 - OHPLBJKB_02580 0.70 -0.5
2,693,736 - OHPLBJKB_02580 0.70 -2.3
2,693,736 - OHPLBJKB_02580 0.70 -0.4
2,693,737 + OHPLBJKB_02580 0.70 +1.0
2,693,737 + OHPLBJKB_02580 0.70 -0.2
2,693,737 + OHPLBJKB_02580 0.70 -0.6
2,693,738 - OHPLBJKB_02580 0.70 -3.1
2,693,738 - OHPLBJKB_02580 0.70 +0.1
2,693,738 - OHPLBJKB_02580 0.70 -1.1
2,693,738 - OHPLBJKB_02580 0.70 -3.1
2,693,738 - OHPLBJKB_02580 0.70 -2.0
2,693,738 - OHPLBJKB_02580 0.70 -2.2
2,693,738 - OHPLBJKB_02580 0.70 -2.7
2,693,738 - OHPLBJKB_02580 0.70 -1.1
2,693,824 - OHPLBJKB_02580 0.79 -2.7
2,693,850 + OHPLBJKB_02580 0.82 -0.3
2,693,850 + OHPLBJKB_02580 0.82 -1.7
2,693,863 - OHPLBJKB_02580 0.83 +0.4
2,693,863 - OHPLBJKB_02580 0.83 -0.7
2,693,863 - OHPLBJKB_02580 0.83 -0.7
2,693,905 - OHPLBJKB_02580 0.88 -2.1
2,693,910 - OHPLBJKB_02580 0.88 -2.9
2,693,961 + -1.4
2,693,988 + -1.8
2,693,988 + -1.4
2,694,038 - +0.8
2,694,042 - -0.4
2,694,073 - +1.0
2,694,078 + +0.5
2,694,078 + -0.5
2,694,078 + -0.4
2,694,078 + +0.7
2,694,078 + +0.5
2,694,078 + -1.0
2,694,078 + -0.1
2,694,078 + +0.1
2,694,079 - +1.0
2,694,079 - +0.7
2,694,079 - -1.0
2,694,079 - +1.3
2,694,079 - +0.0
2,694,079 - -2.5
2,694,079 - -2.0
2,694,079 - +0.3
2,694,081 - +1.5
2,694,097 + -0.5
2,694,097 + +0.4
2,694,098 - -1.4
2,694,100 + -1.2
2,694,100 + -0.1
2,694,100 + +1.2
2,694,101 - -1.2
2,694,101 - +1.6
2,694,101 - -0.6
2,694,121 + -1.8
2,694,186 + -0.8
2,694,186 + +1.1
2,694,186 + +1.4
2,694,187 - +1.6
2,694,187 - +0.1
2,694,203 + +3.0
2,694,203 + +0.5
2,694,203 + -0.7
2,694,203 + +1.2
2,694,203 + +0.5
2,694,203 + +1.7
2,694,203 + +1.1
2,694,205 + +0.5
2,694,384 + +1.3
2,694,397 + +2.6
2,694,400 + +1.8
2,694,420 + +0.7

Or see this region's nucleotide sequence