Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01842

Experiment: bur MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01840 and OHPLBJKB_01841 are separated by 20 nucleotidesOHPLBJKB_01841 and OHPLBJKB_01842 are separated by 144 nucleotidesOHPLBJKB_01842 and OHPLBJKB_01843 are separated by 45 nucleotides OHPLBJKB_01840: OHPLBJKB_01840 - Chemotaxis protein CheA, at 1,916,131 to 1,918,095 _01840 OHPLBJKB_01841: OHPLBJKB_01841 - Chemotaxis protein CheW, at 1,918,116 to 1,918,619 _01841 OHPLBJKB_01842: OHPLBJKB_01842 - Methyl-accepting chemotaxis protein II, at 1,918,764 to 1,920,425 _01842 OHPLBJKB_01843: OHPLBJKB_01843 - Methyl-accepting chemotaxis protein IV, at 1,920,471 to 1,922,072 _01843 Position (kb) 1918 1919 1920 1921Strain fitness (log2 ratio) -2 -1 0 1 2at 1917.802 kb on + strand, within OHPLBJKB_01840at 1917.802 kb on + strand, within OHPLBJKB_01840at 1917.926 kb on + strandat 1917.927 kb on - strandat 1917.966 kb on + strandat 1917.967 kb on - strandat 1917.967 kb on - strandat 1917.970 kb on + strandat 1918.075 kb on - strandat 1918.075 kb on - strandat 1918.116 kb on - strandat 1918.181 kb on + strand, within OHPLBJKB_01841at 1918.181 kb on + strand, within OHPLBJKB_01841at 1918.181 kb on + strand, within OHPLBJKB_01841at 1918.181 kb on + strand, within OHPLBJKB_01841at 1918.182 kb on - strand, within OHPLBJKB_01841at 1918.182 kb on - strand, within OHPLBJKB_01841at 1918.250 kb on - strand, within OHPLBJKB_01841at 1918.327 kb on + strand, within OHPLBJKB_01841at 1918.327 kb on + strand, within OHPLBJKB_01841at 1918.360 kb on - strand, within OHPLBJKB_01841at 1918.360 kb on - strand, within OHPLBJKB_01841at 1918.361 kb on + strand, within OHPLBJKB_01841at 1918.375 kb on + strand, within OHPLBJKB_01841at 1918.376 kb on - strand, within OHPLBJKB_01841at 1918.376 kb on - strand, within OHPLBJKB_01841at 1918.376 kb on - strand, within OHPLBJKB_01841at 1918.379 kb on + strand, within OHPLBJKB_01841at 1918.591 kb on + strandat 1918.591 kb on + strandat 1918.591 kb on + strandat 1918.596 kb on - strandat 1918.617 kb on + strandat 1918.618 kb on - strandat 1918.706 kb on + strandat 1918.707 kb on - strandat 1918.763 kb on + strandat 1918.763 kb on + strandat 1918.825 kb on + strandat 1918.826 kb on - strandat 1918.832 kb on + strandat 1918.833 kb on - strandat 1918.833 kb on - strandat 1918.900 kb on + strandat 1918.939 kb on + strand, within OHPLBJKB_01842at 1918.940 kb on - strand, within OHPLBJKB_01842at 1918.940 kb on - strand, within OHPLBJKB_01842at 1919.073 kb on + strand, within OHPLBJKB_01842at 1919.073 kb on + strand, within OHPLBJKB_01842at 1919.126 kb on + strand, within OHPLBJKB_01842at 1919.129 kb on + strand, within OHPLBJKB_01842at 1919.151 kb on + strand, within OHPLBJKB_01842at 1919.154 kb on + strand, within OHPLBJKB_01842at 1919.182 kb on - strand, within OHPLBJKB_01842at 1919.185 kb on + strand, within OHPLBJKB_01842at 1919.405 kb on + strand, within OHPLBJKB_01842at 1919.406 kb on - strand, within OHPLBJKB_01842at 1919.415 kb on - strand, within OHPLBJKB_01842at 1919.531 kb on + strand, within OHPLBJKB_01842at 1919.531 kb on + strand, within OHPLBJKB_01842at 1919.531 kb on + strand, within OHPLBJKB_01842at 1919.532 kb on - strand, within OHPLBJKB_01842at 1919.532 kb on - strand, within OHPLBJKB_01842at 1919.532 kb on - strand, within OHPLBJKB_01842at 1919.589 kb on + strand, within OHPLBJKB_01842at 1919.589 kb on + strand, within OHPLBJKB_01842at 1919.849 kb on + strand, within OHPLBJKB_01842at 1919.883 kb on - strand, within OHPLBJKB_01842at 1920.122 kb on + strand, within OHPLBJKB_01842at 1920.434 kb on + strandat 1920.434 kb on + strandat 1920.435 kb on - strandat 1920.435 kb on - strandat 1920.482 kb on + strandat 1920.509 kb on - strandat 1920.647 kb on - strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.698 kb on + strand, within OHPLBJKB_01843at 1920.699 kb on - strand, within OHPLBJKB_01843at 1920.699 kb on - strand, within OHPLBJKB_01843at 1920.699 kb on - strand, within OHPLBJKB_01843at 1920.699 kb on - strand, within OHPLBJKB_01843at 1920.699 kb on - strand, within OHPLBJKB_01843at 1920.699 kb on - strand, within OHPLBJKB_01843at 1920.699 kb on - strand, within OHPLBJKB_01843at 1920.699 kb on - strand, within OHPLBJKB_01843at 1920.699 kb on - strand, within OHPLBJKB_01843at 1920.719 kb on + strand, within OHPLBJKB_01843at 1920.720 kb on - strand, within OHPLBJKB_01843at 1920.720 kb on - strand, within OHPLBJKB_01843at 1920.774 kb on - strand, within OHPLBJKB_01843at 1920.782 kb on + strand, within OHPLBJKB_01843at 1920.782 kb on + strand, within OHPLBJKB_01843at 1920.953 kb on + strand, within OHPLBJKB_01843at 1921.019 kb on + strand, within OHPLBJKB_01843at 1921.020 kb on - strand, within OHPLBJKB_01843at 1921.020 kb on - strand, within OHPLBJKB_01843at 1921.024 kb on - strand, within OHPLBJKB_01843at 1921.024 kb on - strand, within OHPLBJKB_01843at 1921.058 kb on + strand, within OHPLBJKB_01843at 1921.059 kb on - strand, within OHPLBJKB_01843at 1921.074 kb on + strand, within OHPLBJKB_01843at 1921.074 kb on + strand, within OHPLBJKB_01843at 1921.188 kb on + strand, within OHPLBJKB_01843at 1921.188 kb on + strand, within OHPLBJKB_01843at 1921.188 kb on + strand, within OHPLBJKB_01843at 1921.188 kb on + strand, within OHPLBJKB_01843at 1921.189 kb on - strand, within OHPLBJKB_01843at 1921.189 kb on - strand, within OHPLBJKB_01843at 1921.258 kb on + strand, within OHPLBJKB_01843at 1921.271 kb on + strand, within OHPLBJKB_01843at 1921.393 kb on + strand, within OHPLBJKB_01843

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
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1,917,802 + OHPLBJKB_01840 0.85 -0.6
1,917,802 + OHPLBJKB_01840 0.85 -1.7
1,917,926 + +0.1
1,917,927 - -0.4
1,917,966 + -0.4
1,917,967 - +1.1
1,917,967 - -1.7
1,917,970 + -0.4
1,918,075 - -0.8
1,918,075 - -0.3
1,918,116 - -0.1
1,918,181 + OHPLBJKB_01841 0.13 -1.5
1,918,181 + OHPLBJKB_01841 0.13 -0.3
1,918,181 + OHPLBJKB_01841 0.13 +0.5
1,918,181 + OHPLBJKB_01841 0.13 -0.5
1,918,182 - OHPLBJKB_01841 0.13 +1.6
1,918,182 - OHPLBJKB_01841 0.13 -0.4
1,918,250 - OHPLBJKB_01841 0.27 -0.7
1,918,327 + OHPLBJKB_01841 0.42 +2.1
1,918,327 + OHPLBJKB_01841 0.42 -0.6
1,918,360 - OHPLBJKB_01841 0.48 +1.1
1,918,360 - OHPLBJKB_01841 0.48 -1.7
1,918,361 + OHPLBJKB_01841 0.49 -1.5
1,918,375 + OHPLBJKB_01841 0.51 +0.7
1,918,376 - OHPLBJKB_01841 0.52 -1.1
1,918,376 - OHPLBJKB_01841 0.52 -0.2
1,918,376 - OHPLBJKB_01841 0.52 -1.8
1,918,379 + OHPLBJKB_01841 0.52 -1.6
1,918,591 + -0.1
1,918,591 + -0.1
1,918,591 + -1.7
1,918,596 - +1.9
1,918,617 + +0.6
1,918,618 - +0.4
1,918,706 + -1.2
1,918,707 - -0.8
1,918,763 + -1.1
1,918,763 + +0.0
1,918,825 + +0.9
1,918,826 - -0.2
1,918,832 + +0.0
1,918,833 - -0.2
1,918,833 - +0.8
1,918,900 + +0.1
1,918,939 + OHPLBJKB_01842 0.11 -2.5
1,918,940 - OHPLBJKB_01842 0.11 +0.5
1,918,940 - OHPLBJKB_01842 0.11 +0.0
1,919,073 + OHPLBJKB_01842 0.19 +0.4
1,919,073 + OHPLBJKB_01842 0.19 -0.6
1,919,126 + OHPLBJKB_01842 0.22 +0.8
1,919,129 + OHPLBJKB_01842 0.22 +0.4
1,919,151 + OHPLBJKB_01842 0.23 +0.6
1,919,154 + OHPLBJKB_01842 0.23 -0.2
1,919,182 - OHPLBJKB_01842 0.25 -1.1
1,919,185 + OHPLBJKB_01842 0.25 -0.2
1,919,405 + OHPLBJKB_01842 0.39 +1.5
1,919,406 - OHPLBJKB_01842 0.39 -0.6
1,919,415 - OHPLBJKB_01842 0.39 +0.7
1,919,531 + OHPLBJKB_01842 0.46 +0.1
1,919,531 + OHPLBJKB_01842 0.46 +0.0
1,919,531 + OHPLBJKB_01842 0.46 -1.3
1,919,532 - OHPLBJKB_01842 0.46 +0.6
1,919,532 - OHPLBJKB_01842 0.46 +0.3
1,919,532 - OHPLBJKB_01842 0.46 +0.9
1,919,589 + OHPLBJKB_01842 0.50 -1.0
1,919,589 + OHPLBJKB_01842 0.50 +0.1
1,919,849 + OHPLBJKB_01842 0.65 -1.9
1,919,883 - OHPLBJKB_01842 0.67 +0.1
1,920,122 + OHPLBJKB_01842 0.82 -1.0
1,920,434 + +0.0
1,920,434 + -0.6
1,920,435 - +1.8
1,920,435 - -1.3
1,920,482 + -1.7
1,920,509 - +0.5
1,920,647 - OHPLBJKB_01843 0.11 -0.6
1,920,698 + OHPLBJKB_01843 0.14 -2.1
1,920,698 + OHPLBJKB_01843 0.14 +0.6
1,920,698 + OHPLBJKB_01843 0.14 +0.3
1,920,698 + OHPLBJKB_01843 0.14 -1.7
1,920,698 + OHPLBJKB_01843 0.14 -0.7
1,920,698 + OHPLBJKB_01843 0.14 +0.3
1,920,698 + OHPLBJKB_01843 0.14 +2.3
1,920,698 + OHPLBJKB_01843 0.14 +0.8
1,920,698 + OHPLBJKB_01843 0.14 +0.7
1,920,698 + OHPLBJKB_01843 0.14 -0.2
1,920,698 + OHPLBJKB_01843 0.14 +1.0
1,920,698 + OHPLBJKB_01843 0.14 -1.2
1,920,699 - OHPLBJKB_01843 0.14 -0.4
1,920,699 - OHPLBJKB_01843 0.14 +0.3
1,920,699 - OHPLBJKB_01843 0.14 +2.5
1,920,699 - OHPLBJKB_01843 0.14 -0.1
1,920,699 - OHPLBJKB_01843 0.14 -0.5
1,920,699 - OHPLBJKB_01843 0.14 +0.6
1,920,699 - OHPLBJKB_01843 0.14 +0.5
1,920,699 - OHPLBJKB_01843 0.14 +0.2
1,920,699 - OHPLBJKB_01843 0.14 +0.5
1,920,719 + OHPLBJKB_01843 0.15 +0.0
1,920,720 - OHPLBJKB_01843 0.16 +1.9
1,920,720 - OHPLBJKB_01843 0.16 +1.2
1,920,774 - OHPLBJKB_01843 0.19 -0.5
1,920,782 + OHPLBJKB_01843 0.19 +1.0
1,920,782 + OHPLBJKB_01843 0.19 -1.9
1,920,953 + OHPLBJKB_01843 0.30 -0.5
1,921,019 + OHPLBJKB_01843 0.34 +0.1
1,921,020 - OHPLBJKB_01843 0.34 +0.3
1,921,020 - OHPLBJKB_01843 0.34 +1.3
1,921,024 - OHPLBJKB_01843 0.35 -0.2
1,921,024 - OHPLBJKB_01843 0.35 -1.7
1,921,058 + OHPLBJKB_01843 0.37 -0.3
1,921,059 - OHPLBJKB_01843 0.37 +1.4
1,921,074 + OHPLBJKB_01843 0.38 +0.0
1,921,074 + OHPLBJKB_01843 0.38 +0.6
1,921,188 + OHPLBJKB_01843 0.45 -1.3
1,921,188 + OHPLBJKB_01843 0.45 +1.0
1,921,188 + OHPLBJKB_01843 0.45 -0.1
1,921,188 + OHPLBJKB_01843 0.45 -0.4
1,921,189 - OHPLBJKB_01843 0.45 -2.3
1,921,189 - OHPLBJKB_01843 0.45 +2.6
1,921,258 + OHPLBJKB_01843 0.49 +0.4
1,921,271 + OHPLBJKB_01843 0.50 +0.2
1,921,393 + OHPLBJKB_01843 0.58 +0.6

Or see this region's nucleotide sequence