Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01683

Experiment: bur MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_01681 and OHPLBJKB_01682 are separated by 479 nucleotidesOHPLBJKB_01682 and OHPLBJKB_01683 overlap by 4 nucleotidesOHPLBJKB_01683 and OHPLBJKB_01684 are separated by 82 nucleotidesOHPLBJKB_01684 and OHPLBJKB_01685 are separated by 24 nucleotides OHPLBJKB_01681: OHPLBJKB_01681 - ATP phosphoribosyltransferase, at 1,773,680 to 1,774,579 _01681 OHPLBJKB_01682: OHPLBJKB_01682 - Antitoxin YefM, at 1,775,059 to 1,775,310 _01682 OHPLBJKB_01683: OHPLBJKB_01683 - Toxin YoeB, at 1,775,307 to 1,775,561 _01683 OHPLBJKB_01684: OHPLBJKB_01684 - Protein YeeZ, at 1,775,644 to 1,776,468 _01684 OHPLBJKB_01685: OHPLBJKB_01685 - HTH-type transcriptional regulator YhaJ, at 1,776,493 to 1,777,443 _01685 Position (kb) 1775 1776Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1774.380 kb on - strand, within OHPLBJKB_01681at 1774.380 kb on - strand, within OHPLBJKB_01681at 1774.529 kb on + strandat 1774.530 kb on - strandat 1774.549 kb on + strandat 1774.550 kb on - strandat 1774.553 kb on + strandat 1774.554 kb on - strandat 1774.758 kb on - strandat 1774.819 kb on - strandat 1774.834 kb on + strandat 1774.853 kb on + strandat 1774.857 kb on + strandat 1774.858 kb on - strandat 1774.987 kb on + strandat 1774.994 kb on + strandat 1774.994 kb on + strandat 1775.001 kb on + strandat 1775.009 kb on + strandat 1775.010 kb on - strandat 1775.013 kb on + strandat 1775.013 kb on + strandat 1775.065 kb on - strandat 1775.065 kb on - strandat 1775.071 kb on - strandat 1775.071 kb on - strandat 1775.192 kb on - strand, within OHPLBJKB_01682at 1775.192 kb on - strand, within OHPLBJKB_01682at 1775.216 kb on - strand, within OHPLBJKB_01682at 1775.314 kb on + strandat 1775.315 kb on - strandat 1775.344 kb on - strand, within OHPLBJKB_01683at 1775.396 kb on + strand, within OHPLBJKB_01683at 1775.430 kb on - strand, within OHPLBJKB_01683at 1775.456 kb on + strand, within OHPLBJKB_01683at 1775.457 kb on - strand, within OHPLBJKB_01683at 1775.457 kb on - strand, within OHPLBJKB_01683at 1775.486 kb on + strand, within OHPLBJKB_01683at 1775.508 kb on + strand, within OHPLBJKB_01683at 1775.508 kb on + strand, within OHPLBJKB_01683at 1775.520 kb on + strand, within OHPLBJKB_01683at 1775.521 kb on - strand, within OHPLBJKB_01683at 1775.607 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.616 kb on - strandat 1775.616 kb on - strandat 1775.616 kb on - strandat 1775.616 kb on - strandat 1775.621 kb on + strandat 1775.622 kb on - strandat 1775.622 kb on - strandat 1775.622 kb on - strandat 1775.629 kb on - strandat 1775.669 kb on + strandat 1775.734 kb on - strand, within OHPLBJKB_01684at 1775.781 kb on + strand, within OHPLBJKB_01684at 1775.782 kb on - strand, within OHPLBJKB_01684at 1775.782 kb on - strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.810 kb on + strand, within OHPLBJKB_01684at 1775.810 kb on + strand, within OHPLBJKB_01684at 1775.884 kb on - strand, within OHPLBJKB_01684at 1775.905 kb on + strand, within OHPLBJKB_01684at 1775.910 kb on - strand, within OHPLBJKB_01684at 1775.928 kb on - strand, within OHPLBJKB_01684at 1775.953 kb on - strand, within OHPLBJKB_01684at 1775.990 kb on - strand, within OHPLBJKB_01684at 1776.031 kb on - strand, within OHPLBJKB_01684at 1776.060 kb on - strand, within OHPLBJKB_01684at 1776.060 kb on - strand, within OHPLBJKB_01684at 1776.060 kb on - strand, within OHPLBJKB_01684at 1776.089 kb on + strand, within OHPLBJKB_01684at 1776.089 kb on + strand, within OHPLBJKB_01684at 1776.089 kb on + strand, within OHPLBJKB_01684at 1776.255 kb on + strand, within OHPLBJKB_01684at 1776.256 kb on - strand, within OHPLBJKB_01684at 1776.271 kb on + strand, within OHPLBJKB_01684at 1776.271 kb on + strand, within OHPLBJKB_01684at 1776.271 kb on + strand, within OHPLBJKB_01684at 1776.271 kb on + strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.273 kb on + strand, within OHPLBJKB_01684at 1776.274 kb on - strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.364 kb on - strand, within OHPLBJKB_01684at 1776.364 kb on - strand, within OHPLBJKB_01684at 1776.385 kb on - strand, within OHPLBJKB_01684at 1776.385 kb on - strand, within OHPLBJKB_01684at 1776.385 kb on - strand, within OHPLBJKB_01684at 1776.385 kb on - strand, within OHPLBJKB_01684at 1776.390 kb on + strandat 1776.412 kb on - strandat 1776.430 kb on + strandat 1776.513 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
remove
1,774,380 - OHPLBJKB_01681 0.78 -0.3
1,774,380 - OHPLBJKB_01681 0.78 -1.3
1,774,529 + -0.9
1,774,530 - -1.0
1,774,549 + -0.2
1,774,550 - +0.2
1,774,553 + -1.4
1,774,554 - -0.1
1,774,758 - +1.6
1,774,819 - -0.3
1,774,834 + -1.1
1,774,853 + +1.0
1,774,857 + +0.2
1,774,858 - +2.7
1,774,987 + +0.2
1,774,994 + +1.4
1,774,994 + +0.7
1,775,001 + +0.3
1,775,009 + +0.6
1,775,010 - +1.0
1,775,013 + -0.7
1,775,013 + -0.8
1,775,065 - +0.1
1,775,065 - +0.4
1,775,071 - +2.0
1,775,071 - +0.4
1,775,192 - OHPLBJKB_01682 0.53 -0.0
1,775,192 - OHPLBJKB_01682 0.53 +2.6
1,775,216 - OHPLBJKB_01682 0.62 +2.0
1,775,314 + +1.8
1,775,315 - -0.3
1,775,344 - OHPLBJKB_01683 0.15 -1.0
1,775,396 + OHPLBJKB_01683 0.35 -0.6
1,775,430 - OHPLBJKB_01683 0.48 -0.8
1,775,456 + OHPLBJKB_01683 0.58 -1.0
1,775,457 - OHPLBJKB_01683 0.59 -0.4
1,775,457 - OHPLBJKB_01683 0.59 -0.0
1,775,486 + OHPLBJKB_01683 0.70 +0.4
1,775,508 + OHPLBJKB_01683 0.79 +0.1
1,775,508 + OHPLBJKB_01683 0.79 -0.1
1,775,520 + OHPLBJKB_01683 0.84 +0.1
1,775,521 - OHPLBJKB_01683 0.84 -1.0
1,775,607 + -0.7
1,775,615 + +0.1
1,775,615 + +2.0
1,775,615 + -0.6
1,775,615 + -1.8
1,775,615 + +0.4
1,775,615 + +0.1
1,775,615 + +0.2
1,775,616 - +2.3
1,775,616 - -0.8
1,775,616 - -2.0
1,775,616 - +1.1
1,775,621 + -0.3
1,775,622 - +0.8
1,775,622 - -0.9
1,775,622 - +1.1
1,775,629 - +0.2
1,775,669 + -1.1
1,775,734 - OHPLBJKB_01684 0.11 -0.3
1,775,781 + OHPLBJKB_01684 0.17 -0.9
1,775,782 - OHPLBJKB_01684 0.17 +0.1
1,775,782 - OHPLBJKB_01684 0.17 +0.2
1,775,785 + OHPLBJKB_01684 0.17 +0.1
1,775,785 + OHPLBJKB_01684 0.17 -1.2
1,775,785 + OHPLBJKB_01684 0.17 -0.4
1,775,785 + OHPLBJKB_01684 0.17 +3.9
1,775,785 + OHPLBJKB_01684 0.17 +1.2
1,775,785 + OHPLBJKB_01684 0.17 -1.5
1,775,786 - OHPLBJKB_01684 0.17 +1.0
1,775,786 - OHPLBJKB_01684 0.17 +0.0
1,775,786 - OHPLBJKB_01684 0.17 -0.2
1,775,786 - OHPLBJKB_01684 0.17 +0.4
1,775,786 - OHPLBJKB_01684 0.17 +1.4
1,775,786 - OHPLBJKB_01684 0.17 -1.4
1,775,810 + OHPLBJKB_01684 0.20 +0.2
1,775,810 + OHPLBJKB_01684 0.20 +0.7
1,775,884 - OHPLBJKB_01684 0.29 -2.2
1,775,905 + OHPLBJKB_01684 0.32 -1.0
1,775,910 - OHPLBJKB_01684 0.32 +1.1
1,775,928 - OHPLBJKB_01684 0.34 +1.0
1,775,953 - OHPLBJKB_01684 0.37 -1.4
1,775,990 - OHPLBJKB_01684 0.42 +0.2
1,776,031 - OHPLBJKB_01684 0.47 -0.5
1,776,060 - OHPLBJKB_01684 0.50 +0.9
1,776,060 - OHPLBJKB_01684 0.50 +1.6
1,776,060 - OHPLBJKB_01684 0.50 -1.9
1,776,089 + OHPLBJKB_01684 0.54 +0.8
1,776,089 + OHPLBJKB_01684 0.54 +0.9
1,776,089 + OHPLBJKB_01684 0.54 -1.5
1,776,255 + OHPLBJKB_01684 0.74 +0.6
1,776,256 - OHPLBJKB_01684 0.74 +0.7
1,776,271 + OHPLBJKB_01684 0.76 -2.2
1,776,271 + OHPLBJKB_01684 0.76 -0.0
1,776,271 + OHPLBJKB_01684 0.76 +1.6
1,776,271 + OHPLBJKB_01684 0.76 -1.7
1,776,272 - OHPLBJKB_01684 0.76 +0.2
1,776,272 - OHPLBJKB_01684 0.76 -2.3
1,776,272 - OHPLBJKB_01684 0.76 +2.2
1,776,272 - OHPLBJKB_01684 0.76 -0.9
1,776,272 - OHPLBJKB_01684 0.76 -0.0
1,776,272 - OHPLBJKB_01684 0.76 -1.4
1,776,273 + OHPLBJKB_01684 0.76 -0.3
1,776,274 - OHPLBJKB_01684 0.76 -0.4
1,776,276 + OHPLBJKB_01684 0.77 -0.9
1,776,276 + OHPLBJKB_01684 0.77 +0.1
1,776,276 + OHPLBJKB_01684 0.77 -1.6
1,776,276 + OHPLBJKB_01684 0.77 -0.0
1,776,276 + OHPLBJKB_01684 0.77 +0.4
1,776,276 + OHPLBJKB_01684 0.77 +0.1
1,776,276 + OHPLBJKB_01684 0.77 -0.0
1,776,277 - OHPLBJKB_01684 0.77 +0.7
1,776,277 - OHPLBJKB_01684 0.77 +0.3
1,776,277 - OHPLBJKB_01684 0.77 +1.1
1,776,277 - OHPLBJKB_01684 0.77 -0.6
1,776,277 - OHPLBJKB_01684 0.77 -1.5
1,776,277 - OHPLBJKB_01684 0.77 -1.1
1,776,278 + OHPLBJKB_01684 0.77 +0.0
1,776,278 + OHPLBJKB_01684 0.77 -2.0
1,776,278 + OHPLBJKB_01684 0.77 +0.6
1,776,278 + OHPLBJKB_01684 0.77 +1.0
1,776,278 + OHPLBJKB_01684 0.77 +0.4
1,776,278 + OHPLBJKB_01684 0.77 -1.6
1,776,278 + OHPLBJKB_01684 0.77 +0.7
1,776,278 + OHPLBJKB_01684 0.77 -1.0
1,776,278 + OHPLBJKB_01684 0.77 +0.6
1,776,278 + OHPLBJKB_01684 0.77 +0.4
1,776,278 + OHPLBJKB_01684 0.77 +2.5
1,776,279 - OHPLBJKB_01684 0.77 -0.7
1,776,279 - OHPLBJKB_01684 0.77 -0.6
1,776,279 - OHPLBJKB_01684 0.77 -0.4
1,776,279 - OHPLBJKB_01684 0.77 -0.4
1,776,279 - OHPLBJKB_01684 0.77 -1.0
1,776,279 - OHPLBJKB_01684 0.77 -1.8
1,776,279 - OHPLBJKB_01684 0.77 -1.9
1,776,279 - OHPLBJKB_01684 0.77 +1.6
1,776,279 - OHPLBJKB_01684 0.77 +0.7
1,776,279 - OHPLBJKB_01684 0.77 -1.4
1,776,279 - OHPLBJKB_01684 0.77 +0.4
1,776,364 - OHPLBJKB_01684 0.87 -0.3
1,776,364 - OHPLBJKB_01684 0.87 -0.0
1,776,385 - OHPLBJKB_01684 0.90 -0.5
1,776,385 - OHPLBJKB_01684 0.90 -1.9
1,776,385 - OHPLBJKB_01684 0.90 +3.4
1,776,385 - OHPLBJKB_01684 0.90 +0.0
1,776,390 + +0.9
1,776,412 - +1.1
1,776,430 + +0.8
1,776,513 + +1.1

Or see this region's nucleotide sequence