Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01611

Experiment: bur MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01609 and OHPLBJKB_01610 overlap by 27 nucleotidesOHPLBJKB_01610 and OHPLBJKB_01611 overlap by 4 nucleotidesOHPLBJKB_01611 and OHPLBJKB_01612 overlap by 4 nucleotides OHPLBJKB_01609: OHPLBJKB_01609 - HTH-type transcriptional repressor YvoA, at 1,685,496 to 1,686,242 _01609 OHPLBJKB_01610: OHPLBJKB_01610 - 2-dehydro-3-deoxygluconokinase, at 1,686,216 to 1,687,181 _01610 OHPLBJKB_01611: OHPLBJKB_01611 - hypothetical protein, at 1,687,178 to 1,688,182 _01611 OHPLBJKB_01612: OHPLBJKB_01612 - Putative nucleoside transporter YegT, at 1,688,179 to 1,689,456 _01612 Position (kb) 1687 1688 1689Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1686.183 kb on - strandat 1686.217 kb on + strandat 1686.217 kb on + strandat 1686.217 kb on + strandat 1686.218 kb on - strandat 1686.218 kb on - strandat 1686.240 kb on + strandat 1686.313 kb on - strand, within OHPLBJKB_01610at 1686.396 kb on + strand, within OHPLBJKB_01610at 1686.397 kb on - strand, within OHPLBJKB_01610at 1686.448 kb on + strand, within OHPLBJKB_01610at 1686.449 kb on - strand, within OHPLBJKB_01610at 1686.449 kb on - strand, within OHPLBJKB_01610at 1686.538 kb on - strand, within OHPLBJKB_01610at 1686.588 kb on + strand, within OHPLBJKB_01610at 1686.589 kb on - strand, within OHPLBJKB_01610at 1686.619 kb on - strand, within OHPLBJKB_01610at 1686.642 kb on - strand, within OHPLBJKB_01610at 1686.822 kb on - strand, within OHPLBJKB_01610at 1686.929 kb on + strand, within OHPLBJKB_01610at 1687.143 kb on + strandat 1687.436 kb on - strand, within OHPLBJKB_01611at 1687.444 kb on + strand, within OHPLBJKB_01611at 1687.464 kb on + strand, within OHPLBJKB_01611at 1687.555 kb on + strand, within OHPLBJKB_01611at 1687.555 kb on + strand, within OHPLBJKB_01611at 1687.555 kb on + strand, within OHPLBJKB_01611at 1687.556 kb on - strand, within OHPLBJKB_01611at 1687.605 kb on - strand, within OHPLBJKB_01611at 1687.763 kb on + strand, within OHPLBJKB_01611at 1687.764 kb on - strand, within OHPLBJKB_01611at 1687.874 kb on + strand, within OHPLBJKB_01611at 1687.874 kb on + strand, within OHPLBJKB_01611at 1687.919 kb on - strand, within OHPLBJKB_01611at 1687.921 kb on + strand, within OHPLBJKB_01611at 1687.922 kb on - strand, within OHPLBJKB_01611at 1687.996 kb on + strand, within OHPLBJKB_01611at 1688.026 kb on - strand, within OHPLBJKB_01611at 1688.152 kb on - strandat 1688.167 kb on + strandat 1688.167 kb on + strandat 1688.167 kb on + strandat 1688.168 kb on - strandat 1688.168 kb on - strandat 1688.185 kb on - strandat 1688.486 kb on + strand, within OHPLBJKB_01612at 1688.486 kb on + strand, within OHPLBJKB_01612at 1688.486 kb on + strand, within OHPLBJKB_01612at 1688.486 kb on + strand, within OHPLBJKB_01612at 1688.486 kb on + strand, within OHPLBJKB_01612at 1688.486 kb on + strand, within OHPLBJKB_01612at 1688.486 kb on + strand, within OHPLBJKB_01612at 1688.487 kb on - strand, within OHPLBJKB_01612at 1688.487 kb on - strand, within OHPLBJKB_01612at 1688.487 kb on - strand, within OHPLBJKB_01612at 1688.492 kb on + strand, within OHPLBJKB_01612at 1688.492 kb on + strand, within OHPLBJKB_01612at 1688.492 kb on + strand, within OHPLBJKB_01612at 1688.493 kb on - strand, within OHPLBJKB_01612at 1688.504 kb on + strand, within OHPLBJKB_01612at 1688.505 kb on - strand, within OHPLBJKB_01612at 1688.521 kb on + strand, within OHPLBJKB_01612at 1688.521 kb on + strand, within OHPLBJKB_01612at 1688.521 kb on + strand, within OHPLBJKB_01612at 1688.567 kb on + strand, within OHPLBJKB_01612at 1688.585 kb on + strand, within OHPLBJKB_01612at 1688.586 kb on - strand, within OHPLBJKB_01612at 1688.589 kb on + strand, within OHPLBJKB_01612at 1688.590 kb on - strand, within OHPLBJKB_01612at 1688.683 kb on - strand, within OHPLBJKB_01612at 1688.683 kb on - strand, within OHPLBJKB_01612at 1688.683 kb on - strand, within OHPLBJKB_01612at 1688.771 kb on + strand, within OHPLBJKB_01612at 1688.771 kb on + strand, within OHPLBJKB_01612at 1688.771 kb on + strand, within OHPLBJKB_01612at 1688.771 kb on + strand, within OHPLBJKB_01612at 1688.771 kb on + strand, within OHPLBJKB_01612at 1688.772 kb on - strand, within OHPLBJKB_01612at 1688.772 kb on - strand, within OHPLBJKB_01612at 1688.772 kb on - strand, within OHPLBJKB_01612at 1688.774 kb on + strand, within OHPLBJKB_01612at 1688.774 kb on + strand, within OHPLBJKB_01612at 1688.774 kb on + strand, within OHPLBJKB_01612at 1688.774 kb on + strand, within OHPLBJKB_01612at 1688.775 kb on - strand, within OHPLBJKB_01612at 1688.775 kb on - strand, within OHPLBJKB_01612at 1688.775 kb on - strand, within OHPLBJKB_01612at 1688.775 kb on - strand, within OHPLBJKB_01612at 1688.874 kb on + strand, within OHPLBJKB_01612at 1688.874 kb on + strand, within OHPLBJKB_01612at 1688.874 kb on + strand, within OHPLBJKB_01612at 1688.875 kb on - strand, within OHPLBJKB_01612at 1688.875 kb on - strand, within OHPLBJKB_01612at 1688.977 kb on - strand, within OHPLBJKB_01612at 1689.004 kb on + strand, within OHPLBJKB_01612at 1689.005 kb on - strand, within OHPLBJKB_01612at 1689.141 kb on + strand, within OHPLBJKB_01612at 1689.143 kb on + strand, within OHPLBJKB_01612at 1689.143 kb on + strand, within OHPLBJKB_01612at 1689.143 kb on + strand, within OHPLBJKB_01612at 1689.143 kb on + strand, within OHPLBJKB_01612at 1689.144 kb on - strand, within OHPLBJKB_01612at 1689.144 kb on - strand, within OHPLBJKB_01612at 1689.144 kb on - strand, within OHPLBJKB_01612at 1689.144 kb on - strand, within OHPLBJKB_01612

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
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1,686,183 - +1.5
1,686,217 + +1.2
1,686,217 + -1.8
1,686,217 + +0.2
1,686,218 - +0.8
1,686,218 - +0.1
1,686,240 + -2.1
1,686,313 - OHPLBJKB_01610 0.10 +2.3
1,686,396 + OHPLBJKB_01610 0.19 -0.4
1,686,397 - OHPLBJKB_01610 0.19 +0.0
1,686,448 + OHPLBJKB_01610 0.24 +2.8
1,686,449 - OHPLBJKB_01610 0.24 +1.2
1,686,449 - OHPLBJKB_01610 0.24 +1.2
1,686,538 - OHPLBJKB_01610 0.33 -1.6
1,686,588 + OHPLBJKB_01610 0.39 -2.7
1,686,589 - OHPLBJKB_01610 0.39 -0.8
1,686,619 - OHPLBJKB_01610 0.42 -0.3
1,686,642 - OHPLBJKB_01610 0.44 -0.2
1,686,822 - OHPLBJKB_01610 0.63 -0.3
1,686,929 + OHPLBJKB_01610 0.74 -0.2
1,687,143 + +1.8
1,687,436 - OHPLBJKB_01611 0.26 +0.2
1,687,444 + OHPLBJKB_01611 0.26 -1.0
1,687,464 + OHPLBJKB_01611 0.28 -0.2
1,687,555 + OHPLBJKB_01611 0.38 +0.3
1,687,555 + OHPLBJKB_01611 0.38 -1.7
1,687,555 + OHPLBJKB_01611 0.38 -3.1
1,687,556 - OHPLBJKB_01611 0.38 +1.8
1,687,605 - OHPLBJKB_01611 0.42 -0.6
1,687,763 + OHPLBJKB_01611 0.58 +0.0
1,687,764 - OHPLBJKB_01611 0.58 +0.7
1,687,874 + OHPLBJKB_01611 0.69 -0.1
1,687,874 + OHPLBJKB_01611 0.69 -0.1
1,687,919 - OHPLBJKB_01611 0.74 -0.5
1,687,921 + OHPLBJKB_01611 0.74 -0.0
1,687,922 - OHPLBJKB_01611 0.74 -0.4
1,687,996 + OHPLBJKB_01611 0.81 -0.1
1,688,026 - OHPLBJKB_01611 0.84 -0.8
1,688,152 - -1.2
1,688,167 + -1.3
1,688,167 + -0.4
1,688,167 + -2.3
1,688,168 - +0.5
1,688,168 - +0.6
1,688,185 - -0.6
1,688,486 + OHPLBJKB_01612 0.24 +2.6
1,688,486 + OHPLBJKB_01612 0.24 -0.2
1,688,486 + OHPLBJKB_01612 0.24 +0.2
1,688,486 + OHPLBJKB_01612 0.24 -0.2
1,688,486 + OHPLBJKB_01612 0.24 -1.1
1,688,486 + OHPLBJKB_01612 0.24 +0.2
1,688,486 + OHPLBJKB_01612 0.24 +0.7
1,688,487 - OHPLBJKB_01612 0.24 -0.6
1,688,487 - OHPLBJKB_01612 0.24 -0.6
1,688,487 - OHPLBJKB_01612 0.24 -0.1
1,688,492 + OHPLBJKB_01612 0.24 +0.2
1,688,492 + OHPLBJKB_01612 0.24 -0.9
1,688,492 + OHPLBJKB_01612 0.24 -0.3
1,688,493 - OHPLBJKB_01612 0.25 -1.3
1,688,504 + OHPLBJKB_01612 0.25 -2.7
1,688,505 - OHPLBJKB_01612 0.26 -0.8
1,688,521 + OHPLBJKB_01612 0.27 -1.8
1,688,521 + OHPLBJKB_01612 0.27 +0.1
1,688,521 + OHPLBJKB_01612 0.27 -0.3
1,688,567 + OHPLBJKB_01612 0.30 -1.1
1,688,585 + OHPLBJKB_01612 0.32 +0.3
1,688,586 - OHPLBJKB_01612 0.32 -0.8
1,688,589 + OHPLBJKB_01612 0.32 +0.2
1,688,590 - OHPLBJKB_01612 0.32 -0.0
1,688,683 - OHPLBJKB_01612 0.39 +0.6
1,688,683 - OHPLBJKB_01612 0.39 -0.4
1,688,683 - OHPLBJKB_01612 0.39 -0.0
1,688,771 + OHPLBJKB_01612 0.46 -0.9
1,688,771 + OHPLBJKB_01612 0.46 +0.3
1,688,771 + OHPLBJKB_01612 0.46 -0.3
1,688,771 + OHPLBJKB_01612 0.46 -0.2
1,688,771 + OHPLBJKB_01612 0.46 +0.3
1,688,772 - OHPLBJKB_01612 0.46 -0.2
1,688,772 - OHPLBJKB_01612 0.46 -1.3
1,688,772 - OHPLBJKB_01612 0.46 -1.5
1,688,774 + OHPLBJKB_01612 0.47 +1.3
1,688,774 + OHPLBJKB_01612 0.47 +1.1
1,688,774 + OHPLBJKB_01612 0.47 +1.3
1,688,774 + OHPLBJKB_01612 0.47 -1.5
1,688,775 - OHPLBJKB_01612 0.47 -0.9
1,688,775 - OHPLBJKB_01612 0.47 -0.2
1,688,775 - OHPLBJKB_01612 0.47 -0.4
1,688,775 - OHPLBJKB_01612 0.47 +1.1
1,688,874 + OHPLBJKB_01612 0.54 +0.1
1,688,874 + OHPLBJKB_01612 0.54 -0.6
1,688,874 + OHPLBJKB_01612 0.54 +1.5
1,688,875 - OHPLBJKB_01612 0.54 +0.8
1,688,875 - OHPLBJKB_01612 0.54 -1.6
1,688,977 - OHPLBJKB_01612 0.62 -1.8
1,689,004 + OHPLBJKB_01612 0.65 +1.2
1,689,005 - OHPLBJKB_01612 0.65 -0.8
1,689,141 + OHPLBJKB_01612 0.75 +0.7
1,689,143 + OHPLBJKB_01612 0.75 -1.0
1,689,143 + OHPLBJKB_01612 0.75 +0.8
1,689,143 + OHPLBJKB_01612 0.75 +0.6
1,689,143 + OHPLBJKB_01612 0.75 -0.1
1,689,144 - OHPLBJKB_01612 0.76 -0.6
1,689,144 - OHPLBJKB_01612 0.76 +0.1
1,689,144 - OHPLBJKB_01612 0.76 +1.3
1,689,144 - OHPLBJKB_01612 0.76 +0.1

Or see this region's nucleotide sequence