Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01576

Experiment: bur MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01574 and OHPLBJKB_01575 are separated by 169 nucleotidesOHPLBJKB_01575 and OHPLBJKB_01576 are separated by 173 nucleotidesOHPLBJKB_01576 and OHPLBJKB_01577 are separated by 37 nucleotides OHPLBJKB_01574: OHPLBJKB_01574 - Inner membrane protein YohD, at 1,641,849 to 1,642,427 _01574 OHPLBJKB_01575: OHPLBJKB_01575 - Inner membrane protein YohC, at 1,642,597 to 1,643,184 _01575 OHPLBJKB_01576: OHPLBJKB_01576 - D-alanyl-D-alanine endopeptidase, at 1,643,358 to 1,644,290 _01576 OHPLBJKB_01577: OHPLBJKB_01577 - Quinone-dependent D-lactate dehydrogenase, at 1,644,328 to 1,646,043 _01577 Position (kb) 1643 1644 1645Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1642.399 kb on + strandat 1642.400 kb on - strandat 1642.400 kb on - strandat 1642.400 kb on - strandat 1642.400 kb on - strandat 1642.415 kb on + strandat 1642.415 kb on + strandat 1642.457 kb on + strandat 1642.463 kb on + strandat 1642.463 kb on + strandat 1642.463 kb on + strandat 1642.464 kb on - strandat 1642.464 kb on - strandat 1642.464 kb on - strandat 1642.464 kb on - strandat 1642.464 kb on - strandat 1642.498 kb on + strandat 1642.498 kb on + strandat 1642.517 kb on + strandat 1642.518 kb on - strandat 1642.552 kb on + strandat 1642.552 kb on + strandat 1642.553 kb on - strandat 1642.553 kb on - strandat 1642.553 kb on - strandat 1642.553 kb on - strandat 1642.553 kb on - strandat 1642.554 kb on + strandat 1642.554 kb on + strandat 1642.555 kb on - strandat 1642.555 kb on - strandat 1642.555 kb on - strandat 1642.555 kb on - strandat 1642.650 kb on + strandat 1642.681 kb on + strand, within OHPLBJKB_01575at 1642.682 kb on - strand, within OHPLBJKB_01575at 1642.740 kb on + strand, within OHPLBJKB_01575at 1642.784 kb on + strand, within OHPLBJKB_01575at 1642.830 kb on + strand, within OHPLBJKB_01575at 1642.831 kb on - strand, within OHPLBJKB_01575at 1643.021 kb on - strand, within OHPLBJKB_01575at 1643.046 kb on + strand, within OHPLBJKB_01575at 1643.047 kb on - strand, within OHPLBJKB_01575at 1643.064 kb on + strand, within OHPLBJKB_01575at 1643.086 kb on - strand, within OHPLBJKB_01575at 1643.094 kb on + strand, within OHPLBJKB_01575at 1643.153 kb on + strandat 1643.153 kb on + strandat 1643.153 kb on + strandat 1643.153 kb on + strandat 1643.153 kb on + strandat 1643.153 kb on + strandat 1643.154 kb on - strandat 1643.154 kb on - strandat 1643.154 kb on - strandat 1643.154 kb on - strandat 1643.213 kb on + strandat 1643.213 kb on + strandat 1643.213 kb on + strandat 1643.213 kb on + strandat 1643.342 kb on + strandat 1643.343 kb on - strandat 1643.505 kb on - strand, within OHPLBJKB_01576at 1643.520 kb on + strand, within OHPLBJKB_01576at 1643.570 kb on - strand, within OHPLBJKB_01576at 1643.570 kb on - strand, within OHPLBJKB_01576at 1643.620 kb on + strand, within OHPLBJKB_01576at 1643.672 kb on - strand, within OHPLBJKB_01576at 1643.703 kb on - strand, within OHPLBJKB_01576at 1643.703 kb on - strand, within OHPLBJKB_01576at 1643.703 kb on - strand, within OHPLBJKB_01576at 1643.703 kb on - strand, within OHPLBJKB_01576at 1643.776 kb on - strand, within OHPLBJKB_01576at 1643.786 kb on + strand, within OHPLBJKB_01576at 1643.787 kb on - strand, within OHPLBJKB_01576at 1643.868 kb on - strand, within OHPLBJKB_01576at 1643.890 kb on + strand, within OHPLBJKB_01576at 1643.938 kb on + strand, within OHPLBJKB_01576at 1643.939 kb on - strand, within OHPLBJKB_01576at 1643.939 kb on - strand, within OHPLBJKB_01576at 1643.939 kb on - strand, within OHPLBJKB_01576at 1643.942 kb on + strand, within OHPLBJKB_01576at 1643.942 kb on + strand, within OHPLBJKB_01576at 1643.958 kb on - strand, within OHPLBJKB_01576at 1643.958 kb on - strand, within OHPLBJKB_01576at 1643.972 kb on + strand, within OHPLBJKB_01576at 1643.982 kb on + strand, within OHPLBJKB_01576at 1643.982 kb on + strand, within OHPLBJKB_01576at 1643.982 kb on + strand, within OHPLBJKB_01576at 1643.982 kb on + strand, within OHPLBJKB_01576at 1643.984 kb on + strand, within OHPLBJKB_01576at 1643.985 kb on - strand, within OHPLBJKB_01576at 1643.985 kb on - strand, within OHPLBJKB_01576at 1644.005 kb on + strand, within OHPLBJKB_01576at 1644.005 kb on + strand, within OHPLBJKB_01576at 1644.006 kb on - strand, within OHPLBJKB_01576at 1644.006 kb on - strand, within OHPLBJKB_01576at 1644.018 kb on + strand, within OHPLBJKB_01576at 1644.104 kb on + strand, within OHPLBJKB_01576at 1644.108 kb on - strand, within OHPLBJKB_01576at 1644.124 kb on + strand, within OHPLBJKB_01576at 1644.125 kb on - strand, within OHPLBJKB_01576at 1644.147 kb on + strand, within OHPLBJKB_01576at 1644.147 kb on + strand, within OHPLBJKB_01576at 1644.148 kb on - strand, within OHPLBJKB_01576at 1644.179 kb on + strand, within OHPLBJKB_01576at 1644.232 kb on - strandat 1644.232 kb on - strandat 1644.288 kb on + strandat 1644.289 kb on - strandat 1644.289 kb on - strandat 1644.438 kb on + strandat 1644.490 kb on + strandat 1644.544 kb on + strand, within OHPLBJKB_01577at 1644.545 kb on - strand, within OHPLBJKB_01577at 1644.545 kb on - strand, within OHPLBJKB_01577at 1644.548 kb on + strand, within OHPLBJKB_01577at 1644.548 kb on + strand, within OHPLBJKB_01577at 1644.549 kb on - strand, within OHPLBJKB_01577at 1644.566 kb on + strand, within OHPLBJKB_01577at 1644.566 kb on + strand, within OHPLBJKB_01577at 1644.566 kb on + strand, within OHPLBJKB_01577at 1644.567 kb on - strand, within OHPLBJKB_01577at 1644.567 kb on - strand, within OHPLBJKB_01577at 1644.567 kb on - strand, within OHPLBJKB_01577at 1644.573 kb on + strand, within OHPLBJKB_01577at 1644.574 kb on - strand, within OHPLBJKB_01577at 1644.574 kb on - strand, within OHPLBJKB_01577at 1644.574 kb on - strand, within OHPLBJKB_01577at 1644.574 kb on - strand, within OHPLBJKB_01577at 1644.626 kb on - strand, within OHPLBJKB_01577at 1644.749 kb on - strand, within OHPLBJKB_01577at 1644.749 kb on - strand, within OHPLBJKB_01577at 1644.778 kb on - strand, within OHPLBJKB_01577at 1644.812 kb on + strand, within OHPLBJKB_01577at 1644.881 kb on + strand, within OHPLBJKB_01577at 1644.886 kb on - strand, within OHPLBJKB_01577at 1644.913 kb on + strand, within OHPLBJKB_01577at 1645.053 kb on + strand, within OHPLBJKB_01577at 1645.053 kb on + strand, within OHPLBJKB_01577at 1645.054 kb on - strand, within OHPLBJKB_01577at 1645.101 kb on - strand, within OHPLBJKB_01577at 1645.101 kb on - strand, within OHPLBJKB_01577at 1645.101 kb on - strand, within OHPLBJKB_01577at 1645.101 kb on - strand, within OHPLBJKB_01577at 1645.101 kb on - strand, within OHPLBJKB_01577at 1645.104 kb on + strand, within OHPLBJKB_01577at 1645.116 kb on + strand, within OHPLBJKB_01577at 1645.116 kb on + strand, within OHPLBJKB_01577at 1645.116 kb on + strand, within OHPLBJKB_01577at 1645.116 kb on + strand, within OHPLBJKB_01577at 1645.116 kb on + strand, within OHPLBJKB_01577at 1645.117 kb on - strand, within OHPLBJKB_01577at 1645.117 kb on - strand, within OHPLBJKB_01577at 1645.117 kb on - strand, within OHPLBJKB_01577at 1645.117 kb on - strand, within OHPLBJKB_01577at 1645.117 kb on - strand, within OHPLBJKB_01577at 1645.117 kb on - strand, within OHPLBJKB_01577at 1645.117 kb on - strand, within OHPLBJKB_01577at 1645.117 kb on - strand, within OHPLBJKB_01577at 1645.117 kb on - strand, within OHPLBJKB_01577at 1645.117 kb on - strand, within OHPLBJKB_01577at 1645.118 kb on + strand, within OHPLBJKB_01577at 1645.119 kb on - strand, within OHPLBJKB_01577at 1645.119 kb on - strand, within OHPLBJKB_01577at 1645.119 kb on - strand, within OHPLBJKB_01577at 1645.119 kb on - strand, within OHPLBJKB_01577at 1645.119 kb on - strand, within OHPLBJKB_01577at 1645.119 kb on - strand, within OHPLBJKB_01577at 1645.119 kb on - strand, within OHPLBJKB_01577at 1645.119 kb on - strand, within OHPLBJKB_01577at 1645.119 kb on - strand, within OHPLBJKB_01577at 1645.119 kb on - strand, within OHPLBJKB_01577at 1645.158 kb on + strand, within OHPLBJKB_01577at 1645.206 kb on - strand, within OHPLBJKB_01577at 1645.239 kb on + strand, within OHPLBJKB_01577at 1645.249 kb on + strand, within OHPLBJKB_01577at 1645.249 kb on + strand, within OHPLBJKB_01577at 1645.250 kb on - strand, within OHPLBJKB_01577at 1645.250 kb on - strand, within OHPLBJKB_01577

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
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1,642,399 + +0.2
1,642,400 - +1.3
1,642,400 - -1.4
1,642,400 - -0.1
1,642,400 - -0.2
1,642,415 + -0.4
1,642,415 + +0.8
1,642,457 + +1.4
1,642,463 + -0.9
1,642,463 + -2.0
1,642,463 + -0.2
1,642,464 - -1.7
1,642,464 - -1.3
1,642,464 - +1.2
1,642,464 - +1.9
1,642,464 - -0.4
1,642,498 + -2.1
1,642,498 + +1.1
1,642,517 + -0.7
1,642,518 - -0.9
1,642,552 + +2.1
1,642,552 + +0.6
1,642,553 - -0.8
1,642,553 - -0.2
1,642,553 - -0.8
1,642,553 - -0.4
1,642,553 - -1.9
1,642,554 + +0.4
1,642,554 + +0.3
1,642,555 - -0.7
1,642,555 - -1.9
1,642,555 - -0.3
1,642,555 - -1.0
1,642,650 + -0.4
1,642,681 + OHPLBJKB_01575 0.14 +0.3
1,642,682 - OHPLBJKB_01575 0.14 -0.6
1,642,740 + OHPLBJKB_01575 0.24 +7.6
1,642,784 + OHPLBJKB_01575 0.32 +1.6
1,642,830 + OHPLBJKB_01575 0.40 -0.1
1,642,831 - OHPLBJKB_01575 0.40 -1.4
1,643,021 - OHPLBJKB_01575 0.72 -0.3
1,643,046 + OHPLBJKB_01575 0.76 -0.0
1,643,047 - OHPLBJKB_01575 0.77 -0.6
1,643,064 + OHPLBJKB_01575 0.79 +0.2
1,643,086 - OHPLBJKB_01575 0.83 -1.8
1,643,094 + OHPLBJKB_01575 0.85 +1.6
1,643,153 + -2.4
1,643,153 + +0.3
1,643,153 + +1.3
1,643,153 + -0.2
1,643,153 + -0.5
1,643,153 + -1.6
1,643,154 - -0.3
1,643,154 - -2.4
1,643,154 - +2.4
1,643,154 - +0.2
1,643,213 + -1.2
1,643,213 + -0.6
1,643,213 + +1.1
1,643,213 + -1.3
1,643,342 + +0.8
1,643,343 - +1.8
1,643,505 - OHPLBJKB_01576 0.16 +0.2
1,643,520 + OHPLBJKB_01576 0.17 +0.5
1,643,570 - OHPLBJKB_01576 0.23 +0.3
1,643,570 - OHPLBJKB_01576 0.23 +0.3
1,643,620 + OHPLBJKB_01576 0.28 -1.5
1,643,672 - OHPLBJKB_01576 0.34 -0.6
1,643,703 - OHPLBJKB_01576 0.37 +1.4
1,643,703 - OHPLBJKB_01576 0.37 -0.8
1,643,703 - OHPLBJKB_01576 0.37 +0.7
1,643,703 - OHPLBJKB_01576 0.37 -1.2
1,643,776 - OHPLBJKB_01576 0.45 -1.8
1,643,786 + OHPLBJKB_01576 0.46 -1.6
1,643,787 - OHPLBJKB_01576 0.46 -1.2
1,643,868 - OHPLBJKB_01576 0.55 +0.2
1,643,890 + OHPLBJKB_01576 0.57 +1.2
1,643,938 + OHPLBJKB_01576 0.62 +0.9
1,643,939 - OHPLBJKB_01576 0.62 -2.2
1,643,939 - OHPLBJKB_01576 0.62 +0.9
1,643,939 - OHPLBJKB_01576 0.62 +0.1
1,643,942 + OHPLBJKB_01576 0.63 -0.8
1,643,942 + OHPLBJKB_01576 0.63 -0.3
1,643,958 - OHPLBJKB_01576 0.64 -1.6
1,643,958 - OHPLBJKB_01576 0.64 +0.6
1,643,972 + OHPLBJKB_01576 0.66 -0.1
1,643,982 + OHPLBJKB_01576 0.67 -1.0
1,643,982 + OHPLBJKB_01576 0.67 -1.2
1,643,982 + OHPLBJKB_01576 0.67 -1.1
1,643,982 + OHPLBJKB_01576 0.67 -1.2
1,643,984 + OHPLBJKB_01576 0.67 -0.2
1,643,985 - OHPLBJKB_01576 0.67 -0.3
1,643,985 - OHPLBJKB_01576 0.67 -2.0
1,644,005 + OHPLBJKB_01576 0.69 -0.2
1,644,005 + OHPLBJKB_01576 0.69 -0.4
1,644,006 - OHPLBJKB_01576 0.69 -1.9
1,644,006 - OHPLBJKB_01576 0.69 +1.0
1,644,018 + OHPLBJKB_01576 0.71 -1.1
1,644,104 + OHPLBJKB_01576 0.80 -0.7
1,644,108 - OHPLBJKB_01576 0.80 -1.8
1,644,124 + OHPLBJKB_01576 0.82 -1.7
1,644,125 - OHPLBJKB_01576 0.82 -0.0
1,644,147 + OHPLBJKB_01576 0.85 -1.3
1,644,147 + OHPLBJKB_01576 0.85 -1.0
1,644,148 - OHPLBJKB_01576 0.85 +0.2
1,644,179 + OHPLBJKB_01576 0.88 -0.4
1,644,232 - +0.7
1,644,232 - +0.5
1,644,288 + -2.3
1,644,289 - -0.2
1,644,289 - +0.8
1,644,438 + +3.1
1,644,490 + -0.6
1,644,544 + OHPLBJKB_01577 0.13 +0.9
1,644,545 - OHPLBJKB_01577 0.13 -1.3
1,644,545 - OHPLBJKB_01577 0.13 +0.3
1,644,548 + OHPLBJKB_01577 0.13 +0.2
1,644,548 + OHPLBJKB_01577 0.13 +0.6
1,644,549 - OHPLBJKB_01577 0.13 +1.0
1,644,566 + OHPLBJKB_01577 0.14 -1.0
1,644,566 + OHPLBJKB_01577 0.14 -0.3
1,644,566 + OHPLBJKB_01577 0.14 -1.6
1,644,567 - OHPLBJKB_01577 0.14 -0.1
1,644,567 - OHPLBJKB_01577 0.14 -0.8
1,644,567 - OHPLBJKB_01577 0.14 -0.1
1,644,573 + OHPLBJKB_01577 0.14 -1.9
1,644,574 - OHPLBJKB_01577 0.14 +0.4
1,644,574 - OHPLBJKB_01577 0.14 -1.1
1,644,574 - OHPLBJKB_01577 0.14 -0.0
1,644,574 - OHPLBJKB_01577 0.14 -1.9
1,644,626 - OHPLBJKB_01577 0.17 -0.4
1,644,749 - OHPLBJKB_01577 0.25 -0.8
1,644,749 - OHPLBJKB_01577 0.25 -2.6
1,644,778 - OHPLBJKB_01577 0.26 -1.6
1,644,812 + OHPLBJKB_01577 0.28 -0.2
1,644,881 + OHPLBJKB_01577 0.32 -2.3
1,644,886 - OHPLBJKB_01577 0.33 -2.5
1,644,913 + OHPLBJKB_01577 0.34 -0.3
1,645,053 + OHPLBJKB_01577 0.42 +0.4
1,645,053 + OHPLBJKB_01577 0.42 -0.4
1,645,054 - OHPLBJKB_01577 0.42 -0.2
1,645,101 - OHPLBJKB_01577 0.45 -2.3
1,645,101 - OHPLBJKB_01577 0.45 -0.7
1,645,101 - OHPLBJKB_01577 0.45 -0.3
1,645,101 - OHPLBJKB_01577 0.45 -1.1
1,645,101 - OHPLBJKB_01577 0.45 -0.9
1,645,104 + OHPLBJKB_01577 0.45 +0.6
1,645,116 + OHPLBJKB_01577 0.46 -0.8
1,645,116 + OHPLBJKB_01577 0.46 -0.8
1,645,116 + OHPLBJKB_01577 0.46 -1.1
1,645,116 + OHPLBJKB_01577 0.46 +0.4
1,645,116 + OHPLBJKB_01577 0.46 -0.8
1,645,117 - OHPLBJKB_01577 0.46 +1.9
1,645,117 - OHPLBJKB_01577 0.46 -0.1
1,645,117 - OHPLBJKB_01577 0.46 +0.7
1,645,117 - OHPLBJKB_01577 0.46 -1.1
1,645,117 - OHPLBJKB_01577 0.46 -0.8
1,645,117 - OHPLBJKB_01577 0.46 -2.2
1,645,117 - OHPLBJKB_01577 0.46 +0.4
1,645,117 - OHPLBJKB_01577 0.46 +0.2
1,645,117 - OHPLBJKB_01577 0.46 -1.5
1,645,117 - OHPLBJKB_01577 0.46 +0.7
1,645,118 + OHPLBJKB_01577 0.46 +1.0
1,645,119 - OHPLBJKB_01577 0.46 +0.1
1,645,119 - OHPLBJKB_01577 0.46 +0.4
1,645,119 - OHPLBJKB_01577 0.46 +0.8
1,645,119 - OHPLBJKB_01577 0.46 +0.2
1,645,119 - OHPLBJKB_01577 0.46 -0.4
1,645,119 - OHPLBJKB_01577 0.46 -2.4
1,645,119 - OHPLBJKB_01577 0.46 +1.1
1,645,119 - OHPLBJKB_01577 0.46 -1.1
1,645,119 - OHPLBJKB_01577 0.46 +0.4
1,645,119 - OHPLBJKB_01577 0.46 +0.1
1,645,158 + OHPLBJKB_01577 0.48 +1.1
1,645,206 - OHPLBJKB_01577 0.51 -1.7
1,645,239 + OHPLBJKB_01577 0.53 +0.6
1,645,249 + OHPLBJKB_01577 0.54 +0.3
1,645,249 + OHPLBJKB_01577 0.54 -0.1
1,645,250 - OHPLBJKB_01577 0.54 -1.0
1,645,250 - OHPLBJKB_01577 0.54 -0.7

Or see this region's nucleotide sequence