Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00540

Experiment: bur MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00539 and OHPLBJKB_00540 are separated by 117 nucleotidesOHPLBJKB_00540 and OHPLBJKB_00541 are separated by 80 nucleotidesOHPLBJKB_00541 and OHPLBJKB_00542 are separated by 8 nucleotides OHPLBJKB_00539: OHPLBJKB_00539 - Tryptophan-specific transport protein, at 554,158 to 555,402 _00539 OHPLBJKB_00540: OHPLBJKB_00540 - hypothetical protein, at 555,520 to 556,527 _00540 OHPLBJKB_00541: OHPLBJKB_00541 - hypothetical protein, at 556,608 to 557,486 _00541 OHPLBJKB_00542: OHPLBJKB_00542 - putative protease YhbU, at 557,495 to 558,490 _00542 Position (kb) 555 556 557Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 554.593 kb on - strand, within OHPLBJKB_00539at 554.593 kb on - strand, within OHPLBJKB_00539at 554.595 kb on + strand, within OHPLBJKB_00539at 554.595 kb on + strand, within OHPLBJKB_00539at 554.596 kb on - strand, within OHPLBJKB_00539at 554.725 kb on + strand, within OHPLBJKB_00539at 554.726 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.875 kb on + strand, within OHPLBJKB_00539at 554.877 kb on + strand, within OHPLBJKB_00539at 554.877 kb on + strand, within OHPLBJKB_00539at 554.975 kb on + strand, within OHPLBJKB_00539at 554.976 kb on - strand, within OHPLBJKB_00539at 554.976 kb on - strand, within OHPLBJKB_00539at 555.194 kb on - strand, within OHPLBJKB_00539at 555.206 kb on - strand, within OHPLBJKB_00539at 555.270 kb on + strand, within OHPLBJKB_00539at 555.322 kb on - strandat 555.363 kb on + strandat 555.379 kb on - strandat 555.394 kb on + strandat 555.460 kb on + strandat 555.461 kb on - strandat 555.469 kb on + strandat 555.469 kb on + strandat 555.470 kb on - strandat 555.685 kb on - strand, within OHPLBJKB_00540at 555.685 kb on - strand, within OHPLBJKB_00540at 555.685 kb on - strand, within OHPLBJKB_00540at 555.708 kb on - strand, within OHPLBJKB_00540at 555.849 kb on + strand, within OHPLBJKB_00540at 555.852 kb on + strand, within OHPLBJKB_00540at 555.853 kb on - strand, within OHPLBJKB_00540at 555.872 kb on + strand, within OHPLBJKB_00540at 555.940 kb on - strand, within OHPLBJKB_00540at 556.004 kb on + strand, within OHPLBJKB_00540at 556.129 kb on - strand, within OHPLBJKB_00540at 556.146 kb on + strand, within OHPLBJKB_00540at 556.146 kb on + strand, within OHPLBJKB_00540at 556.147 kb on - strand, within OHPLBJKB_00540at 556.147 kb on - strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.231 kb on - strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.234 kb on - strand, within OHPLBJKB_00540at 556.234 kb on - strand, within OHPLBJKB_00540at 556.275 kb on + strand, within OHPLBJKB_00540at 556.317 kb on + strand, within OHPLBJKB_00540at 556.339 kb on + strand, within OHPLBJKB_00540at 556.340 kb on - strand, within OHPLBJKB_00540at 556.340 kb on - strand, within OHPLBJKB_00540at 556.374 kb on + strand, within OHPLBJKB_00540at 556.374 kb on + strand, within OHPLBJKB_00540at 556.375 kb on - strand, within OHPLBJKB_00540at 556.375 kb on - strand, within OHPLBJKB_00540at 556.397 kb on + strand, within OHPLBJKB_00540at 556.407 kb on - strand, within OHPLBJKB_00540at 556.518 kb on + strandat 556.557 kb on + strandat 556.560 kb on + strandat 556.561 kb on - strandat 556.576 kb on - strandat 556.580 kb on - strandat 556.601 kb on + strandat 556.601 kb on + strandat 556.645 kb on + strandat 556.652 kb on + strandat 556.804 kb on + strand, within OHPLBJKB_00541at 556.804 kb on + strand, within OHPLBJKB_00541at 556.805 kb on - strand, within OHPLBJKB_00541at 556.839 kb on + strand, within OHPLBJKB_00541at 556.892 kb on + strand, within OHPLBJKB_00541at 556.892 kb on + strand, within OHPLBJKB_00541at 556.893 kb on - strand, within OHPLBJKB_00541at 557.036 kb on + strand, within OHPLBJKB_00541at 557.078 kb on + strand, within OHPLBJKB_00541at 557.079 kb on - strand, within OHPLBJKB_00541at 557.109 kb on + strand, within OHPLBJKB_00541at 557.109 kb on + strand, within OHPLBJKB_00541at 557.132 kb on - strand, within OHPLBJKB_00541at 557.132 kb on - strand, within OHPLBJKB_00541at 557.132 kb on - strand, within OHPLBJKB_00541at 557.183 kb on + strand, within OHPLBJKB_00541at 557.183 kb on + strand, within OHPLBJKB_00541at 557.236 kb on + strand, within OHPLBJKB_00541at 557.236 kb on + strand, within OHPLBJKB_00541at 557.389 kb on + strand, within OHPLBJKB_00541at 557.389 kb on + strand, within OHPLBJKB_00541at 557.390 kb on - strand, within OHPLBJKB_00541at 557.480 kb on - strandat 557.480 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
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554,593 - OHPLBJKB_00539 0.35 -0.9
554,593 - OHPLBJKB_00539 0.35 -1.1
554,595 + OHPLBJKB_00539 0.35 -0.8
554,595 + OHPLBJKB_00539 0.35 -1.0
554,596 - OHPLBJKB_00539 0.35 +0.3
554,725 + OHPLBJKB_00539 0.46 +1.9
554,726 - OHPLBJKB_00539 0.46 +0.2
554,807 - OHPLBJKB_00539 0.52 +2.7
554,807 - OHPLBJKB_00539 0.52 -1.1
554,807 - OHPLBJKB_00539 0.52 +2.4
554,807 - OHPLBJKB_00539 0.52 +0.1
554,875 + OHPLBJKB_00539 0.58 -1.0
554,877 + OHPLBJKB_00539 0.58 -2.2
554,877 + OHPLBJKB_00539 0.58 -0.7
554,975 + OHPLBJKB_00539 0.66 +2.2
554,976 - OHPLBJKB_00539 0.66 -0.1
554,976 - OHPLBJKB_00539 0.66 +0.8
555,194 - OHPLBJKB_00539 0.83 -0.8
555,206 - OHPLBJKB_00539 0.84 -1.4
555,270 + OHPLBJKB_00539 0.89 +0.2
555,322 - -0.6
555,363 + -0.0
555,379 - +0.2
555,394 + -0.8
555,460 + -0.0
555,461 - -1.4
555,469 + -0.5
555,469 + +0.2
555,470 - +0.9
555,685 - OHPLBJKB_00540 0.16 +1.9
555,685 - OHPLBJKB_00540 0.16 +0.3
555,685 - OHPLBJKB_00540 0.16 -1.8
555,708 - OHPLBJKB_00540 0.19 -0.5
555,849 + OHPLBJKB_00540 0.33 +0.9
555,852 + OHPLBJKB_00540 0.33 +0.1
555,853 - OHPLBJKB_00540 0.33 -2.1
555,872 + OHPLBJKB_00540 0.35 -1.5
555,940 - OHPLBJKB_00540 0.42 +0.4
556,004 + OHPLBJKB_00540 0.48 +1.5
556,129 - OHPLBJKB_00540 0.60 -0.6
556,146 + OHPLBJKB_00540 0.62 +1.2
556,146 + OHPLBJKB_00540 0.62 -1.4
556,147 - OHPLBJKB_00540 0.62 +0.1
556,147 - OHPLBJKB_00540 0.62 +1.0
556,230 + OHPLBJKB_00540 0.70 -0.3
556,230 + OHPLBJKB_00540 0.70 +0.8
556,230 + OHPLBJKB_00540 0.70 +0.6
556,230 + OHPLBJKB_00540 0.70 -0.6
556,230 + OHPLBJKB_00540 0.70 -1.0
556,231 - OHPLBJKB_00540 0.71 +0.4
556,233 + OHPLBJKB_00540 0.71 -0.4
556,233 + OHPLBJKB_00540 0.71 -1.1
556,233 + OHPLBJKB_00540 0.71 +0.5
556,233 + OHPLBJKB_00540 0.71 -1.5
556,233 + OHPLBJKB_00540 0.71 +0.2
556,234 - OHPLBJKB_00540 0.71 +0.2
556,234 - OHPLBJKB_00540 0.71 -0.1
556,275 + OHPLBJKB_00540 0.75 +1.1
556,317 + OHPLBJKB_00540 0.79 -0.7
556,339 + OHPLBJKB_00540 0.81 +0.6
556,340 - OHPLBJKB_00540 0.81 -0.4
556,340 - OHPLBJKB_00540 0.81 +0.4
556,374 + OHPLBJKB_00540 0.85 -0.5
556,374 + OHPLBJKB_00540 0.85 -1.8
556,375 - OHPLBJKB_00540 0.85 +1.2
556,375 - OHPLBJKB_00540 0.85 -0.2
556,397 + OHPLBJKB_00540 0.87 -1.7
556,407 - OHPLBJKB_00540 0.88 -1.8
556,518 + -0.1
556,557 + -0.3
556,560 + +0.9
556,561 - +1.1
556,576 - -1.0
556,580 - -1.7
556,601 + -0.6
556,601 + -0.1
556,645 + +0.2
556,652 + -0.1
556,804 + OHPLBJKB_00541 0.22 -0.1
556,804 + OHPLBJKB_00541 0.22 +1.4
556,805 - OHPLBJKB_00541 0.22 +0.8
556,839 + OHPLBJKB_00541 0.26 +0.8
556,892 + OHPLBJKB_00541 0.32 -0.0
556,892 + OHPLBJKB_00541 0.32 -0.2
556,893 - OHPLBJKB_00541 0.32 -0.0
557,036 + OHPLBJKB_00541 0.49 -1.3
557,078 + OHPLBJKB_00541 0.53 +0.6
557,079 - OHPLBJKB_00541 0.54 -1.6
557,109 + OHPLBJKB_00541 0.57 -0.5
557,109 + OHPLBJKB_00541 0.57 -2.3
557,132 - OHPLBJKB_00541 0.60 -0.8
557,132 - OHPLBJKB_00541 0.60 -1.1
557,132 - OHPLBJKB_00541 0.60 +1.6
557,183 + OHPLBJKB_00541 0.65 -0.2
557,183 + OHPLBJKB_00541 0.65 -1.8
557,236 + OHPLBJKB_00541 0.71 +1.0
557,236 + OHPLBJKB_00541 0.71 -0.0
557,389 + OHPLBJKB_00541 0.89 -0.0
557,389 + OHPLBJKB_00541 0.89 -0.7
557,390 - OHPLBJKB_00541 0.89 -1.3
557,480 - -1.6
557,480 - +4.4

Or see this region's nucleotide sequence