Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00071

Experiment: bur MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00070 and OHPLBJKB_00071 overlap by 4 nucleotidesOHPLBJKB_00071 and OHPLBJKB_00072 overlap by 8 nucleotidesOHPLBJKB_00072 and OHPLBJKB_00073 are separated by 15 nucleotides OHPLBJKB_00070: OHPLBJKB_00070 - Lipopolysaccharide core heptosyltransferase RfaQ, at 73,193 to 74,251 _00070 OHPLBJKB_00071: OHPLBJKB_00071 - Lipopolysaccharide core biosynthesis protein RfaG, at 74,248 to 75,372 _00071 OHPLBJKB_00072: OHPLBJKB_00072 - Lipopolysaccharide core heptose(I) kinase RfaP, at 75,365 to 76,162 _00072 OHPLBJKB_00073: OHPLBJKB_00073 - hypothetical protein, at 76,178 to 77,194 _00073 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 73.254 kb on + strandat 73.254 kb on + strandat 73.254 kb on + strandat 73.258 kb on + strandat 73.270 kb on + strandat 73.270 kb on + strandat 73.271 kb on - strandat 73.437 kb on + strand, within OHPLBJKB_00070at 73.437 kb on + strand, within OHPLBJKB_00070at 73.438 kb on - strand, within OHPLBJKB_00070at 73.441 kb on - strand, within OHPLBJKB_00070at 73.441 kb on - strand, within OHPLBJKB_00070at 73.441 kb on - strand, within OHPLBJKB_00070at 73.450 kb on + strand, within OHPLBJKB_00070at 73.450 kb on + strand, within OHPLBJKB_00070at 73.454 kb on + strand, within OHPLBJKB_00070at 73.495 kb on + strand, within OHPLBJKB_00070at 73.495 kb on + strand, within OHPLBJKB_00070at 73.495 kb on + strand, within OHPLBJKB_00070at 73.495 kb on + strand, within OHPLBJKB_00070at 73.496 kb on - strand, within OHPLBJKB_00070at 73.496 kb on - strand, within OHPLBJKB_00070at 73.512 kb on + strand, within OHPLBJKB_00070at 73.541 kb on + strand, within OHPLBJKB_00070at 73.621 kb on + strand, within OHPLBJKB_00070at 73.626 kb on + strand, within OHPLBJKB_00070at 73.705 kb on + strand, within OHPLBJKB_00070at 73.705 kb on + strand, within OHPLBJKB_00070at 73.745 kb on + strand, within OHPLBJKB_00070at 73.745 kb on + strand, within OHPLBJKB_00070at 73.746 kb on - strand, within OHPLBJKB_00070at 73.824 kb on + strand, within OHPLBJKB_00070at 73.824 kb on + strand, within OHPLBJKB_00070at 73.824 kb on + strand, within OHPLBJKB_00070at 73.825 kb on - strand, within OHPLBJKB_00070at 73.825 kb on - strand, within OHPLBJKB_00070at 73.825 kb on - strand, within OHPLBJKB_00070at 73.825 kb on - strand, within OHPLBJKB_00070at 73.825 kb on - strand, within OHPLBJKB_00070at 73.825 kb on - strand, within OHPLBJKB_00070at 73.825 kb on - strand, within OHPLBJKB_00070at 74.032 kb on + strand, within OHPLBJKB_00070at 74.032 kb on + strand, within OHPLBJKB_00070at 74.035 kb on + strand, within OHPLBJKB_00070at 74.036 kb on - strand, within OHPLBJKB_00070at 74.071 kb on + strand, within OHPLBJKB_00070at 74.095 kb on + strand, within OHPLBJKB_00070at 74.095 kb on + strand, within OHPLBJKB_00070at 74.169 kb on - strandat 74.218 kb on - strandat 74.239 kb on + strandat 74.239 kb on + strandat 74.239 kb on + strandat 74.239 kb on + strandat 74.247 kb on + strandat 74.836 kb on + strand, within OHPLBJKB_00071at 74.836 kb on + strand, within OHPLBJKB_00071at 74.840 kb on + strand, within OHPLBJKB_00071at 74.840 kb on + strand, within OHPLBJKB_00071at 75.306 kb on + strandat 75.317 kb on + strandat 75.317 kb on + strandat 75.319 kb on + strandat 75.427 kb on + strandat 75.503 kb on + strand, within OHPLBJKB_00072at 75.543 kb on + strand, within OHPLBJKB_00072at 75.579 kb on + strand, within OHPLBJKB_00072at 75.637 kb on + strand, within OHPLBJKB_00072at 75.637 kb on + strand, within OHPLBJKB_00072at 75.637 kb on + strand, within OHPLBJKB_00072at 75.637 kb on + strand, within OHPLBJKB_00072at 75.641 kb on + strand, within OHPLBJKB_00072at 75.641 kb on + strand, within OHPLBJKB_00072at 75.723 kb on + strand, within OHPLBJKB_00072at 75.790 kb on + strand, within OHPLBJKB_00072at 75.790 kb on + strand, within OHPLBJKB_00072at 75.854 kb on + strand, within OHPLBJKB_00072at 75.854 kb on + strand, within OHPLBJKB_00072at 75.854 kb on + strand, within OHPLBJKB_00072at 75.856 kb on + strand, within OHPLBJKB_00072at 75.856 kb on + strand, within OHPLBJKB_00072at 75.856 kb on + strand, within OHPLBJKB_00072at 75.856 kb on + strand, within OHPLBJKB_00072at 76.339 kb on + strand, within OHPLBJKB_00073

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
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73,254 + -1.9
73,254 + -0.3
73,254 + -0.8
73,258 + -0.8
73,270 + +0.5
73,270 + -1.9
73,271 - +1.5
73,437 + OHPLBJKB_00070 0.23 -0.0
73,437 + OHPLBJKB_00070 0.23 -2.6
73,438 - OHPLBJKB_00070 0.23 -1.4
73,441 - OHPLBJKB_00070 0.23 +0.5
73,441 - OHPLBJKB_00070 0.23 -0.3
73,441 - OHPLBJKB_00070 0.23 +0.9
73,450 + OHPLBJKB_00070 0.24 +0.6
73,450 + OHPLBJKB_00070 0.24 -0.9
73,454 + OHPLBJKB_00070 0.25 +2.5
73,495 + OHPLBJKB_00070 0.29 -0.5
73,495 + OHPLBJKB_00070 0.29 -2.0
73,495 + OHPLBJKB_00070 0.29 -1.8
73,495 + OHPLBJKB_00070 0.29 +0.5
73,496 - OHPLBJKB_00070 0.29 +0.5
73,496 - OHPLBJKB_00070 0.29 +0.9
73,512 + OHPLBJKB_00070 0.30 -2.0
73,541 + OHPLBJKB_00070 0.33 +0.5
73,621 + OHPLBJKB_00070 0.40 -0.1
73,626 + OHPLBJKB_00070 0.41 +0.6
73,705 + OHPLBJKB_00070 0.48 +1.9
73,705 + OHPLBJKB_00070 0.48 -0.4
73,745 + OHPLBJKB_00070 0.52 -0.9
73,745 + OHPLBJKB_00070 0.52 -1.3
73,746 - OHPLBJKB_00070 0.52 +0.9
73,824 + OHPLBJKB_00070 0.60 -0.3
73,824 + OHPLBJKB_00070 0.60 -0.4
73,824 + OHPLBJKB_00070 0.60 +0.8
73,825 - OHPLBJKB_00070 0.60 -0.5
73,825 - OHPLBJKB_00070 0.60 -0.1
73,825 - OHPLBJKB_00070 0.60 +1.5
73,825 - OHPLBJKB_00070 0.60 +0.5
73,825 - OHPLBJKB_00070 0.60 +1.3
73,825 - OHPLBJKB_00070 0.60 +0.2
73,825 - OHPLBJKB_00070 0.60 +1.5
74,032 + OHPLBJKB_00070 0.79 -1.6
74,032 + OHPLBJKB_00070 0.79 -1.2
74,035 + OHPLBJKB_00070 0.80 -0.8
74,036 - OHPLBJKB_00070 0.80 -1.2
74,071 + OHPLBJKB_00070 0.83 +0.6
74,095 + OHPLBJKB_00070 0.85 -0.6
74,095 + OHPLBJKB_00070 0.85 +0.9
74,169 - +1.5
74,218 - +0.9
74,239 + -1.3
74,239 + -1.7
74,239 + -0.6
74,239 + -1.7
74,247 + -0.8
74,836 + OHPLBJKB_00071 0.52 +1.5
74,836 + OHPLBJKB_00071 0.52 +0.9
74,840 + OHPLBJKB_00071 0.53 -1.9
74,840 + OHPLBJKB_00071 0.53 -1.2
75,306 + -0.5
75,317 + -0.2
75,317 + -1.4
75,319 + -0.5
75,427 + +0.5
75,503 + OHPLBJKB_00072 0.17 -1.1
75,543 + OHPLBJKB_00072 0.22 -1.1
75,579 + OHPLBJKB_00072 0.27 -0.1
75,637 + OHPLBJKB_00072 0.34 -0.3
75,637 + OHPLBJKB_00072 0.34 -0.7
75,637 + OHPLBJKB_00072 0.34 +0.2
75,637 + OHPLBJKB_00072 0.34 +0.5
75,641 + OHPLBJKB_00072 0.35 -0.1
75,641 + OHPLBJKB_00072 0.35 +0.2
75,723 + OHPLBJKB_00072 0.45 -1.2
75,790 + OHPLBJKB_00072 0.53 +0.2
75,790 + OHPLBJKB_00072 0.53 +1.5
75,854 + OHPLBJKB_00072 0.61 -2.0
75,854 + OHPLBJKB_00072 0.61 -1.3
75,854 + OHPLBJKB_00072 0.61 +0.2
75,856 + OHPLBJKB_00072 0.62 -0.5
75,856 + OHPLBJKB_00072 0.62 -0.1
75,856 + OHPLBJKB_00072 0.62 +0.5
75,856 + OHPLBJKB_00072 0.62 -0.8
76,339 + OHPLBJKB_00073 0.16 -0.1

Or see this region's nucleotide sequence