Strain Fitness in Escherichia fergusonii Becca around EFB2_04909

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_04907 and EFB2_04908 are separated by 90 nucleotidesEFB2_04908 and EFB2_04909 are separated by 14 nucleotidesEFB2_04909 and EFB2_04910 are separated by 285 nucleotides EFB2_04907: EFB2_04907 - Phosphate transport system permease protein PstA, at 5,165,008 to 5,165,898 _04907 EFB2_04908: EFB2_04908 - Phosphate import ATP-binding protein PstB, at 5,165,989 to 5,166,762 _04908 EFB2_04909: EFB2_04909 - Phosphate-specific transport system accessory protein PhoU, at 5,166,777 to 5,167,502 _04909 EFB2_04910: EFB2_04910 - Cryptic beta-glucoside bgl operon antiterminator, at 5,167,788 to 5,168,624 _04910 Position (kb) 5166 5167 5168Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5165.832 kb on + strandat 5165.832 kb on + strandat 5165.843 kb on + strandat 5165.843 kb on + strandat 5165.886 kb on + strandat 5165.886 kb on + strandat 5165.886 kb on + strandat 5165.896 kb on + strandat 5165.918 kb on + strandat 5165.927 kb on + strandat 5165.941 kb on + strandat 5165.941 kb on + strandat 5165.941 kb on + strandat 5165.941 kb on + strandat 5166.310 kb on + strand, within EFB2_04908at 5166.310 kb on + strand, within EFB2_04908at 5166.477 kb on + strand, within EFB2_04908at 5166.660 kb on + strand, within EFB2_04908at 5166.660 kb on + strand, within EFB2_04908at 5166.664 kb on + strand, within EFB2_04908at 5166.739 kb on + strandat 5166.739 kb on + strandat 5166.754 kb on + strandat 5167.496 kb on + strandat 5167.501 kb on - strandat 5167.546 kb on + strandat 5167.645 kb on + strandat 5167.732 kb on + strandat 5167.733 kb on - strandat 5167.744 kb on - strandat 5167.744 kb on - strandat 5167.770 kb on - strandat 5167.771 kb on + strandat 5167.821 kb on - strandat 5167.821 kb on - strandat 5167.910 kb on + strand, within EFB2_04910at 5167.910 kb on + strand, within EFB2_04910at 5167.911 kb on - strand, within EFB2_04910at 5167.911 kb on - strand, within EFB2_04910at 5167.911 kb on - strand, within EFB2_04910at 5167.935 kb on + strand, within EFB2_04910at 5167.935 kb on + strand, within EFB2_04910at 5167.935 kb on + strand, within EFB2_04910at 5167.981 kb on + strand, within EFB2_04910at 5167.981 kb on + strand, within EFB2_04910at 5167.982 kb on - strand, within EFB2_04910at 5167.982 kb on - strand, within EFB2_04910at 5167.982 kb on - strand, within EFB2_04910at 5167.988 kb on + strand, within EFB2_04910at 5167.988 kb on + strand, within EFB2_04910at 5167.988 kb on + strand, within EFB2_04910at 5167.988 kb on + strand, within EFB2_04910at 5167.988 kb on + strand, within EFB2_04910at 5167.988 kb on + strand, within EFB2_04910at 5167.988 kb on + strand, within EFB2_04910at 5167.988 kb on + strand, within EFB2_04910at 5167.988 kb on + strand, within EFB2_04910at 5167.988 kb on + strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5167.989 kb on - strand, within EFB2_04910at 5168.021 kb on + strand, within EFB2_04910at 5168.021 kb on + strand, within EFB2_04910at 5168.021 kb on + strand, within EFB2_04910at 5168.021 kb on + strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.022 kb on - strand, within EFB2_04910at 5168.024 kb on + strand, within EFB2_04910at 5168.024 kb on + strand, within EFB2_04910at 5168.024 kb on + strand, within EFB2_04910at 5168.024 kb on + strand, within EFB2_04910at 5168.024 kb on + strand, within EFB2_04910at 5168.024 kb on + strand, within EFB2_04910at 5168.024 kb on + strand, within EFB2_04910at 5168.024 kb on + strand, within EFB2_04910at 5168.024 kb on + strand, within EFB2_04910at 5168.024 kb on + strand, within EFB2_04910at 5168.025 kb on - strand, within EFB2_04910at 5168.025 kb on - strand, within EFB2_04910at 5168.025 kb on - strand, within EFB2_04910at 5168.025 kb on - strand, within EFB2_04910at 5168.025 kb on - strand, within EFB2_04910at 5168.025 kb on - strand, within EFB2_04910at 5168.025 kb on - strand, within EFB2_04910at 5168.025 kb on - strand, within EFB2_04910at 5168.066 kb on + strand, within EFB2_04910at 5168.066 kb on + strand, within EFB2_04910at 5168.066 kb on + strand, within EFB2_04910at 5168.066 kb on + strand, within EFB2_04910at 5168.066 kb on + strand, within EFB2_04910at 5168.066 kb on + strand, within EFB2_04910at 5168.066 kb on + strand, within EFB2_04910at 5168.066 kb on + strand, within EFB2_04910at 5168.067 kb on - strand, within EFB2_04910at 5168.067 kb on - strand, within EFB2_04910at 5168.067 kb on - strand, within EFB2_04910at 5168.067 kb on - strand, within EFB2_04910at 5168.067 kb on - strand, within EFB2_04910at 5168.067 kb on - strand, within EFB2_04910at 5168.067 kb on - strand, within EFB2_04910at 5168.067 kb on - strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.070 kb on + strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.071 kb on - strand, within EFB2_04910at 5168.072 kb on + strand, within EFB2_04910at 5168.072 kb on + strand, within EFB2_04910at 5168.073 kb on - strand, within EFB2_04910at 5168.073 kb on - strand, within EFB2_04910at 5168.073 kb on - strand, within EFB2_04910at 5168.073 kb on - strand, within EFB2_04910at 5168.081 kb on - strand, within EFB2_04910at 5168.105 kb on + strand, within EFB2_04910at 5168.105 kb on + strand, within EFB2_04910at 5168.128 kb on + strand, within EFB2_04910at 5168.129 kb on - strand, within EFB2_04910at 5168.129 kb on - strand, within EFB2_04910at 5168.185 kb on + strand, within EFB2_04910at 5168.185 kb on + strand, within EFB2_04910at 5168.186 kb on - strand, within EFB2_04910at 5168.208 kb on - strand, within EFB2_04910at 5168.233 kb on + strand, within EFB2_04910at 5168.255 kb on + strand, within EFB2_04910at 5168.256 kb on - strand, within EFB2_04910at 5168.295 kb on - strand, within EFB2_04910at 5168.323 kb on + strand, within EFB2_04910at 5168.324 kb on - strand, within EFB2_04910at 5168.324 kb on - strand, within EFB2_04910at 5168.324 kb on - strand, within EFB2_04910at 5168.324 kb on - strand, within EFB2_04910at 5168.348 kb on - strand, within EFB2_04910at 5168.459 kb on + strand, within EFB2_04910at 5168.473 kb on + strand, within EFB2_04910at 5168.485 kb on + strand, within EFB2_04910

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
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5,165,832 + +1.4
5,165,832 + -0.1
5,165,843 + -0.4
5,165,843 + -1.9
5,165,886 + +0.0
5,165,886 + +0.9
5,165,886 + +0.8
5,165,896 + -0.7
5,165,918 + -0.1
5,165,927 + -0.9
5,165,941 + +1.5
5,165,941 + -0.1
5,165,941 + +2.4
5,165,941 + -0.3
5,166,310 + EFB2_04908 0.41 -1.3
5,166,310 + EFB2_04908 0.41 +0.3
5,166,477 + EFB2_04908 0.63 -0.7
5,166,660 + EFB2_04908 0.87 -0.1
5,166,660 + EFB2_04908 0.87 -1.4
5,166,664 + EFB2_04908 0.87 -1.1
5,166,739 + +0.9
5,166,739 + +1.9
5,166,754 + +0.5
5,167,496 + -1.0
5,167,501 - -1.9
5,167,546 + +2.0
5,167,645 + +0.6
5,167,732 + -2.4
5,167,733 - +0.9
5,167,744 - +0.5
5,167,744 - -0.2
5,167,770 - +0.7
5,167,771 + +1.1
5,167,821 - -0.9
5,167,821 - -1.2
5,167,910 + EFB2_04910 0.15 +1.0
5,167,910 + EFB2_04910 0.15 -1.9
5,167,911 - EFB2_04910 0.15 -0.7
5,167,911 - EFB2_04910 0.15 +0.6
5,167,911 - EFB2_04910 0.15 -0.8
5,167,935 + EFB2_04910 0.18 +1.7
5,167,935 + EFB2_04910 0.18 +0.0
5,167,935 + EFB2_04910 0.18 -0.3
5,167,981 + EFB2_04910 0.23 +1.3
5,167,981 + EFB2_04910 0.23 -0.3
5,167,982 - EFB2_04910 0.23 -0.5
5,167,982 - EFB2_04910 0.23 +1.0
5,167,982 - EFB2_04910 0.23 +0.1
5,167,988 + EFB2_04910 0.24 -0.8
5,167,988 + EFB2_04910 0.24 +0.0
5,167,988 + EFB2_04910 0.24 +0.0
5,167,988 + EFB2_04910 0.24 +1.9
5,167,988 + EFB2_04910 0.24 +0.2
5,167,988 + EFB2_04910 0.24 -1.7
5,167,988 + EFB2_04910 0.24 +0.4
5,167,988 + EFB2_04910 0.24 +0.4
5,167,988 + EFB2_04910 0.24 +2.9
5,167,988 + EFB2_04910 0.24 -0.8
5,167,989 - EFB2_04910 0.24 +2.3
5,167,989 - EFB2_04910 0.24 -0.1
5,167,989 - EFB2_04910 0.24 +0.5
5,167,989 - EFB2_04910 0.24 -0.1
5,167,989 - EFB2_04910 0.24 +0.1
5,167,989 - EFB2_04910 0.24 +0.2
5,167,989 - EFB2_04910 0.24 -0.2
5,167,989 - EFB2_04910 0.24 +0.9
5,167,989 - EFB2_04910 0.24 +1.3
5,167,989 - EFB2_04910 0.24 +0.2
5,167,989 - EFB2_04910 0.24 -0.1
5,167,989 - EFB2_04910 0.24 -0.1
5,167,989 - EFB2_04910 0.24 +1.1
5,167,989 - EFB2_04910 0.24 +1.1
5,167,989 - EFB2_04910 0.24 -1.7
5,168,021 + EFB2_04910 0.28 -0.1
5,168,021 + EFB2_04910 0.28 -2.3
5,168,021 + EFB2_04910 0.28 +0.1
5,168,021 + EFB2_04910 0.28 -0.6
5,168,022 - EFB2_04910 0.28 +0.8
5,168,022 - EFB2_04910 0.28 +1.2
5,168,022 - EFB2_04910 0.28 -0.4
5,168,022 - EFB2_04910 0.28 +1.0
5,168,022 - EFB2_04910 0.28 +0.5
5,168,022 - EFB2_04910 0.28 +0.2
5,168,022 - EFB2_04910 0.28 -1.0
5,168,022 - EFB2_04910 0.28 -0.3
5,168,022 - EFB2_04910 0.28 +0.1
5,168,022 - EFB2_04910 0.28 +0.7
5,168,022 - EFB2_04910 0.28 -1.3
5,168,024 + EFB2_04910 0.28 +0.2
5,168,024 + EFB2_04910 0.28 +1.2
5,168,024 + EFB2_04910 0.28 +0.8
5,168,024 + EFB2_04910 0.28 +0.6
5,168,024 + EFB2_04910 0.28 +0.1
5,168,024 + EFB2_04910 0.28 +0.3
5,168,024 + EFB2_04910 0.28 +0.2
5,168,024 + EFB2_04910 0.28 -0.5
5,168,024 + EFB2_04910 0.28 -0.6
5,168,024 + EFB2_04910 0.28 -0.4
5,168,025 - EFB2_04910 0.28 -0.3
5,168,025 - EFB2_04910 0.28 -0.2
5,168,025 - EFB2_04910 0.28 -1.0
5,168,025 - EFB2_04910 0.28 -0.5
5,168,025 - EFB2_04910 0.28 -0.5
5,168,025 - EFB2_04910 0.28 -0.3
5,168,025 - EFB2_04910 0.28 +0.4
5,168,025 - EFB2_04910 0.28 +0.8
5,168,066 + EFB2_04910 0.33 +1.5
5,168,066 + EFB2_04910 0.33 +1.5
5,168,066 + EFB2_04910 0.33 +0.5
5,168,066 + EFB2_04910 0.33 -2.3
5,168,066 + EFB2_04910 0.33 +0.8
5,168,066 + EFB2_04910 0.33 +1.3
5,168,066 + EFB2_04910 0.33 -0.1
5,168,066 + EFB2_04910 0.33 -3.8
5,168,067 - EFB2_04910 0.33 -1.0
5,168,067 - EFB2_04910 0.33 +1.6
5,168,067 - EFB2_04910 0.33 +1.2
5,168,067 - EFB2_04910 0.33 +1.4
5,168,067 - EFB2_04910 0.33 -0.5
5,168,067 - EFB2_04910 0.33 -0.3
5,168,067 - EFB2_04910 0.33 -2.6
5,168,067 - EFB2_04910 0.33 -2.9
5,168,070 + EFB2_04910 0.34 -0.6
5,168,070 + EFB2_04910 0.34 -0.3
5,168,070 + EFB2_04910 0.34 -0.3
5,168,070 + EFB2_04910 0.34 -0.2
5,168,070 + EFB2_04910 0.34 -0.2
5,168,070 + EFB2_04910 0.34 +1.4
5,168,070 + EFB2_04910 0.34 -0.4
5,168,070 + EFB2_04910 0.34 +0.5
5,168,070 + EFB2_04910 0.34 +1.1
5,168,070 + EFB2_04910 0.34 +0.3
5,168,070 + EFB2_04910 0.34 -0.1
5,168,070 + EFB2_04910 0.34 -0.7
5,168,070 + EFB2_04910 0.34 +0.4
5,168,070 + EFB2_04910 0.34 +1.4
5,168,070 + EFB2_04910 0.34 -3.3
5,168,070 + EFB2_04910 0.34 +0.5
5,168,070 + EFB2_04910 0.34 -2.8
5,168,070 + EFB2_04910 0.34 -0.6
5,168,070 + EFB2_04910 0.34 +1.2
5,168,071 - EFB2_04910 0.34 -0.1
5,168,071 - EFB2_04910 0.34 +0.9
5,168,071 - EFB2_04910 0.34 -0.2
5,168,071 - EFB2_04910 0.34 -0.4
5,168,071 - EFB2_04910 0.34 -0.9
5,168,071 - EFB2_04910 0.34 +0.2
5,168,071 - EFB2_04910 0.34 +0.3
5,168,071 - EFB2_04910 0.34 -1.4
5,168,071 - EFB2_04910 0.34 +0.7
5,168,071 - EFB2_04910 0.34 +0.5
5,168,071 - EFB2_04910 0.34 -1.6
5,168,071 - EFB2_04910 0.34 +0.1
5,168,071 - EFB2_04910 0.34 -0.4
5,168,071 - EFB2_04910 0.34 +0.1
5,168,071 - EFB2_04910 0.34 +0.9
5,168,071 - EFB2_04910 0.34 +0.7
5,168,071 - EFB2_04910 0.34 -1.0
5,168,071 - EFB2_04910 0.34 +1.8
5,168,071 - EFB2_04910 0.34 -0.1
5,168,071 - EFB2_04910 0.34 -0.7
5,168,071 - EFB2_04910 0.34 +0.8
5,168,071 - EFB2_04910 0.34 -1.5
5,168,071 - EFB2_04910 0.34 -0.8
5,168,072 + EFB2_04910 0.34 -0.3
5,168,072 + EFB2_04910 0.34 +0.3
5,168,073 - EFB2_04910 0.34 -0.2
5,168,073 - EFB2_04910 0.34 +0.5
5,168,073 - EFB2_04910 0.34 -0.2
5,168,073 - EFB2_04910 0.34 -1.8
5,168,081 - EFB2_04910 0.35 -1.1
5,168,105 + EFB2_04910 0.38 +0.0
5,168,105 + EFB2_04910 0.38 +1.2
5,168,128 + EFB2_04910 0.41 -0.4
5,168,129 - EFB2_04910 0.41 +0.1
5,168,129 - EFB2_04910 0.41 -0.5
5,168,185 + EFB2_04910 0.47 +0.1
5,168,185 + EFB2_04910 0.47 -1.1
5,168,186 - EFB2_04910 0.48 -0.9
5,168,208 - EFB2_04910 0.50 +1.3
5,168,233 + EFB2_04910 0.53 +1.0
5,168,255 + EFB2_04910 0.56 -1.8
5,168,256 - EFB2_04910 0.56 +0.5
5,168,295 - EFB2_04910 0.61 -2.6
5,168,323 + EFB2_04910 0.64 +1.3
5,168,324 - EFB2_04910 0.64 -3.7
5,168,324 - EFB2_04910 0.64 +0.4
5,168,324 - EFB2_04910 0.64 -1.3
5,168,324 - EFB2_04910 0.64 +1.2
5,168,348 - EFB2_04910 0.67 -0.9
5,168,459 + EFB2_04910 0.80 +0.6
5,168,473 + EFB2_04910 0.82 -0.1
5,168,485 + EFB2_04910 0.83 +1.8

Or see this region's nucleotide sequence