Strain Fitness in Escherichia fergusonii Becca around EFB2_04128

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,336,286	-		EFB2_04127	0.65	-0.5
4,336,286	-		EFB2_04127	0.65	+0.1
4,336,342	+		EFB2_04127	0.67	-1.9
4,336,342	+		EFB2_04127	0.67	-1.2
4,336,342	+		EFB2_04127	0.67	+0.6
4,336,342	+		EFB2_04127	0.67	-0.1
4,336,342	+		EFB2_04127	0.67	-0.1
4,336,342	+		EFB2_04127	0.67	+1.1
4,336,343	-		EFB2_04127	0.67	+1.3
4,336,343	-		EFB2_04127	0.67	-0.1
4,336,343	-		EFB2_04127	0.67	+0.8
4,336,343	-		EFB2_04127	0.67	+0.4
4,336,343	-		EFB2_04127	0.67	+0.3
4,336,343	-		EFB2_04127	0.67	+1.3
4,336,343	-		EFB2_04127	0.67	-0.3
4,336,343	-		EFB2_04127	0.67	-1.3
4,336,379	-		EFB2_04127	0.69	-1.8
4,336,381	+		EFB2_04127	0.69	+0.5
4,336,382	-		EFB2_04127	0.69	+0.3
4,336,382	-		EFB2_04127	0.69	-0.7
4,336,405	+		EFB2_04127	0.70	-0.3
4,336,405	+		EFB2_04127	0.70	-0.2
4,336,405	+		EFB2_04127	0.70	-0.2
4,336,405	+		EFB2_04127	0.70	-1.5
4,336,405	+		EFB2_04127	0.70	-0.3
4,336,406	-		EFB2_04127	0.70	+0.4
4,336,406	-		EFB2_04127	0.70	+1.0
4,336,407	+		EFB2_04127	0.70	-0.0
4,336,407	+		EFB2_04127	0.70	-3.7
4,336,408	-		EFB2_04127	0.70	-0.9
4,336,408	-		EFB2_04127	0.70	+0.1
4,336,408	-		EFB2_04127	0.70	+0.6
4,336,471	+		EFB2_04127	0.72	+1.3
4,336,472	-		EFB2_04127	0.72	+0.3
4,336,472	-		EFB2_04127	0.72	-0.7
4,336,472	-		EFB2_04127	0.72	-0.7
4,336,484	-		EFB2_04127	0.73	+0.6
4,336,510	+		EFB2_04127	0.74	+1.2
4,336,510	+		EFB2_04127	0.74	+0.0
4,336,516	+		EFB2_04127	0.74	-0.2
4,336,517	-		EFB2_04127	0.74	+0.7
4,336,518	+		EFB2_04127	0.74	+0.8
4,336,518	+		EFB2_04127	0.74	-1.6
4,336,519	-		EFB2_04127	0.74	-0.2
4,336,519	-		EFB2_04127	0.74	+1.0
4,336,559	-		EFB2_04127	0.75	+0.0
4,336,581	-		EFB2_04127	0.76	+0.1
4,336,581	-		EFB2_04127	0.76	-0.2
4,336,584	+		EFB2_04127	0.76	+0.2
4,336,591	-		EFB2_04127	0.77	+1.0
4,336,619	+		EFB2_04127	0.78	+0.2
4,336,620	-		EFB2_04127	0.78	-3.0
4,336,660	+		EFB2_04127	0.79	+3.0
4,336,660	+		EFB2_04127	0.79	-2.8
4,336,690	+		EFB2_04127	0.80	-0.2
4,336,690	+		EFB2_04127	0.80	-1.9
4,336,691	-		EFB2_04127	0.80	-1.2
4,336,691	-		EFB2_04127	0.80	+0.9
4,336,691	-		EFB2_04127	0.80	+1.2
4,336,691	-		EFB2_04127	0.80	+2.6
4,336,691	-		EFB2_04127	0.80	-0.5
4,336,691	-		EFB2_04127	0.80	-0.4
4,336,692	+		EFB2_04127	0.80	+1.2
4,336,692	+		EFB2_04127	0.80	-2.2
4,336,692	+		EFB2_04127	0.80	+0.3
4,336,708	+		EFB2_04127	0.81	+0.3
4,336,714	+		EFB2_04127	0.81	+2.7
4,336,714	+		EFB2_04127	0.81	-1.5
4,336,714	+		EFB2_04127	0.81	-0.5
4,336,714	+		EFB2_04127	0.81	-0.9
4,336,714	+		EFB2_04127	0.81	+0.0
4,336,714	+		EFB2_04127	0.81	+0.2
4,336,714	+		EFB2_04127	0.81	+0.6
4,336,715	-		EFB2_04127	0.81	-0.3
4,336,715	-		EFB2_04127	0.81	+0.2
4,336,715	-		EFB2_04127	0.81	+0.8
4,336,771	+		EFB2_04127	0.83	+1.2
4,336,772	-		EFB2_04127	0.84	+0.2
4,336,772	-		EFB2_04127	0.84	-0.1
4,336,772	-		EFB2_04127	0.84	-0.6
4,336,794	-		EFB2_04127	0.84	-0.5
4,336,828	+		EFB2_04127	0.86	-0.9
4,336,829	-		EFB2_04127	0.86	+1.4
4,336,846	+		EFB2_04127	0.86	+0.8
4,336,847	-		EFB2_04127	0.86	-0.2
4,336,858	+		EFB2_04127	0.87	+0.4
4,336,859	-		EFB2_04127	0.87	-1.9
4,336,918	+		EFB2_04127	0.89	-1.1
4,336,919	-		EFB2_04127	0.89	-1.0
4,336,919	-		EFB2_04127	0.89	-0.1
4,336,942	+		EFB2_04127	0.90	+1.3
4,336,944	+				-0.4
4,336,944	+				-2.0
4,336,959	+				-1.1
4,336,959	+				-1.0
4,336,960	-				-0.8
4,336,963	+				-0.6
4,336,964	-				-1.8
4,337,064	+				-0.5
4,337,149	+				+1.1
4,337,149	+				-1.0
4,337,150	-				+0.9
4,337,150	-				+1.2
4,337,150	-				-0.7
4,337,150	-				-1.0
4,337,181	+				-0.3
4,337,200	-				+0.9
4,337,207	+				-0.3
4,337,207	+				-0.2
4,337,207	+				-1.5
4,337,208	-				-0.1
4,337,208	-				-1.0
4,337,247	-				-0.1
4,337,320	+				+1.3
4,337,330	+				-0.5
4,337,334	+				-0.1
4,337,335	-				-0.0
4,337,335	-				-0.0
4,337,335	-				-0.5
4,337,337	+				+1.3
4,337,338	-				+0.9
4,337,364	+		EFB2_04128	0.13	+1.4
4,337,435	-		EFB2_04128	0.22	+0.1
4,337,444	+		EFB2_04128	0.24	+1.4
4,337,444	+		EFB2_04128	0.24	+0.3
4,337,445	-		EFB2_04128	0.24	-0.4
4,337,445	-		EFB2_04128	0.24	+0.1
4,337,445	-		EFB2_04128	0.24	+0.8
4,337,445	-		EFB2_04128	0.24	-0.7
4,337,447	+		EFB2_04128	0.24	+0.2
4,337,447	+		EFB2_04128	0.24	-0.1
4,337,447	+		EFB2_04128	0.24	-0.2
4,337,447	+		EFB2_04128	0.24	+0.4
4,337,447	+		EFB2_04128	0.24	+1.1
4,337,448	-		EFB2_04128	0.24	-0.5
4,337,448	-		EFB2_04128	0.24	-0.2
4,337,448	-		EFB2_04128	0.24	-0.5
4,337,448	-		EFB2_04128	0.24	-0.2
4,337,530	+		EFB2_04128	0.36	+0.8
4,337,530	+		EFB2_04128	0.36	+1.7
4,337,546	+		EFB2_04128	0.38	-2.3
4,337,546	+		EFB2_04128	0.38	-1.1
4,337,546	+		EFB2_04128	0.38	-0.0
4,337,547	-		EFB2_04128	0.38	+0.2
4,337,547	-		EFB2_04128	0.38	-0.2
4,337,549	+		EFB2_04128	0.38	+1.4
4,337,556	+		EFB2_04128	0.39	+1.6
4,337,587	-		EFB2_04128	0.43	-0.4
4,337,644	+		EFB2_04128	0.51	-1.7
4,337,645	-		EFB2_04128	0.51	-0.7
4,337,645	-		EFB2_04128	0.51	-1.7
4,337,700	+		EFB2_04128	0.59	+0.3
4,337,798	+		EFB2_04128	0.72	+2.3
4,337,798	+		EFB2_04128	0.72	+0.9
4,337,798	+		EFB2_04128	0.72	-2.5
4,337,799	-		EFB2_04128	0.73	-0.3
4,337,799	-		EFB2_04128	0.73	-0.2
4,337,799	-		EFB2_04128	0.73	+0.2
4,337,805	+		EFB2_04128	0.73	+1.1
4,337,817	+		EFB2_04128	0.75	+0.2
4,337,878	+		EFB2_04128	0.83	+2.7
4,337,878	+		EFB2_04128	0.83	-1.2
4,337,878	+		EFB2_04128	0.83	-0.4
4,337,879	-		EFB2_04128	0.84	-2.0
4,337,879	-		EFB2_04128	0.84	+0.1
4,337,879	-		EFB2_04128	0.84	-0.9
4,337,879	-		EFB2_04128	0.84	-0.9
4,337,879	-		EFB2_04128	0.84	-0.7
4,337,934	+				+0.5
4,337,935	-				+0.2
4,337,956	+				+0.9
4,337,956	+				+0.8
4,337,957	-				+0.1
4,337,974	+				+0.9
4,337,975	-				+0.6
4,337,975	-				+0.1
4,337,992	-				+2.8
4,337,992	-				-3.0
4,338,020	+				-0.0
4,338,020	+				-1.1
4,338,020	+				-0.3
4,338,020	+				-0.3
4,338,021	-				-0.4
4,338,021	-				-2.2
4,338,035	+				+0.1
4,338,035	+				+0.1
4,338,035	+				-1.7
4,338,035	+				-1.3
4,338,036	-				+0.1
4,338,036	-				-1.6
4,338,041	+				-0.8
4,338,041	+				-0.5
4,338,041	+				-0.1
4,338,041	+				-0.7
4,338,041	+				+0.1
4,338,041	+				-1.9
4,338,042	-				+0.1
4,338,042	-				+0.6
4,338,042	-				-1.9
4,338,042	-				+0.1
4,338,042	-				-0.4
4,338,084	+		EFB2_04129	0.10	+1.0
4,338,099	+		EFB2_04129	0.13	-3.6
4,338,108	-		EFB2_04129	0.15	+0.7
4,338,108	-		EFB2_04129	0.15	+2.1
4,338,124	+		EFB2_04129	0.18	+0.6
4,338,125	-		EFB2_04129	0.18	+0.1
4,338,132	+		EFB2_04129	0.20	+0.2
4,338,132	+		EFB2_04129	0.20	-0.0
4,338,132	+		EFB2_04129	0.20	-0.2
4,338,132	+		EFB2_04129	0.20	+0.2
4,338,133	-		EFB2_04129	0.20	-1.0
4,338,133	-		EFB2_04129	0.20	+0.2
4,338,133	-		EFB2_04129	0.20	-0.2
4,338,133	-		EFB2_04129	0.20	+0.5
4,338,133	-		EFB2_04129	0.20	+1.0
4,338,175	-		EFB2_04129	0.28	+1.2
4,338,211	+		EFB2_04129	0.36	+1.5
4,338,212	-		EFB2_04129	0.36	-1.3
4,338,212	-		EFB2_04129	0.36	-1.6
4,338,219	+		EFB2_04129	0.37	+1.6
4,338,220	-		EFB2_04129	0.37	+0.8
4,338,220	-		EFB2_04129	0.37	+0.5
4,338,271	-		EFB2_04129	0.48	-1.8
4,338,324	+		EFB2_04129	0.58	-0.5
4,338,324	+		EFB2_04129	0.58	+1.4
4,338,324	+		EFB2_04129	0.58	-0.9
4,338,324	+		EFB2_04129	0.58	+0.3
4,338,324	+		EFB2_04129	0.58	+0.3
4,338,324	+		EFB2_04129	0.58	+0.6
4,338,324	+		EFB2_04129	0.58	+1.0
4,338,325	-		EFB2_04129	0.58	-0.4
4,338,325	-		EFB2_04129	0.58	-0.2
4,338,325	-		EFB2_04129	0.58	+3.2
4,338,325	-		EFB2_04129	0.58	+0.5
4,338,325	-		EFB2_04129	0.58	+0.7
4,338,325	-		EFB2_04129	0.58	-0.9
4,338,325	-		EFB2_04129	0.58	+0.3
4,338,325	-		EFB2_04129	0.58	+0.2
4,338,325	-		EFB2_04129	0.58	-0.7
4,338,325	-		EFB2_04129	0.58	+1.2
4,338,325	-		EFB2_04129	0.58	+0.3
4,338,335	-		EFB2_04129	0.60	+1.8
4,338,335	-		EFB2_04129	0.60	+1.3
4,338,342	+		EFB2_04129	0.62	+0.2
4,338,343	-		EFB2_04129	0.62	+0.7
4,338,363	+		EFB2_04129	0.66	+0.5
4,338,363	+		EFB2_04129	0.66	+0.1
4,338,363	+		EFB2_04129	0.66	-0.4
4,338,363	+		EFB2_04129	0.66	-0.3
4,338,363	+		EFB2_04129	0.66	-0.5
4,338,363	+		EFB2_04129	0.66	-2.6
4,338,363	+		EFB2_04129	0.66	+0.0
4,338,363	+		EFB2_04129	0.66	-0.9
4,338,364	-		EFB2_04129	0.66	+0.9
4,338,364	-		EFB2_04129	0.66	+0.2
4,338,364	-		EFB2_04129	0.66	-3.6
4,338,364	-		EFB2_04129	0.66	+0.8
4,338,364	-		EFB2_04129	0.66	-0.9
4,338,364	-		EFB2_04129	0.66	-0.0
4,338,364	-		EFB2_04129	0.66	+0.5
4,338,364	-		EFB2_04129	0.66	+0.8
4,338,364	-		EFB2_04129	0.66	+0.5
4,338,364	-		EFB2_04129	0.66	-0.1
4,338,364	-		EFB2_04129	0.66	+0.4
4,338,390	+		EFB2_04129	0.71	-0.5
4,338,459	+		EFB2_04129	0.85	+0.9
4,338,480	+		EFB2_04129	0.90	-0.1
4,338,480	+		EFB2_04129	0.90	-0.7
4,338,481	-		EFB2_04129	0.90	-0.2
4,338,481	-		EFB2_04129	0.90	-0.3
4,338,501	+				+1.1
4,338,501	+				+1.0
4,338,502	-				+0.8
4,338,502	-				-2.0
4,338,502	-				+0.7
4,338,502	-				-1.1
4,338,510	+				+0.7
4,338,511	-				-0.7
4,338,547	+				-0.2
4,338,548	-				-0.8
4,338,556	+				-0.4
4,338,556	+				+0.4
4,338,556	+				+0.0
4,338,556	+				+0.2
4,338,557	-				-3.6
4,338,557	-				+0.9
4,338,578	-				-0.1
4,338,634	+				+1.0
4,338,634	+				+0.4
4,338,639	+				+1.1
4,338,645	+				+0.1
4,338,645	+				+0.4
4,338,646	-				+0.2
4,338,674	-				-2.2
4,338,733	+		EFB2_04130	0.17	-0.5
4,338,733	+		EFB2_04130	0.17	+1.1
4,338,733	+		EFB2_04130	0.17	-3.0
4,338,733	+		EFB2_04130	0.17	-0.4
4,338,733	+		EFB2_04130	0.17	-0.5
4,338,733	+		EFB2_04130	0.17	+0.6
4,338,733	+		EFB2_04130	0.17	+0.6
4,338,733	+		EFB2_04130	0.17	+0.1
4,338,733	+		EFB2_04130	0.17	+1.4
4,338,734	-		EFB2_04130	0.17	+0.3
4,338,734	-		EFB2_04130	0.17	+0.3
4,338,734	-		EFB2_04130	0.17	-1.0
4,338,734	-		EFB2_04130	0.17	+0.4
4,338,734	-		EFB2_04130	0.17	-1.3
4,338,734	-		EFB2_04130	0.17	+0.8
4,338,734	-		EFB2_04130	0.17	+0.1
4,338,734	-		EFB2_04130	0.17	-0.9
4,338,734	-		EFB2_04130	0.17	+0.6
4,338,736	+		EFB2_04130	0.18	-0.2
4,338,736	+		EFB2_04130	0.18	-3.6
4,338,736	+		EFB2_04130	0.18	+1.3
4,338,737	-		EFB2_04130	0.18	-0.5
4,338,737	-		EFB2_04130	0.18	-0.7
4,338,737	-		EFB2_04130	0.18	-0.3
4,338,763	+		EFB2_04130	0.23	+0.3
4,338,763	+		EFB2_04130	0.23	+1.0
4,338,763	+		EFB2_04130	0.23	+0.3
4,338,763	+		EFB2_04130	0.23	-0.2
4,338,763	+		EFB2_04130	0.23	-0.0
4,338,764	-		EFB2_04130	0.23	-0.0
4,338,764	-		EFB2_04130	0.23	+0.3
4,338,764	-		EFB2_04130	0.23	+1.7
4,338,764	-		EFB2_04130	0.23	+0.4
4,338,871	+		EFB2_04130	0.42	+2.8
4,338,871	+		EFB2_04130	0.42	-0.1
4,338,871	+		EFB2_04130	0.42	+0.2
4,338,871	+		EFB2_04130	0.42	+3.1
4,338,872	-		EFB2_04130	0.43	-0.1
4,338,872	-		EFB2_04130	0.43	+0.8
4,338,872	-		EFB2_04130	0.43	-0.4
4,338,892	+		EFB2_04130	0.46	+0.0
4,338,893	-		EFB2_04130	0.46	+0.6
4,338,893	-		EFB2_04130	0.46	+1.6
4,338,896	+		EFB2_04130	0.47	-1.9
4,338,896	+		EFB2_04130	0.47	-0.3
4,338,896	+		EFB2_04130	0.47	+1.8
4,338,896	+		EFB2_04130	0.47	+0.7
4,338,897	-		EFB2_04130	0.47	+0.8
4,338,897	-		EFB2_04130	0.47	+0.6
4,338,916	+		EFB2_04130	0.51	+0.4
4,338,916	+		EFB2_04130	0.51	-1.3
4,338,916	+		EFB2_04130	0.51	-0.5
4,338,916	+		EFB2_04130	0.51	+0.0
4,338,916	+		EFB2_04130	0.51	-0.1
4,338,917	-		EFB2_04130	0.51	-1.6
4,338,917	-		EFB2_04130	0.51	-3.2
4,338,917	-		EFB2_04130	0.51	+0.3
4,338,917	-		EFB2_04130	0.51	-2.4
4,338,917	-		EFB2_04130	0.51	+0.7
4,338,917	-		EFB2_04130	0.51	-0.4
4,338,955	+		EFB2_04130	0.58	-0.4
4,338,955	+		EFB2_04130	0.58	-0.9
4,338,956	-		EFB2_04130	0.58	+1.7