Strain Fitness in Escherichia fergusonii Becca around EFB2_03579

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,737,867	+		EFB2_03578	0.53	-1.5
3,737,867	+		EFB2_03578	0.53	+0.9
3,737,867	+		EFB2_03578	0.53	-1.6
3,737,867	+		EFB2_03578	0.53	-0.1
3,737,868	-		EFB2_03578	0.53	+0.9
3,737,868	-		EFB2_03578	0.53	-0.4
3,737,958	-		EFB2_03578	0.59	+2.8
3,737,958	-		EFB2_03578	0.59	+0.7
3,737,980	+		EFB2_03578	0.60	+0.0
3,737,990	+		EFB2_03578	0.61	+0.0
3,737,991	-		EFB2_03578	0.61	-0.4
3,738,008	+		EFB2_03578	0.62	-1.7
3,738,008	+		EFB2_03578	0.62	-1.1
3,738,009	-		EFB2_03578	0.62	+0.1
3,738,009	-		EFB2_03578	0.62	+0.6
3,738,009	-		EFB2_03578	0.62	+1.5
3,738,009	-		EFB2_03578	0.62	-2.2
3,738,009	-		EFB2_03578	0.62	+0.0
3,738,009	-		EFB2_03578	0.62	+0.2
3,738,071	+		EFB2_03578	0.65	+0.5
3,738,072	-		EFB2_03578	0.66	-0.2
3,738,094	+		EFB2_03578	0.67	+0.3
3,738,094	+		EFB2_03578	0.67	-1.7
3,738,168	-		EFB2_03578	0.71	-0.7
3,738,185	+		EFB2_03578	0.72	+1.2
3,738,186	-		EFB2_03578	0.72	+0.4
3,738,204	-		EFB2_03578	0.74	+0.7
3,738,214	+		EFB2_03578	0.74	-0.2
3,738,214	+		EFB2_03578	0.74	+1.3
3,738,215	-		EFB2_03578	0.74	+1.2
3,738,215	-		EFB2_03578	0.74	+0.2
3,738,215	-		EFB2_03578	0.74	-0.9
3,738,215	-		EFB2_03578	0.74	+1.9
3,738,218	+		EFB2_03578	0.74	+0.4
3,738,218	+		EFB2_03578	0.74	+0.7
3,738,218	+		EFB2_03578	0.74	+1.3
3,738,218	+		EFB2_03578	0.74	+1.1
3,738,218	+		EFB2_03578	0.74	-3.3
3,738,219	-		EFB2_03578	0.74	+0.3
3,738,219	-		EFB2_03578	0.74	+1.1
3,738,219	-		EFB2_03578	0.74	+0.4
3,738,219	-		EFB2_03578	0.74	-2.4
3,738,219	-		EFB2_03578	0.74	-2.3
3,738,219	-		EFB2_03578	0.74	-2.5
3,738,219	-		EFB2_03578	0.74	+0.5
3,738,219	-		EFB2_03578	0.74	-1.6
3,738,219	-		EFB2_03578	0.74	-1.4
3,738,219	-		EFB2_03578	0.74	+0.7
3,738,219	-		EFB2_03578	0.74	+0.2
3,738,219	-		EFB2_03578	0.74	+1.1
3,738,219	-		EFB2_03578	0.74	+0.8
3,738,242	+		EFB2_03578	0.76	+0.4
3,738,242	+		EFB2_03578	0.76	-0.6
3,738,264	+		EFB2_03578	0.77	+0.9
3,738,264	+		EFB2_03578	0.77	-1.7
3,738,264	+		EFB2_03578	0.77	-0.1
3,738,265	-		EFB2_03578	0.77	-0.2
3,738,265	-		EFB2_03578	0.77	+0.7
3,738,267	+		EFB2_03578	0.77	-0.2
3,738,268	-		EFB2_03578	0.77	+1.1
3,738,268	-		EFB2_03578	0.77	-3.7
3,738,296	+		EFB2_03578	0.79	+1.4
3,738,297	-		EFB2_03578	0.79	-0.2
3,738,297	-		EFB2_03578	0.79	+1.0
3,738,297	-		EFB2_03578	0.79	-0.7
3,738,316	+		EFB2_03578	0.80	+0.0
3,738,316	+		EFB2_03578	0.80	-1.3
3,738,316	+		EFB2_03578	0.80	-0.4
3,738,317	-		EFB2_03578	0.80	+0.2
3,738,332	+		EFB2_03578	0.81	-0.0
3,738,360	+		EFB2_03578	0.83	+1.0
3,738,360	+		EFB2_03578	0.83	+0.4
3,738,360	+		EFB2_03578	0.83	-0.5
3,738,360	+		EFB2_03578	0.83	-0.8
3,738,361	-		EFB2_03578	0.83	-0.9
3,738,361	-		EFB2_03578	0.83	-1.6
3,738,361	-		EFB2_03578	0.83	-2.0
3,738,361	-		EFB2_03578	0.83	-1.8
3,738,386	+		EFB2_03578	0.85	-2.0
3,738,386	+		EFB2_03578	0.85	+0.5
3,738,386	+		EFB2_03578	0.85	+0.4
3,738,386	+		EFB2_03578	0.85	-1.1
3,738,386	+		EFB2_03578	0.85	-1.1
3,738,387	-		EFB2_03578	0.85	-1.6
3,738,387	-		EFB2_03578	0.85	+0.6
3,738,387	-		EFB2_03578	0.85	-1.8
3,738,387	-		EFB2_03578	0.85	-1.6
3,738,387	-		EFB2_03578	0.85	-0.1
3,738,405	+		EFB2_03578	0.86	-1.1
3,738,405	+		EFB2_03578	0.86	-1.4
3,738,405	+		EFB2_03578	0.86	+1.1
3,738,406	-		EFB2_03578	0.86	+0.5
3,738,406	-		EFB2_03578	0.86	-0.2
3,738,406	-		EFB2_03578	0.86	+0.2
3,738,481	+				-0.2
3,738,481	+				+0.3
3,738,481	+				-1.1
3,738,482	-				-0.3
3,738,482	-				+0.5
3,738,491	-				+0.9
3,738,527	+				-0.3
3,738,527	+				+0.1
3,738,540	-				+0.1
3,738,540	-				+0.1
3,738,547	+				+0.1
3,738,548	-				-0.0
3,738,554	+				+0.8
3,738,565	+				-0.9
3,738,593	+				-1.0
3,738,593	+				+0.3
3,738,593	+				+1.2
3,738,593	+				+0.4
3,738,593	+				-2.0
3,738,593	+				-2.5
3,738,593	+				+2.5
3,738,593	+				+0.5
3,738,593	+				-2.6
3,738,594	-				+0.4
3,738,594	-				-3.0
3,738,594	-				-0.2
3,738,594	-				+0.7
3,738,594	-				-1.4
3,738,594	-				-3.1
3,738,594	-				-1.0
3,738,630	+				-0.9
3,738,633	+				-0.5
3,738,633	+				+0.6
3,738,633	+				-0.9
3,738,641	+				-0.1
3,738,641	+				-0.8
3,738,642	-				+0.3
3,738,642	-				+1.6
3,738,642	-				-2.1
3,738,679	+				+0.1
3,738,679	+				-1.3
3,738,679	+				+0.1
3,738,680	-				+0.0
3,738,680	-				-1.3
3,738,682	+				+0.0
3,738,682	+				-2.3
3,738,682	+				-0.2
3,738,683	-				-1.3
3,738,683	-				-2.9
3,738,683	-				+1.7
3,738,697	+				+1.1
3,738,697	+				-2.1
3,738,697	+				-1.4
3,738,697	+				+0.7
3,738,697	+				+0.0
3,738,697	+				+0.8
3,738,697	+				+1.1
3,738,697	+				+1.5
3,738,697	+				-0.4
3,738,697	+				-3.4
3,738,697	+				-1.4
3,738,698	-				+0.6
3,738,698	-				+0.5
3,738,698	-				+0.4
3,738,698	-				-2.4
3,738,698	-				+0.6
3,738,698	-				+0.2
3,738,698	-				+1.1
3,738,698	-				-1.4
3,738,698	-				+0.5
3,738,698	-				-0.0
3,738,722	+				-0.2
3,738,723	-				+1.2
3,738,723	-				-0.9
3,738,750	+				-2.3
3,738,783	+				-0.9
3,738,783	+				+0.2
3,738,784	-				-0.5
3,738,789	+				-0.6
3,738,789	+				+0.7
3,738,789	+				-2.9
3,738,789	+				-1.6
3,738,789	+				+0.0
3,738,789	+				+1.2
3,738,789	+				+0.1
3,738,789	+				-0.1
3,738,789	+				-1.0
3,738,790	-				+1.3
3,738,790	-				+0.3
3,738,790	-				-0.1
3,738,790	-				-0.2
3,738,790	-				-0.3
3,738,805	+				-2.7
3,738,815	+				+0.4
3,738,815	+				-0.1
3,738,815	+				-1.4
3,738,815	+				+0.9
3,738,815	+				+0.6
3,738,815	+				+0.6
3,738,815	+				-1.9
3,738,816	-				-2.6
3,738,816	-				-0.4
3,738,816	-				+2.0
3,738,816	-				+0.1
3,738,828	+				-1.6
3,738,828	+				+2.1
3,738,828	+				-1.3
3,738,828	+				+1.4
3,738,829	-				+0.1
3,738,829	-				-0.2
3,738,829	-				-0.7
3,738,912	+				-2.0
3,738,912	+				+0.1
3,738,912	+				+1.2
3,738,933	+				-1.2
3,738,934	-				+0.8
3,738,934	-				+0.4
3,738,934	-				-1.5
3,738,938	+				-2.2
3,738,938	+				+0.2
3,738,938	+				+1.2
3,738,945	+				+1.2
3,738,945	+				+2.7
3,738,946	-				-0.5
3,738,946	-				-2.4
3,738,946	-				+0.1
3,738,946	-				+0.4
3,739,000	+		EFB2_03579	0.12	-1.0
3,739,000	+		EFB2_03579	0.12	-1.5
3,739,001	-		EFB2_03579	0.12	+0.5
3,739,035	+		EFB2_03579	0.14	+0.9
3,739,035	+		EFB2_03579	0.14	-1.0
3,739,035	+		EFB2_03579	0.14	-1.3
3,739,035	+		EFB2_03579	0.14	-0.4
3,739,036	-		EFB2_03579	0.14	-0.0
3,739,036	-		EFB2_03579	0.14	-1.9
3,739,036	-		EFB2_03579	0.14	-1.8
3,739,036	-		EFB2_03579	0.14	+1.6
3,739,036	-		EFB2_03579	0.14	-0.4
3,739,052	+		EFB2_03579	0.16	-2.5
3,739,052	+		EFB2_03579	0.16	-0.8
3,739,053	-		EFB2_03579	0.16	-2.2
3,739,082	+		EFB2_03579	0.18	+0.2
3,739,117	+		EFB2_03579	0.21	-0.2
3,739,118	-		EFB2_03579	0.21	-1.5
3,739,155	+		EFB2_03579	0.24	+0.4
3,739,156	-		EFB2_03579	0.24	+0.5
3,739,156	-		EFB2_03579	0.24	-0.7
3,739,160	+		EFB2_03579	0.25	+1.8
3,739,160	+		EFB2_03579	0.25	-0.4
3,739,160	+		EFB2_03579	0.25	+0.7
3,739,160	+		EFB2_03579	0.25	+0.2
3,739,160	+		EFB2_03579	0.25	+0.2
3,739,160	+		EFB2_03579	0.25	-1.6
3,739,160	+		EFB2_03579	0.25	-1.7
3,739,160	+		EFB2_03579	0.25	+1.6
3,739,160	+		EFB2_03579	0.25	-1.9
3,739,161	-		EFB2_03579	0.25	+0.1
3,739,161	-		EFB2_03579	0.25	-1.0
3,739,161	-		EFB2_03579	0.25	-1.4
3,739,161	-		EFB2_03579	0.25	-0.5
3,739,161	-		EFB2_03579	0.25	+0.1
3,739,161	-		EFB2_03579	0.25	+1.0
3,739,161	-		EFB2_03579	0.25	+0.3
3,739,161	-		EFB2_03579	0.25	-1.0
3,739,161	-		EFB2_03579	0.25	+1.0
3,739,161	-		EFB2_03579	0.25	+0.1
3,739,161	-		EFB2_03579	0.25	-0.6
3,739,161	-		EFB2_03579	0.25	-2.4
3,739,311	+		EFB2_03579	0.37	+0.7
3,739,311	+		EFB2_03579	0.37	+0.7
3,739,311	+		EFB2_03579	0.37	+0.1
3,739,312	-		EFB2_03579	0.37	+1.0
3,739,312	-		EFB2_03579	0.37	+1.4
3,739,312	-		EFB2_03579	0.37	+0.0
3,739,312	-		EFB2_03579	0.37	-1.9
3,739,312	-		EFB2_03579	0.37	+0.5
3,739,312	-		EFB2_03579	0.37	-1.2
3,739,459	+		EFB2_03579	0.49	-3.2
3,739,459	+		EFB2_03579	0.49	+0.4
3,739,460	-		EFB2_03579	0.49	-1.1
3,739,483	-		EFB2_03579	0.51	-1.2
3,739,483	-		EFB2_03579	0.51	-0.4
3,739,507	-		EFB2_03579	0.53	-1.0
3,739,528	-		EFB2_03579	0.55	+1.2
3,739,556	+		EFB2_03579	0.57	-0.9
3,739,557	-		EFB2_03579	0.57	+0.0
3,739,577	-		EFB2_03579	0.59	+0.7
3,739,582	+		EFB2_03579	0.59	+0.5
3,739,582	+		EFB2_03579	0.59	-0.8
3,739,582	+		EFB2_03579	0.59	-0.4
3,739,582	+		EFB2_03579	0.59	-2.7
3,739,583	-		EFB2_03579	0.59	-1.9
3,739,583	-		EFB2_03579	0.59	-1.5
3,739,583	-		EFB2_03579	0.59	-2.4
3,739,583	-		EFB2_03579	0.59	-1.2
3,739,584	+		EFB2_03579	0.59	-2.2
3,739,584	+		EFB2_03579	0.59	+0.6
3,739,584	+		EFB2_03579	0.59	+0.3
3,739,603	+		EFB2_03579	0.61	+0.3
3,739,603	+		EFB2_03579	0.61	-0.3
3,739,603	+		EFB2_03579	0.61	-0.7
3,739,603	+		EFB2_03579	0.61	-0.2
3,739,603	+		EFB2_03579	0.61	-0.8
3,739,603	+		EFB2_03579	0.61	+1.7
3,739,603	+		EFB2_03579	0.61	+1.0
3,739,603	+		EFB2_03579	0.61	+0.7
3,739,603	+		EFB2_03579	0.61	-0.5
3,739,604	-		EFB2_03579	0.61	-0.9
3,739,604	-		EFB2_03579	0.61	-0.5
3,739,604	-		EFB2_03579	0.61	-0.6
3,739,604	-		EFB2_03579	0.61	-0.9
3,739,604	-		EFB2_03579	0.61	-1.2
3,739,604	-		EFB2_03579	0.61	+0.6
3,739,604	-		EFB2_03579	0.61	-0.2
3,739,604	-		EFB2_03579	0.61	+2.4
3,739,604	-		EFB2_03579	0.61	+0.4
3,739,604	-		EFB2_03579	0.61	+0.5
3,739,604	-		EFB2_03579	0.61	-3.3
3,739,604	-		EFB2_03579	0.61	-0.4
3,739,604	-		EFB2_03579	0.61	-1.6
3,739,606	+		EFB2_03579	0.61	+1.1
3,739,606	+		EFB2_03579	0.61	-0.5
3,739,606	+		EFB2_03579	0.61	+0.6
3,739,606	+		EFB2_03579	0.61	+2.3
3,739,606	+		EFB2_03579	0.61	-2.0
3,739,606	+		EFB2_03579	0.61	+0.6
3,739,606	+		EFB2_03579	0.61	-0.3
3,739,607	-		EFB2_03579	0.61	-0.5
3,739,607	-		EFB2_03579	0.61	+0.9
3,739,607	-		EFB2_03579	0.61	+0.8
3,739,607	-		EFB2_03579	0.61	+1.0
3,739,607	-		EFB2_03579	0.61	+0.7
3,739,607	-		EFB2_03579	0.61	-2.3
3,739,607	-		EFB2_03579	0.61	-0.2
3,739,607	-		EFB2_03579	0.61	-0.2
3,739,607	-		EFB2_03579	0.61	-1.2
3,739,607	-		EFB2_03579	0.61	+0.2
3,739,615	+		EFB2_03579	0.62	-1.4
3,739,616	-		EFB2_03579	0.62	-0.2
3,739,616	-		EFB2_03579	0.62	+0.9
3,739,616	-		EFB2_03579	0.62	-1.8
3,739,616	-		EFB2_03579	0.62	+0.7
3,739,616	-		EFB2_03579	0.62	+1.1
3,739,616	-		EFB2_03579	0.62	+0.8
3,739,616	-		EFB2_03579	0.62	+0.1
3,739,616	-		EFB2_03579	0.62	-0.1
3,739,637	+		EFB2_03579	0.64	+0.5
3,739,637	+		EFB2_03579	0.64	-0.4
3,739,637	+		EFB2_03579	0.64	-0.7
3,739,637	+		EFB2_03579	0.64	-1.2
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