Strain Fitness in Escherichia fergusonii Becca around EFB2_03442

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,592,144	+				-0.6
3,592,144	+				-2.8
3,592,144	+				+1.2
3,592,144	+				+1.2
3,592,144	+				+0.5
3,592,148	+				-2.5
3,592,148	+				+0.1
3,592,148	+				+0.3
3,592,148	+				+0.6
3,592,148	+				-0.2
3,592,148	+				+1.0
3,592,148	+				-0.8
3,592,148	+				-0.8
3,592,148	+				+1.0
3,592,148	+				+1.0
3,592,148	+				+0.9
3,592,148	+				-4.0
3,592,148	+				-0.7
3,592,148	+				+1.3
3,592,148	+				-2.0
3,592,148	+				+0.1
3,592,148	+				-0.2
3,592,148	+				+1.4
3,592,148	+				+0.4
3,592,148	+				+1.6
3,592,163	+				-1.6
3,592,163	+				-2.1
3,592,195	+				-1.5
3,592,195	+				-0.2
3,592,195	+				+0.3
3,592,195	+				+0.3
3,592,195	+				+0.2
3,592,206	+				-3.3
3,592,206	+				+0.3
3,592,330	+		EFB2_03441	0.18	-0.1
3,592,330	+		EFB2_03441	0.18	+0.4
3,592,411	+		EFB2_03441	0.27	-0.7
3,592,546	+		EFB2_03441	0.43	-0.7
3,592,587	+		EFB2_03441	0.47	+1.8
3,592,587	+		EFB2_03441	0.47	+0.6
3,592,615	+		EFB2_03441	0.50	+2.3
3,592,615	+		EFB2_03441	0.50	+0.5
3,592,757	+		EFB2_03441	0.67	-0.3
3,592,757	+		EFB2_03441	0.67	+0.3
3,592,757	+		EFB2_03441	0.67	-0.5
3,592,757	+		EFB2_03441	0.67	+1.0
3,592,801	+		EFB2_03441	0.72	+0.6
3,592,828	+		EFB2_03441	0.75	-0.7
3,592,828	+		EFB2_03441	0.75	+0.8
3,592,828	+		EFB2_03441	0.75	+0.7
3,592,864	+		EFB2_03441	0.79	+1.5
3,592,864	+		EFB2_03441	0.79	+0.6
3,592,990	+				-2.7
3,592,990	+				+1.5
3,592,990	+				-0.1
3,592,993	+				+0.5
3,592,993	+				+0.3
3,592,993	+				+0.4
3,593,048	+				-3.2
3,593,048	+				+2.3
3,593,048	+				-0.2
3,593,048	+				-1.1
3,593,048	+				+0.1
3,594,604	+				-0.5
3,594,604	+				+0.7
3,594,604	+				-1.0
3,594,604	+				-0.7
3,594,604	+				-1.6
3,594,605	-				+0.3
3,594,605	-				-3.5
3,594,605	-				+1.4
3,594,605	-				+1.4
3,594,605	-				-2.3
3,594,611	+				-0.3
3,594,611	+				-1.1
3,594,611	+				+0.6
3,594,612	-				-0.4
3,594,612	-				-0.7
3,594,612	-				-1.0
3,594,612	-				-2.5
3,594,625	+				+2.2
3,594,625	+				+0.5
3,594,625	+				+0.6
3,594,626	-				-0.7
3,594,645	+				+0.3
3,594,645	+				+0.5
3,594,645	+				+0.1
3,594,646	-				-1.8
3,594,646	-				-0.9
3,594,646	-				+0.2
3,594,674	+				+2.5
3,594,674	+				-1.4
3,594,674	+				+0.5
3,594,674	+				-0.4
3,594,675	-				-0.4
3,594,675	-				-0.2
3,594,692	+				+0.5
3,594,693	-				-1.4
3,594,705	+				+0.1
3,594,705	+				-2.2
3,594,705	+				-0.2
3,594,705	+				+0.8
3,594,705	+				+0.5
3,594,705	+				-0.6
3,594,705	+				-0.9
3,594,706	-				+0.6
3,594,706	-				+0.8
3,594,706	-				+1.4
3,594,706	-				-0.5
3,594,706	-				-0.1
3,594,706	-				+0.1
3,594,706	-				+0.7
3,594,706	-				+0.1
3,594,706	-				-0.4
3,594,738	+				+2.6
3,594,739	-				-2.4
3,594,782	-				+0.3
3,594,806	-				-2.4
3,594,806	-				+0.9
3,594,806	-				+0.4
3,594,806	-				-2.0
3,594,806	-				+1.2
3,594,806	-				+1.4
3,594,813	+				+0.2
3,594,813	+				+0.3
3,594,813	+				-0.7
3,594,814	-				+2.2
3,594,814	-				+0.4
3,594,837	+				+0.7
3,594,837	+				+0.1
3,594,837	+				+0.3
3,594,838	-				+0.1
3,594,838	-				+0.1
3,594,838	-				-1.4
3,594,838	-				+1.1
3,594,841	-				-2.2
3,594,845	+				+0.3
3,594,845	+				-0.7
3,594,845	+				-2.1
3,594,845	+				-1.8
3,594,845	+				+0.6
3,594,846	-				+1.1
3,594,846	-				+1.8
3,594,846	-				+1.0
3,594,846	-				+0.4
3,594,846	-				+0.0
3,594,846	-				-1.5
3,594,846	-				-2.7
3,594,867	+				-1.8
3,594,868	-				-1.6
3,594,882	+		EFB2_03443	0.10	+0.2
3,594,882	+		EFB2_03443	0.10	+0.2
3,594,882	+		EFB2_03443	0.10	-2.1
3,594,882	+		EFB2_03443	0.10	+1.0
3,594,882	+		EFB2_03443	0.10	+0.5
3,594,882	+		EFB2_03443	0.10	+0.7
3,594,882	+		EFB2_03443	0.10	-0.5
3,594,886	-		EFB2_03443	0.10	+0.1
3,594,902	+		EFB2_03443	0.11	+0.9
3,594,902	+		EFB2_03443	0.11	+0.2
3,594,902	+		EFB2_03443	0.11	+1.4
3,594,902	+		EFB2_03443	0.11	-1.4
3,594,902	+		EFB2_03443	0.11	+1.1
3,594,902	+		EFB2_03443	0.11	-1.1
3,594,902	+		EFB2_03443	0.11	-0.2
3,594,902	+		EFB2_03443	0.11	+0.8
3,594,902	+		EFB2_03443	0.11	-2.5
3,594,902	+		EFB2_03443	0.11	+0.8
3,594,903	-		EFB2_03443	0.11	+1.5
3,594,903	-		EFB2_03443	0.11	-2.1
3,594,903	-		EFB2_03443	0.11	+0.9
3,594,903	-		EFB2_03443	0.11	-0.3
3,594,903	-		EFB2_03443	0.11	+0.7
3,594,903	-		EFB2_03443	0.11	-0.2
3,594,903	-		EFB2_03443	0.11	+1.0
3,594,903	-		EFB2_03443	0.11	-1.6
3,594,903	-		EFB2_03443	0.11	-0.9
3,594,903	-		EFB2_03443	0.11	-0.2
3,594,903	-		EFB2_03443	0.11	-0.0
3,594,903	-		EFB2_03443	0.11	-1.7
3,594,903	-		EFB2_03443	0.11	-0.1
3,594,903	-		EFB2_03443	0.11	-1.3
3,594,903	-		EFB2_03443	0.11	-1.9
3,594,903	-		EFB2_03443	0.11	-0.3
3,594,903	-		EFB2_03443	0.11	+2.0
3,594,903	-		EFB2_03443	0.11	-3.1
3,594,903	-		EFB2_03443	0.11	-0.3
3,594,903	-		EFB2_03443	0.11	+0.9
3,594,903	-		EFB2_03443	0.11	-2.1
3,594,903	-		EFB2_03443	0.11	+0.2
3,594,903	-		EFB2_03443	0.11	-0.9
3,594,917	+		EFB2_03443	0.12	-0.3
3,594,917	+		EFB2_03443	0.12	+0.1
3,594,917	+		EFB2_03443	0.12	-1.0
3,594,918	-		EFB2_03443	0.12	-0.5
3,594,918	-		EFB2_03443	0.12	+4.1
3,594,931	+		EFB2_03443	0.13	+0.6
3,594,932	-		EFB2_03443	0.13	-3.1
3,594,932	-		EFB2_03443	0.13	-1.5
3,594,932	-		EFB2_03443	0.13	-0.1
3,594,932	-		EFB2_03443	0.13	+0.4
3,594,935	+		EFB2_03443	0.13	-2.1
3,594,935	+		EFB2_03443	0.13	+1.4
3,594,935	+		EFB2_03443	0.13	-0.0
3,594,935	+		EFB2_03443	0.13	+1.2
3,594,936	-		EFB2_03443	0.13	-1.0
3,594,936	-		EFB2_03443	0.13	+1.3
3,594,936	-		EFB2_03443	0.13	+0.9
3,594,936	-		EFB2_03443	0.13	-0.2
3,594,936	-		EFB2_03443	0.13	-0.3
3,594,954	+		EFB2_03443	0.14	+1.2
3,594,954	+		EFB2_03443	0.14	+0.7
3,594,954	+		EFB2_03443	0.14	-0.4
3,594,955	-		EFB2_03443	0.14	+0.8
3,594,955	-		EFB2_03443	0.14	+1.7
3,594,955	-		EFB2_03443	0.14	-1.3
3,594,969	-		EFB2_03443	0.15	+0.4
3,594,981	+		EFB2_03443	0.15	+1.7
3,594,981	+		EFB2_03443	0.15	+1.8
3,594,982	-		EFB2_03443	0.15	+0.2
3,594,982	-		EFB2_03443	0.15	+0.5
3,594,982	-		EFB2_03443	0.15	+2.7
3,594,982	-		EFB2_03443	0.15	+0.2
3,594,996	+		EFB2_03443	0.16	-0.6
3,594,996	+		EFB2_03443	0.16	-0.1
3,594,996	+		EFB2_03443	0.16	-0.4
3,594,996	+		EFB2_03443	0.16	-0.8
3,594,996	+		EFB2_03443	0.16	-0.2
3,594,996	+		EFB2_03443	0.16	-3.1
3,594,996	+		EFB2_03443	0.16	+1.3
3,594,997	-		EFB2_03443	0.16	+0.6
3,594,997	-		EFB2_03443	0.16	+0.5
3,594,997	-		EFB2_03443	0.16	+1.7
3,594,997	-		EFB2_03443	0.16	+0.1
3,594,997	-		EFB2_03443	0.16	-1.7
3,595,024	+		EFB2_03443	0.18	+1.0
3,595,024	+		EFB2_03443	0.18	+1.3
3,595,024	+		EFB2_03443	0.18	-1.2
3,595,024	+		EFB2_03443	0.18	+0.1
3,595,024	+		EFB2_03443	0.18	-0.4
3,595,024	+		EFB2_03443	0.18	+2.5
3,595,024	+		EFB2_03443	0.18	-1.6
3,595,024	+		EFB2_03443	0.18	+2.3
3,595,024	+		EFB2_03443	0.18	+0.1
3,595,024	+		EFB2_03443	0.18	-0.1
3,595,025	-		EFB2_03443	0.18	+0.8
3,595,025	-		EFB2_03443	0.18	-0.4
3,595,025	-		EFB2_03443	0.18	-1.7
3,595,025	-		EFB2_03443	0.18	-2.3
3,595,025	-		EFB2_03443	0.18	-3.4
3,595,025	-		EFB2_03443	0.18	+1.3
3,595,025	-		EFB2_03443	0.18	+1.7
3,595,025	-		EFB2_03443	0.18	-1.9
3,595,025	-		EFB2_03443	0.18	+0.4
3,595,025	-		EFB2_03443	0.18	-1.4
3,595,025	-		EFB2_03443	0.18	+0.2
3,595,025	-		EFB2_03443	0.18	+1.9
3,595,025	-		EFB2_03443	0.18	-0.7
3,595,026	+		EFB2_03443	0.18	-1.1
3,595,026	+		EFB2_03443	0.18	+1.5
3,595,026	+		EFB2_03443	0.18	+1.1
3,595,026	+		EFB2_03443	0.18	+0.5
3,595,026	+		EFB2_03443	0.18	+0.7
3,595,026	+		EFB2_03443	0.18	-0.0
3,595,026	+		EFB2_03443	0.18	-1.2
3,595,026	+		EFB2_03443	0.18	-0.0
3,595,026	+		EFB2_03443	0.18	-0.1
3,595,027	-		EFB2_03443	0.18	-0.2
3,595,027	-		EFB2_03443	0.18	+1.1
3,595,027	-		EFB2_03443	0.18	+0.5
3,595,027	-		EFB2_03443	0.18	+1.2
3,595,027	-		EFB2_03443	0.18	-0.2
3,595,027	-		EFB2_03443	0.18	-0.4
3,595,027	-		EFB2_03443	0.18	+0.2
3,595,027	-		EFB2_03443	0.18	+0.8
3,595,027	-		EFB2_03443	0.18	-1.0
3,595,027	-		EFB2_03443	0.18	+0.8
3,595,057	-		EFB2_03443	0.19	-0.7
3,595,057	-		EFB2_03443	0.19	+1.7
3,595,146	+		EFB2_03443	0.24	-1.0
3,595,146	+		EFB2_03443	0.24	-1.8
3,595,147	-		EFB2_03443	0.24	-1.1
3,595,147	-		EFB2_03443	0.24	-2.9
3,595,147	-		EFB2_03443	0.24	-3.1
3,595,147	-		EFB2_03443	0.24	+0.0
3,595,165	-		EFB2_03443	0.25	-0.9
3,595,189	+		EFB2_03443	0.27	+2.7
3,595,236	+		EFB2_03443	0.29	+0.3
3,595,259	+		EFB2_03443	0.30	+0.8
3,595,259	+		EFB2_03443	0.30	+3.9
3,595,292	+		EFB2_03443	0.32	-0.9
3,595,292	+		EFB2_03443	0.32	+0.4
3,595,293	-		EFB2_03443	0.32	-1.6
3,595,320	+		EFB2_03443	0.33	+0.8
3,595,320	+		EFB2_03443	0.33	+0.6
3,595,320	+		EFB2_03443	0.33	+0.1
3,595,320	+		EFB2_03443	0.33	-0.1
3,595,320	+		EFB2_03443	0.33	+1.1
3,595,320	+		EFB2_03443	0.33	+0.9
3,595,320	+		EFB2_03443	0.33	-1.3
3,595,321	-		EFB2_03443	0.34	-0.2
3,595,321	-		EFB2_03443	0.34	-0.1
3,595,321	-		EFB2_03443	0.34	-0.5
3,595,321	-		EFB2_03443	0.34	-1.1
3,595,399	-		EFB2_03443	0.38	+0.6
3,595,410	+		EFB2_03443	0.38	+1.0
3,595,410	+		EFB2_03443	0.38	-0.4
3,595,410	+		EFB2_03443	0.38	-1.2
3,595,410	+		EFB2_03443	0.38	+0.2
3,595,410	+		EFB2_03443	0.38	-0.5
3,595,411	-		EFB2_03443	0.38	-1.1
3,595,469	+		EFB2_03443	0.41	-0.9
3,595,469	+		EFB2_03443	0.41	+0.2
3,595,469	+		EFB2_03443	0.41	+1.0
3,595,470	-		EFB2_03443	0.41	+1.8
3,595,492	+		EFB2_03443	0.43	+1.7
3,595,492	+		EFB2_03443	0.43	-2.9
3,595,493	-		EFB2_03443	0.43	-0.5
3,595,493	-		EFB2_03443	0.43	+0.5
3,595,493	-		EFB2_03443	0.43	+0.4
3,595,493	-		EFB2_03443	0.43	+2.9
3,595,493	-		EFB2_03443	0.43	-1.7
3,595,521	+		EFB2_03443	0.44	+2.7
3,595,559	-		EFB2_03443	0.46	+1.6
3,595,569	+		EFB2_03443	0.47	+1.2
3,595,569	+		EFB2_03443	0.47	+0.4
3,595,569	+		EFB2_03443	0.47	+1.1
3,595,570	-		EFB2_03443	0.47	-0.6
3,595,570	-		EFB2_03443	0.47	+1.3
3,595,570	-		EFB2_03443	0.47	-1.5
3,595,570	-		EFB2_03443	0.47	-1.2
3,595,575	+		EFB2_03443	0.47	-0.1
3,595,575	+		EFB2_03443	0.47	-1.1
3,595,576	-		EFB2_03443	0.47	-2.2
3,595,576	-		EFB2_03443	0.47	-0.2
3,595,576	-		EFB2_03443	0.47	+0.2