Strain Fitness in Escherichia fergusonii Becca around EFB2_02528

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,661,664	+				+1.6
2,661,664	+				-2.3
2,661,681	+				+0.2
2,661,682	-				-0.3
2,661,698	+				-2.3
2,661,776	+		EFB2_02527	0.12	+0.7
2,661,790	+		EFB2_02527	0.14	-0.9
2,661,790	+		EFB2_02527	0.14	+0.9
2,661,790	+		EFB2_02527	0.14	+1.2
2,661,791	-		EFB2_02527	0.14	+1.1
2,661,849	+		EFB2_02527	0.20	+0.6
2,661,849	+		EFB2_02527	0.20	-0.3
2,661,849	+		EFB2_02527	0.20	+0.8
2,661,854	+		EFB2_02527	0.21	+1.1
2,661,855	-		EFB2_02527	0.21	+0.2
2,661,855	-		EFB2_02527	0.21	-0.5
2,661,855	-		EFB2_02527	0.21	+0.4
2,661,895	+		EFB2_02527	0.26	+0.5
2,661,895	+		EFB2_02527	0.26	-2.4
2,661,895	+		EFB2_02527	0.26	+1.1
2,661,896	-		EFB2_02527	0.26	+1.8
2,661,896	-		EFB2_02527	0.26	+0.8
2,661,896	-		EFB2_02527	0.26	+1.4
2,661,896	-		EFB2_02527	0.26	+0.3
2,661,896	-		EFB2_02527	0.26	+1.9
2,661,896	-		EFB2_02527	0.26	-0.4
2,661,896	-		EFB2_02527	0.26	-1.9
2,661,896	-		EFB2_02527	0.26	+0.5
2,661,896	-		EFB2_02527	0.26	-0.6
2,661,906	+		EFB2_02527	0.27	+0.8
2,661,906	+		EFB2_02527	0.27	+0.4
2,661,906	+		EFB2_02527	0.27	-1.1
2,661,906	+		EFB2_02527	0.27	+0.2
2,661,906	+		EFB2_02527	0.27	-0.5
2,661,906	+		EFB2_02527	0.27	+0.4
2,661,906	+		EFB2_02527	0.27	+1.3
2,661,906	+		EFB2_02527	0.27	-0.2
2,661,906	+		EFB2_02527	0.27	-2.2
2,661,906	+		EFB2_02527	0.27	-0.7
2,661,906	+		EFB2_02527	0.27	+0.4
2,661,906	+		EFB2_02527	0.27	+0.6
2,661,906	+		EFB2_02527	0.27	+0.4
2,661,906	+		EFB2_02527	0.27	+0.3
2,661,906	+		EFB2_02527	0.27	+0.7
2,661,906	+		EFB2_02527	0.27	+0.4
2,661,907	-		EFB2_02527	0.27	+0.2
2,661,907	-		EFB2_02527	0.27	-0.2
2,661,907	-		EFB2_02527	0.27	+1.5
2,661,907	-		EFB2_02527	0.27	+1.2
2,661,907	-		EFB2_02527	0.27	+1.1
2,661,907	-		EFB2_02527	0.27	+0.3
2,661,907	-		EFB2_02527	0.27	-0.5
2,661,907	-		EFB2_02527	0.27	+0.5
2,661,907	-		EFB2_02527	0.27	+1.7
2,661,907	-		EFB2_02527	0.27	+1.9
2,661,907	-		EFB2_02527	0.27	+1.5
2,661,907	-		EFB2_02527	0.27	-1.6
2,661,907	-		EFB2_02527	0.27	+1.3
2,661,907	-		EFB2_02527	0.27	+1.5
2,661,907	-		EFB2_02527	0.27	-1.7
2,661,907	-		EFB2_02527	0.27	-2.4
2,661,910	+		EFB2_02527	0.27	-0.6
2,661,910	+		EFB2_02527	0.27	+1.0
2,661,910	+		EFB2_02527	0.27	+1.5
2,661,910	+		EFB2_02527	0.27	-1.7
2,661,910	+		EFB2_02527	0.27	+1.4
2,661,910	+		EFB2_02527	0.27	+1.6
2,661,910	+		EFB2_02527	0.27	+0.7
2,661,910	+		EFB2_02527	0.27	+1.0
2,661,910	+		EFB2_02527	0.27	-0.7
2,661,910	+		EFB2_02527	0.27	-0.3
2,661,910	+		EFB2_02527	0.27	-0.9
2,661,910	+		EFB2_02527	0.27	+0.3
2,661,910	+		EFB2_02527	0.27	+1.0
2,661,910	+		EFB2_02527	0.27	+0.7
2,661,910	+		EFB2_02527	0.27	-0.6
2,661,910	+		EFB2_02527	0.27	+0.6
2,661,910	+		EFB2_02527	0.27	-2.7
2,661,910	+		EFB2_02527	0.27	+1.0
2,661,910	+		EFB2_02527	0.27	+0.7
2,661,910	+		EFB2_02527	0.27	+0.6
2,661,910	+		EFB2_02527	0.27	-1.2
2,661,910	+		EFB2_02527	0.27	-0.0
2,661,911	-		EFB2_02527	0.27	+0.1
2,661,911	-		EFB2_02527	0.27	+0.8
2,661,911	-		EFB2_02527	0.27	+0.1
2,661,911	-		EFB2_02527	0.27	-0.3
2,661,911	-		EFB2_02527	0.27	+1.8
2,661,911	-		EFB2_02527	0.27	-0.3
2,661,911	-		EFB2_02527	0.27	+1.2
2,661,911	-		EFB2_02527	0.27	+0.7
2,661,911	-		EFB2_02527	0.27	+1.1
2,661,911	-		EFB2_02527	0.27	-1.5
2,661,911	-		EFB2_02527	0.27	-0.0
2,661,911	-		EFB2_02527	0.27	+0.4
2,661,911	-		EFB2_02527	0.27	-0.1
2,661,911	-		EFB2_02527	0.27	-1.8
2,661,911	-		EFB2_02527	0.27	+0.3
2,661,911	-		EFB2_02527	0.27	+1.4
2,661,911	-		EFB2_02527	0.27	-0.9
2,661,911	-		EFB2_02527	0.27	-0.0
2,661,925	+		EFB2_02527	0.29	-0.6
2,661,925	+		EFB2_02527	0.29	+0.9
2,661,925	+		EFB2_02527	0.29	-0.3
2,661,925	+		EFB2_02527	0.29	-1.4
2,661,926	-		EFB2_02527	0.29	+3.6
2,661,926	-		EFB2_02527	0.29	-0.0
2,661,932	-		EFB2_02527	0.30	-1.5
2,661,983	+		EFB2_02527	0.35	+1.3
2,661,984	-		EFB2_02527	0.36	+0.9
2,661,984	-		EFB2_02527	0.36	+2.1
2,661,985	+		EFB2_02527	0.36	+1.5
2,661,985	+		EFB2_02527	0.36	+0.3
2,661,985	+		EFB2_02527	0.36	-0.1
2,661,985	+		EFB2_02527	0.36	+0.7
2,661,985	+		EFB2_02527	0.36	-0.4
2,661,985	+		EFB2_02527	0.36	-0.1
2,661,985	+		EFB2_02527	0.36	+0.8
2,661,986	-		EFB2_02527	0.36	+0.9
2,661,986	-		EFB2_02527	0.36	-2.0
2,661,986	-		EFB2_02527	0.36	+0.4
2,661,986	-		EFB2_02527	0.36	+0.8
2,661,986	-		EFB2_02527	0.36	-0.0
2,662,010	+		EFB2_02527	0.38	+2.3
2,662,010	+		EFB2_02527	0.38	+0.9
2,662,011	-		EFB2_02527	0.39	-0.5
2,662,028	+		EFB2_02527	0.40	+0.1
2,662,028	+		EFB2_02527	0.40	+0.3
2,662,028	+		EFB2_02527	0.40	+1.5
2,662,028	+		EFB2_02527	0.40	+1.8
2,662,028	+		EFB2_02527	0.40	+0.8
2,662,029	-		EFB2_02527	0.41	-0.3
2,662,029	-		EFB2_02527	0.41	-0.9
2,662,029	-		EFB2_02527	0.41	+2.0
2,662,076	+		EFB2_02527	0.46	+0.9
2,662,319	+		EFB2_02527	0.73	-2.0
2,662,319	+		EFB2_02527	0.73	+1.2
2,662,319	+		EFB2_02527	0.73	-1.5
2,662,320	-		EFB2_02527	0.73	+1.0
2,662,320	-		EFB2_02527	0.73	-0.5
2,662,320	-		EFB2_02527	0.73	+1.5
2,662,372	+		EFB2_02527	0.79	-2.4
2,662,372	+		EFB2_02527	0.79	-1.0
2,662,372	+		EFB2_02527	0.79	+2.3
2,662,372	+		EFB2_02527	0.79	+1.2
2,662,372	+		EFB2_02527	0.79	-1.0
2,662,373	-		EFB2_02527	0.79	-0.3
2,662,373	-		EFB2_02527	0.79	-1.7
2,662,375	+		EFB2_02527	0.79	-0.0
2,662,375	+		EFB2_02527	0.79	+0.8
2,662,375	+		EFB2_02527	0.79	+1.7
2,662,375	+		EFB2_02527	0.79	-0.5
2,662,375	+		EFB2_02527	0.79	+0.2
2,662,375	+		EFB2_02527	0.79	-0.0
2,662,375	+		EFB2_02527	0.79	+1.5
2,662,375	+		EFB2_02527	0.79	+0.5
2,662,375	+		EFB2_02527	0.79	+1.0
2,662,375	+		EFB2_02527	0.79	+0.4
2,662,375	+		EFB2_02527	0.79	-2.6
2,662,375	+		EFB2_02527	0.79	+1.3
2,662,375	+		EFB2_02527	0.79	+0.9
2,662,375	+		EFB2_02527	0.79	+1.7
2,662,375	+		EFB2_02527	0.79	+0.6
2,662,376	-		EFB2_02527	0.79	-0.3
2,662,376	-		EFB2_02527	0.79	+3.3
2,662,376	-		EFB2_02527	0.79	+2.5
2,662,376	-		EFB2_02527	0.79	+1.7
2,662,376	-		EFB2_02527	0.79	+1.9
2,662,376	-		EFB2_02527	0.79	+1.3
2,662,387	+		EFB2_02527	0.81	-0.9
2,662,387	+		EFB2_02527	0.81	-0.1
2,662,387	+		EFB2_02527	0.81	-1.3
2,662,387	+		EFB2_02527	0.81	-1.5
2,662,387	+		EFB2_02527	0.81	+0.4
2,662,387	+		EFB2_02527	0.81	-0.1
2,662,388	-		EFB2_02527	0.81	+0.8
2,662,388	-		EFB2_02527	0.81	+0.7
2,662,388	-		EFB2_02527	0.81	+4.9
2,662,388	-		EFB2_02527	0.81	-0.3
2,662,388	-		EFB2_02527	0.81	-1.2
2,662,418	+		EFB2_02527	0.84	-0.2
2,662,419	-		EFB2_02527	0.84	-0.7
2,662,419	-		EFB2_02527	0.84	+0.3
2,662,456	+		EFB2_02527	0.88	+0.3
2,662,456	+		EFB2_02527	0.88	-1.3
2,662,456	+		EFB2_02527	0.88	-0.3
2,662,456	+		EFB2_02527	0.88	-1.9
2,662,456	+		EFB2_02527	0.88	-0.9
2,662,456	+		EFB2_02527	0.88	+0.1
2,662,456	+		EFB2_02527	0.88	-1.2
2,662,457	-		EFB2_02527	0.88	-0.5
2,662,457	-		EFB2_02527	0.88	+1.9
2,662,457	-		EFB2_02527	0.88	-2.4
2,662,484	+				+0.1
2,662,485	-				+0.7
2,662,503	-				-0.9
2,662,528	+				+0.8
2,662,528	+				+0.3
2,662,528	+				+0.4
2,662,528	+				+0.3
2,662,529	-				-0.3
2,662,529	-				+1.3
2,662,529	-				+0.2
2,662,529	-				+0.7
2,662,584	+				+0.8
2,662,593	+				-1.2
2,662,593	+				+0.5
2,662,594	-				-2.3
2,662,594	-				-2.1
2,662,594	-				+0.8
2,662,604	+				-0.6
2,662,604	+				-1.6
2,662,605	-				-0.4
2,662,609	+				+1.4
2,662,609	+				+1.2
2,662,609	+				-0.1
2,662,609	+				-0.5
2,662,610	-				-2.2
2,662,610	-				+1.1
2,662,610	-				+0.8
2,662,610	-				-1.4
2,662,610	-				+0.3
2,662,610	-				+1.2
2,662,610	-				-0.2
2,662,628	-				-0.3
2,662,652	-				+2.3
2,662,652	-				+0.7
2,662,652	-				+1.6
2,662,703	+				+1.0
2,662,704	-				-1.6
2,662,704	-				-1.4
2,662,717	+				-2.7
2,662,718	-				+1.0
2,662,718	-				-0.3
2,662,718	-				+0.9
2,662,718	-				+0.7
2,662,718	-				-0.7
2,662,739	+				-1.3
2,662,739	+				+2.1
2,662,739	+				+0.6
2,662,740	-		EFB2_02528	0.10	+1.2
2,662,740	-		EFB2_02528	0.10	-0.0
2,662,740	-		EFB2_02528	0.10	-3.0
2,662,740	-		EFB2_02528	0.10	+0.6
2,662,773	+		EFB2_02528	0.14	-2.2
2,662,773	+		EFB2_02528	0.14	+0.5
2,662,773	+		EFB2_02528	0.14	+1.0
2,662,773	+		EFB2_02528	0.14	+0.7
2,662,774	-		EFB2_02528	0.14	+1.2
2,662,774	-		EFB2_02528	0.14	-0.0
2,662,774	-		EFB2_02528	0.14	+1.1
2,662,774	-		EFB2_02528	0.14	-0.7
2,662,774	-		EFB2_02528	0.14	-1.4
2,662,774	-		EFB2_02528	0.14	+0.1
2,662,774	-		EFB2_02528	0.14	-0.7
2,662,774	-		EFB2_02528	0.14	+0.7
2,662,774	-		EFB2_02528	0.14	-1.5
2,662,774	-		EFB2_02528	0.14	-1.7
2,662,774	-		EFB2_02528	0.14	+0.3
2,662,774	-		EFB2_02528	0.14	+1.2
2,662,774	-		EFB2_02528	0.14	-0.4
2,662,774	-		EFB2_02528	0.14	-0.9
2,662,774	-		EFB2_02528	0.14	-2.3
2,662,775	+		EFB2_02528	0.14	+0.7
2,662,775	+		EFB2_02528	0.14	-0.9
2,662,775	+		EFB2_02528	0.14	+2.0
2,662,775	+		EFB2_02528	0.14	-2.5
2,662,775	+		EFB2_02528	0.14	+0.3
2,662,776	-		EFB2_02528	0.14	-0.3
2,662,776	-		EFB2_02528	0.14	-0.7
2,662,776	-		EFB2_02528	0.14	-1.7
2,662,776	-		EFB2_02528	0.14	-1.5
2,662,776	-		EFB2_02528	0.14	+0.3
2,662,776	-		EFB2_02528	0.14	-0.3
2,662,776	-		EFB2_02528	0.14	+0.8
2,662,776	-		EFB2_02528	0.14	-3.0
2,662,776	-		EFB2_02528	0.14	-1.5
2,662,776	-		EFB2_02528	0.14	-0.5
2,662,776	-		EFB2_02528	0.14	-2.2
2,662,794	-		EFB2_02528	0.16	+1.1
2,662,835	-		EFB2_02528	0.21	+1.3
2,662,950	+		EFB2_02528	0.35	+0.7
2,662,951	-		EFB2_02528	0.35	-1.2
2,662,951	-		EFB2_02528	0.35	+0.1
2,662,951	-		EFB2_02528	0.35	+0.7
2,662,951	-		EFB2_02528	0.35	+2.3
2,662,951	-		EFB2_02528	0.35	-0.4
2,662,986	+		EFB2_02528	0.39	+1.3
2,662,987	-		EFB2_02528	0.39	-0.5
2,662,987	-		EFB2_02528	0.39	-2.0
2,662,987	-		EFB2_02528	0.39	-1.7
2,663,014	+		EFB2_02528	0.42	-1.6
2,663,015	-		EFB2_02528	0.43	-1.0
2,663,015	-		EFB2_02528	0.43	-0.9
2,663,093	+		EFB2_02528	0.52	-0.5
2,663,195	+		EFB2_02528	0.64	+2.3
2,663,219	+		EFB2_02528	0.67	+0.3
2,663,220	-		EFB2_02528	0.67	+0.8
2,663,220	-		EFB2_02528	0.67	-2.6
2,663,220	-		EFB2_02528	0.67	-0.3
2,663,228	+		EFB2_02528	0.68	-1.5
2,663,229	-		EFB2_02528	0.68	+1.2
2,663,229	-		EFB2_02528	0.68	-0.5
2,663,229	-		EFB2_02528	0.68	-0.3
2,663,229	-		EFB2_02528	0.68	-1.5
2,663,229	-		EFB2_02528	0.68	+0.7
2,663,245	+		EFB2_02528	0.70	-0.0
2,663,261	+		EFB2_02528	0.72	-0.0
2,663,316	-		EFB2_02528	0.78	+1.3
2,663,327	-		EFB2_02528	0.79	-0.5
2,663,327	-		EFB2_02528	0.79	+0.0
2,663,327	-		EFB2_02528	0.79	-2.0
2,663,327	-		EFB2_02528	0.79	-1.0
2,663,354	+		EFB2_02528	0.83	+0.1
2,663,354	+		EFB2_02528	0.83	+1.3
2,663,354	+		EFB2_02528	0.83	-0.0
2,663,355	-		EFB2_02528	0.83	+0.5
2,663,431	+				+0.3
2,663,431	+				+1.6
2,663,431	+				+2.5
2,663,432	-				+1.9
2,663,464	+				+1.3
2,663,464	+				-2.2
2,663,464	+				+0.5
2,663,465	-				+1.2
2,663,468	-				-2.6
2,663,478	+				-0.9
2,663,531	+				-0.1
2,663,531	+				+0.8
2,663,531	+				-0.3
2,663,531	+				+1.3
2,663,531	+				-0.6
2,663,531	+				-0.7
2,663,531	+				+0.6
2,663,531	+				-0.2
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