Strain Fitness in Escherichia fergusonii Becca around EFB2_01554

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,625,826	+				-1.3
1,625,827	-				+0.4
1,625,827	-				+2.0
1,625,827	-				-0.1
1,625,838	-				+2.6
1,625,854	-				-0.9
1,625,915	+				-0.4
1,625,916	-				+0.3
1,625,916	-				+0.7
1,625,916	-				+0.5
1,625,919	+				-3.2
1,625,958	+				-2.7
1,625,958	+				+1.3
1,625,959	-				-1.3
1,626,012	+		EFB2_01553	0.15	+2.8
1,626,013	-		EFB2_01553	0.15	-1.4
1,626,033	+		EFB2_01553	0.17	-1.3
1,626,034	-		EFB2_01553	0.18	+0.4
1,626,034	-		EFB2_01553	0.18	+2.1
1,626,056	-		EFB2_01553	0.20	-0.5
1,626,056	-		EFB2_01553	0.20	-0.6
1,626,105	+		EFB2_01553	0.25	-2.4
1,626,105	+		EFB2_01553	0.25	+0.4
1,626,105	+		EFB2_01553	0.25	-3.0
1,626,105	+		EFB2_01553	0.25	-0.6
1,626,105	+		EFB2_01553	0.25	+0.7
1,626,105	+		EFB2_01553	0.25	-0.0
1,626,105	+		EFB2_01553	0.25	-1.3
1,626,105	+		EFB2_01553	0.25	+0.9
1,626,106	-		EFB2_01553	0.26	-1.1
1,626,106	-		EFB2_01553	0.26	-2.5
1,626,106	-		EFB2_01553	0.26	-0.9
1,626,106	-		EFB2_01553	0.26	+0.3
1,626,106	-		EFB2_01553	0.26	+2.1
1,626,109	+		EFB2_01553	0.26	-2.0
1,626,109	+		EFB2_01553	0.26	+1.3
1,626,109	+		EFB2_01553	0.26	+0.7
1,626,109	+		EFB2_01553	0.26	-0.8
1,626,109	+		EFB2_01553	0.26	+0.4
1,626,109	+		EFB2_01553	0.26	+0.3
1,626,109	+		EFB2_01553	0.26	+0.7
1,626,109	+		EFB2_01553	0.26	-0.7
1,626,109	+		EFB2_01553	0.26	-0.4
1,626,109	+		EFB2_01553	0.26	-0.1
1,626,109	+		EFB2_01553	0.26	+2.4
1,626,110	-		EFB2_01553	0.26	+2.2
1,626,110	-		EFB2_01553	0.26	-0.6
1,626,110	-		EFB2_01553	0.26	-0.1
1,626,110	-		EFB2_01553	0.26	-1.6
1,626,110	-		EFB2_01553	0.26	+0.6
1,626,110	-		EFB2_01553	0.26	+0.7
1,626,110	-		EFB2_01553	0.26	+0.5
1,626,110	-		EFB2_01553	0.26	+0.9
1,626,110	-		EFB2_01553	0.26	+1.0
1,626,110	-		EFB2_01553	0.26	+0.9
1,626,110	-		EFB2_01553	0.26	-2.5
1,626,120	-		EFB2_01553	0.27	+1.4
1,626,120	-		EFB2_01553	0.27	-0.2
1,626,120	-		EFB2_01553	0.27	+0.4
1,626,132	+		EFB2_01553	0.29	+2.1
1,626,132	+		EFB2_01553	0.29	+2.1
1,626,133	-		EFB2_01553	0.29	-0.8
1,626,170	-		EFB2_01553	0.33	+2.8
1,626,170	-		EFB2_01553	0.33	-0.3
1,626,209	-		EFB2_01553	0.37	+1.3
1,626,209	-		EFB2_01553	0.37	+0.2
1,626,209	-		EFB2_01553	0.37	-2.7
1,626,210	+		EFB2_01553	0.37	-0.6
1,626,210	+		EFB2_01553	0.37	+0.4
1,626,210	+		EFB2_01553	0.37	+0.9
1,626,210	+		EFB2_01553	0.37	+0.8
1,626,210	+		EFB2_01553	0.37	-2.3
1,626,210	+		EFB2_01553	0.37	+0.1
1,626,211	-		EFB2_01553	0.37	+0.4
1,626,211	-		EFB2_01553	0.37	-2.6
1,626,211	-		EFB2_01553	0.37	+0.1
1,626,244	+		EFB2_01553	0.41	-1.4
1,626,244	+		EFB2_01553	0.41	+1.3
1,626,244	+		EFB2_01553	0.41	+1.2
1,626,244	+		EFB2_01553	0.41	-1.7
1,626,245	-		EFB2_01553	0.41	-0.4
1,626,351	+		EFB2_01553	0.53	+0.8
1,626,352	-		EFB2_01553	0.53	+0.8
1,626,355	-		EFB2_01553	0.54	-1.0
1,626,378	+		EFB2_01553	0.56	-0.7
1,626,379	-		EFB2_01553	0.56	+0.8
1,626,410	+		EFB2_01553	0.60	-3.2
1,626,410	+		EFB2_01553	0.60	-0.0
1,626,411	-		EFB2_01553	0.60	-0.7
1,626,423	+		EFB2_01553	0.61	-0.9
1,626,423	+		EFB2_01553	0.61	+1.0
1,626,423	+		EFB2_01553	0.61	-1.3
1,626,424	-		EFB2_01553	0.61	+1.1
1,626,424	-		EFB2_01553	0.61	-0.6
1,626,424	-		EFB2_01553	0.61	+0.5
1,626,473	+		EFB2_01553	0.67	-1.0
1,626,473	+		EFB2_01553	0.67	-2.1
1,626,473	+		EFB2_01553	0.67	+0.1
1,626,473	+		EFB2_01553	0.67	-0.3
1,626,473	+		EFB2_01553	0.67	+0.1
1,626,474	-		EFB2_01553	0.67	+1.5
1,626,474	-		EFB2_01553	0.67	+0.4
1,626,478	-		EFB2_01553	0.67	+0.5
1,626,489	+		EFB2_01553	0.69	+0.7
1,626,489	+		EFB2_01553	0.69	-0.9
1,626,490	-		EFB2_01553	0.69	+0.9
1,626,490	-		EFB2_01553	0.69	+0.7
1,626,503	+		EFB2_01553	0.70	+3.3
1,626,503	+		EFB2_01553	0.70	-0.9
1,626,504	-		EFB2_01553	0.70	-0.3
1,626,504	-		EFB2_01553	0.70	-1.9
1,626,504	-		EFB2_01553	0.70	-1.9
1,626,504	-		EFB2_01553	0.70	-0.7
1,626,517	-		EFB2_01553	0.72	+1.9
1,626,517	-		EFB2_01553	0.72	+0.5
1,626,517	-		EFB2_01553	0.72	+1.0
1,626,517	-		EFB2_01553	0.72	-0.4
1,626,520	+		EFB2_01553	0.72	+3.8
1,626,520	+		EFB2_01553	0.72	-0.0
1,626,520	+		EFB2_01553	0.72	-0.6
1,626,520	+		EFB2_01553	0.72	+0.2
1,626,521	-		EFB2_01553	0.72	+1.4
1,626,521	-		EFB2_01553	0.72	-0.7
1,626,524	+		EFB2_01553	0.73	-0.7
1,626,524	+		EFB2_01553	0.73	-0.2
1,626,524	+		EFB2_01553	0.73	-1.7
1,626,524	+		EFB2_01553	0.73	+0.3
1,626,524	+		EFB2_01553	0.73	-0.5
1,626,524	+		EFB2_01553	0.73	-1.3
1,626,525	-		EFB2_01553	0.73	-1.2
1,626,525	-		EFB2_01553	0.73	+1.4
1,626,527	+		EFB2_01553	0.73	-1.4
1,626,527	+		EFB2_01553	0.73	+0.5
1,626,527	+		EFB2_01553	0.73	+0.6
1,626,527	+		EFB2_01553	0.73	+1.1
1,626,528	-		EFB2_01553	0.73	-0.3
1,626,528	-		EFB2_01553	0.73	+0.9
1,626,528	-		EFB2_01553	0.73	+0.7
1,626,528	-		EFB2_01553	0.73	-1.1
1,626,528	-		EFB2_01553	0.73	+0.5
1,626,528	-		EFB2_01553	0.73	-0.3
1,626,528	-		EFB2_01553	0.73	-1.4
1,626,561	+		EFB2_01553	0.77	+0.7
1,626,561	+		EFB2_01553	0.77	-1.9
1,626,562	-		EFB2_01553	0.77	-0.1
1,626,562	-		EFB2_01553	0.77	-1.3
1,626,573	-		EFB2_01553	0.78	-1.7
1,626,573	-		EFB2_01553	0.78	+0.5
1,626,626	+		EFB2_01553	0.84	+0.9
1,626,626	+		EFB2_01553	0.84	+0.1
1,626,626	+		EFB2_01553	0.84	-0.7
1,626,626	+		EFB2_01553	0.84	+0.5
1,626,626	+		EFB2_01553	0.84	+0.7
1,626,626	+		EFB2_01553	0.84	-0.0
1,626,627	-		EFB2_01553	0.84	+2.1
1,626,627	-		EFB2_01553	0.84	+1.1
1,626,627	-		EFB2_01553	0.84	-0.3
1,626,750	+				-3.5
1,626,766	+				+1.1
1,626,775	-				+0.8
1,626,787	+				+1.2
1,626,787	+				+0.1
1,626,787	+				+1.7
1,626,787	+				-0.3
1,626,788	-				+0.6
1,626,807	+				+1.4
1,626,808	-				-1.1
1,626,846	+				+0.9
1,626,847	-				-2.0
1,626,913	-		EFB2_01554	0.11	+0.5
1,626,913	-		EFB2_01554	0.11	+0.2
1,626,913	-		EFB2_01554	0.11	-0.0
1,626,915	+		EFB2_01554	0.11	+1.6
1,626,916	-		EFB2_01554	0.11	+0.7
1,626,916	-		EFB2_01554	0.11	+0.1
1,626,916	-		EFB2_01554	0.11	-0.3
1,626,916	-		EFB2_01554	0.11	-2.7
1,626,916	-		EFB2_01554	0.11	-1.2
1,626,939	+		EFB2_01554	0.14	+2.4
1,627,033	+		EFB2_01554	0.24	+0.4
1,627,046	+		EFB2_01554	0.26	+1.4
1,627,047	-		EFB2_01554	0.26	+1.8
1,627,047	-		EFB2_01554	0.26	+0.0
1,627,047	-		EFB2_01554	0.26	+0.0
1,627,049	+		EFB2_01554	0.26	-0.3
1,627,049	+		EFB2_01554	0.26	-0.7
1,627,049	+		EFB2_01554	0.26	-0.6
1,627,049	+		EFB2_01554	0.26	-1.8
1,627,049	+		EFB2_01554	0.26	-3.8
1,627,049	+		EFB2_01554	0.26	-2.5
1,627,049	+		EFB2_01554	0.26	+2.1
1,627,049	+		EFB2_01554	0.26	-0.7
1,627,049	+		EFB2_01554	0.26	-0.2
1,627,049	+		EFB2_01554	0.26	-2.1
1,627,050	-		EFB2_01554	0.26	-0.6
1,627,050	-		EFB2_01554	0.26	-0.4
1,627,050	-		EFB2_01554	0.26	+0.0
1,627,050	-		EFB2_01554	0.26	+0.9
1,627,050	-		EFB2_01554	0.26	+1.9
1,627,050	-		EFB2_01554	0.26	+0.5
1,627,050	-		EFB2_01554	0.26	+3.1
1,627,050	-		EFB2_01554	0.26	+1.8
1,627,050	-		EFB2_01554	0.26	-0.9
1,627,050	-		EFB2_01554	0.26	+0.5
1,627,050	-		EFB2_01554	0.26	-1.4
1,627,050	-		EFB2_01554	0.26	+1.2
1,627,050	-		EFB2_01554	0.26	-0.4
1,627,050	-		EFB2_01554	0.26	+1.0
1,627,050	-		EFB2_01554	0.26	-1.7
1,627,050	-		EFB2_01554	0.26	+0.2
1,627,088	+		EFB2_01554	0.30	-1.5
1,627,089	-		EFB2_01554	0.31	-0.7
1,627,100	+		EFB2_01554	0.32	+1.2
1,627,101	-		EFB2_01554	0.32	-0.7
1,627,109	+		EFB2_01554	0.33	-0.9
1,627,109	+		EFB2_01554	0.33	+0.1
1,627,110	-		EFB2_01554	0.33	-0.5
1,627,110	-		EFB2_01554	0.33	-1.4
1,627,110	-		EFB2_01554	0.33	+0.7
1,627,126	+		EFB2_01554	0.35	+0.6
1,627,126	+		EFB2_01554	0.35	-2.3
1,627,194	-		EFB2_01554	0.42	+1.6
1,627,215	+		EFB2_01554	0.45	+1.0
1,627,296	-		EFB2_01554	0.54	+2.8
1,627,296	-		EFB2_01554	0.54	-2.4
1,627,296	-		EFB2_01554	0.54	+1.0
1,627,296	-		EFB2_01554	0.54	-0.3
1,627,296	-		EFB2_01554	0.54	+1.5
1,627,301	+		EFB2_01554	0.54	+0.3
1,627,302	-		EFB2_01554	0.54	+0.7
1,627,311	-		EFB2_01554	0.55	-0.1
1,627,347	+		EFB2_01554	0.59	+0.8
1,627,347	+		EFB2_01554	0.59	-0.7
1,627,347	+		EFB2_01554	0.59	-0.6
1,627,347	+		EFB2_01554	0.59	-1.7
1,627,347	+		EFB2_01554	0.59	-0.4
1,627,347	+		EFB2_01554	0.59	-1.7
1,627,348	-		EFB2_01554	0.60	+0.3
1,627,348	-		EFB2_01554	0.60	+0.2
1,627,348	-		EFB2_01554	0.60	+1.2
1,627,348	-		EFB2_01554	0.60	-1.1
1,627,348	-		EFB2_01554	0.60	+0.1
1,627,348	-		EFB2_01554	0.60	-0.9
1,627,348	-		EFB2_01554	0.60	+0.7
1,627,357	+		EFB2_01554	0.61	+0.2
1,627,357	+		EFB2_01554	0.61	-1.5
1,627,358	-		EFB2_01554	0.61	+0.5
1,627,358	-		EFB2_01554	0.61	-0.4
1,627,358	-		EFB2_01554	0.61	-0.4
1,627,358	-		EFB2_01554	0.61	+0.1
1,627,360	+		EFB2_01554	0.61	+1.1
1,627,360	+		EFB2_01554	0.61	+0.6
1,627,360	+		EFB2_01554	0.61	+0.7
1,627,360	+		EFB2_01554	0.61	+0.9
1,627,360	+		EFB2_01554	0.61	-1.7
1,627,360	+		EFB2_01554	0.61	-2.9
1,627,361	-		EFB2_01554	0.61	-0.5
1,627,361	-		EFB2_01554	0.61	-0.3
1,627,361	-		EFB2_01554	0.61	-0.8
1,627,439	+		EFB2_01554	0.70	+1.0
1,627,440	-		EFB2_01554	0.70	+0.1
1,627,440	-		EFB2_01554	0.70	-2.0
1,627,569	+		EFB2_01554	0.84	-1.0
1,627,569	+		EFB2_01554	0.84	-0.7
1,627,570	-		EFB2_01554	0.84	+0.2
1,627,614	-		EFB2_01554	0.89	+0.0
1,627,677	+				+0.7
1,627,677	+				+1.4
1,627,677	+				+0.1
1,627,678	-				-3.1
1,627,678	-				-1.3
1,627,701	+				-0.4
1,627,701	+				+1.1
1,627,701	+				-0.6
1,627,701	+				-0.0
1,627,701	+				-0.5
1,627,701	+				+0.7
1,627,701	+				+3.3
1,627,701	+				-0.1
1,627,702	-				-1.1
1,627,702	-				+0.5
1,627,702	-				-0.1
1,627,702	-				+2.2
1,627,702	-				+0.3
1,627,702	-				-1.9
1,627,702	-				-1.4
1,627,702	-				-0.7
1,627,702	-				-0.2
1,627,702	-				-0.5
1,627,702	-				-0.6
1,627,702	-				-0.4
1,627,702	-				+0.3
1,627,702	-				-0.3
1,627,702	-				+0.9
1,627,723	-				-2.6
1,627,745	+				+0.2
1,627,745	+				-1.5
1,627,746	-				+1.5
1,627,746	-				-0.1
1,627,746	-				-1.5
1,627,746	-				+1.5
1,627,746	-				-1.7
1,627,809	+		EFB2_01555	0.22	+0.1
1,627,809	+		EFB2_01555	0.22	+0.1
1,627,809	+		EFB2_01555	0.22	-0.4
1,627,809	+		EFB2_01555	0.22	-0.8
1,627,809	+		EFB2_01555	0.22	-2.6
1,627,809	+		EFB2_01555	0.22	+0.2
1,627,809	+		EFB2_01555	0.22	-1.2
1,627,809	+		EFB2_01555	0.22	-2.2
1,627,809	+		EFB2_01555	0.22	+0.4
1,627,809	+		EFB2_01555	0.22	+0.9
1,627,809	+		EFB2_01555	0.22	-0.5
1,627,809	+		EFB2_01555	0.22	-0.2
1,627,809	+		EFB2_01555	0.22	-1.1
1,627,809	+		EFB2_01555	0.22	-0.4
1,627,809	+		EFB2_01555	0.22	+0.5
1,627,810	-		EFB2_01555	0.22	-2.1
1,627,810	-		EFB2_01555	0.22	-0.3
1,627,810	-		EFB2_01555	0.22	-0.2
1,627,810	-		EFB2_01555	0.22	-0.7
1,627,810	-		EFB2_01555	0.22	+1.2
1,627,810	-		EFB2_01555	0.22	+0.1
1,627,810	-		EFB2_01555	0.22	-0.0
1,627,810	-		EFB2_01555	0.22	-0.3
1,627,810	-		EFB2_01555	0.22	-0.2
1,627,810	-		EFB2_01555	0.22	-1.5
1,627,810	-		EFB2_01555	0.22	-0.6
1,627,810	-		EFB2_01555	0.22	-0.1
1,627,882	+		EFB2_01555	0.42	-0.4
1,627,883	-		EFB2_01555	0.42	-2.4
1,627,883	-		EFB2_01555	0.42	-0.8
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