Strain Fitness in Escherichia fergusonii Becca around EFB2_01099

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,149,698	+		EFB2_01098	0.35	+0.0
1,149,698	+		EFB2_01098	0.35	+1.4
1,149,698	+		EFB2_01098	0.35	-2.8
1,149,698	+		EFB2_01098	0.35	-1.0
1,149,698	+		EFB2_01098	0.35	-1.1
1,149,699	-		EFB2_01098	0.35	+0.1
1,149,699	-		EFB2_01098	0.35	-0.3
1,149,699	-		EFB2_01098	0.35	+0.3
1,149,699	-		EFB2_01098	0.35	+1.5
1,149,699	-		EFB2_01098	0.35	-0.7
1,149,699	-		EFB2_01098	0.35	+0.3
1,149,721	-		EFB2_01098	0.37	-1.2
1,149,721	-		EFB2_01098	0.37	+1.6
1,149,721	-		EFB2_01098	0.37	-1.0
1,149,891	+		EFB2_01098	0.50	+0.2
1,149,891	+		EFB2_01098	0.50	-0.4
1,149,891	+		EFB2_01098	0.50	-0.6
1,149,892	-		EFB2_01098	0.50	+2.4
1,149,892	-		EFB2_01098	0.50	-2.0
1,149,943	+		EFB2_01098	0.54	+0.0
1,149,944	-		EFB2_01098	0.54	-0.3
1,149,973	+		EFB2_01098	0.56	-1.1
1,149,973	+		EFB2_01098	0.56	-0.2
1,149,973	+		EFB2_01098	0.56	+1.1
1,149,974	-		EFB2_01098	0.56	-2.9
1,150,014	+		EFB2_01098	0.59	+0.4
1,150,014	+		EFB2_01098	0.59	-0.3
1,150,014	+		EFB2_01098	0.59	-0.4
1,150,014	+		EFB2_01098	0.59	-0.1
1,150,015	-		EFB2_01098	0.59	+0.3
1,150,015	-		EFB2_01098	0.59	+0.2
1,150,015	-		EFB2_01098	0.59	-1.6
1,150,015	-		EFB2_01098	0.59	+0.7
1,150,016	+		EFB2_01098	0.59	-2.4
1,150,016	+		EFB2_01098	0.59	-0.8
1,150,016	+		EFB2_01098	0.59	-0.7
1,150,016	+		EFB2_01098	0.59	+0.5
1,150,016	+		EFB2_01098	0.59	-1.1
1,150,016	+		EFB2_01098	0.59	+0.7
1,150,016	+		EFB2_01098	0.59	-2.4
1,150,016	+		EFB2_01098	0.59	-0.6
1,150,016	+		EFB2_01098	0.59	-3.0
1,150,016	+		EFB2_01098	0.59	+0.4
1,150,016	+		EFB2_01098	0.59	+0.8
1,150,016	+		EFB2_01098	0.59	-0.5
1,150,016	+		EFB2_01098	0.59	+0.4
1,150,016	+		EFB2_01098	0.59	-1.4
1,150,016	+		EFB2_01098	0.59	-2.3
1,150,016	+		EFB2_01098	0.59	-1.5
1,150,016	+		EFB2_01098	0.59	+1.5
1,150,016	+		EFB2_01098	0.59	-0.3
1,150,016	+		EFB2_01098	0.59	+0.1
1,150,016	+		EFB2_01098	0.59	-0.5
1,150,016	+		EFB2_01098	0.59	+0.8
1,150,016	+		EFB2_01098	0.59	+0.0
1,150,016	+		EFB2_01098	0.59	-2.5
1,150,016	+		EFB2_01098	0.59	-2.8
1,150,016	+		EFB2_01098	0.59	-1.3
1,150,016	+		EFB2_01098	0.59	+0.1
1,150,016	+		EFB2_01098	0.59	+0.6
1,150,016	+		EFB2_01098	0.59	-1.4
1,150,016	+		EFB2_01098	0.59	-0.7
1,150,016	+		EFB2_01098	0.59	+0.4
1,150,016	+		EFB2_01098	0.59	+0.5
1,150,016	+		EFB2_01098	0.59	-0.5
1,150,016	+		EFB2_01098	0.59	-1.6
1,150,016	+		EFB2_01098	0.59	+2.4
1,150,016	+		EFB2_01098	0.59	-0.7
1,150,016	+		EFB2_01098	0.59	+0.5
1,150,016	+		EFB2_01098	0.59	-0.6
1,150,016	+		EFB2_01098	0.59	-0.2
1,150,017	-		EFB2_01098	0.59	+0.2
1,150,017	-		EFB2_01098	0.59	-0.6
1,150,017	-		EFB2_01098	0.59	-1.4
1,150,017	-		EFB2_01098	0.59	+0.1
1,150,017	-		EFB2_01098	0.59	+1.5
1,150,017	-		EFB2_01098	0.59	-1.1
1,150,017	-		EFB2_01098	0.59	-0.3
1,150,017	-		EFB2_01098	0.59	+1.5
1,150,017	-		EFB2_01098	0.59	+0.7
1,150,017	-		EFB2_01098	0.59	+2.3
1,150,017	-		EFB2_01098	0.59	-0.4
1,150,017	-		EFB2_01098	0.59	+0.1
1,150,017	-		EFB2_01098	0.59	-0.1
1,150,017	-		EFB2_01098	0.59	-1.2
1,150,017	-		EFB2_01098	0.59	-0.2
1,150,017	-		EFB2_01098	0.59	-1.4
1,150,017	-		EFB2_01098	0.59	+1.6
1,150,017	-		EFB2_01098	0.59	+2.8
1,150,017	-		EFB2_01098	0.59	+0.0
1,150,017	-		EFB2_01098	0.59	+0.7
1,150,017	-		EFB2_01098	0.59	-1.1
1,150,017	-		EFB2_01098	0.59	-0.9
1,150,017	-		EFB2_01098	0.59	-1.6
1,150,017	-		EFB2_01098	0.59	+0.8
1,150,017	-		EFB2_01098	0.59	+1.8
1,150,017	-		EFB2_01098	0.59	+0.2
1,150,017	-		EFB2_01098	0.59	-1.2
1,150,017	-		EFB2_01098	0.59	-1.1
1,150,017	-		EFB2_01098	0.59	-0.1
1,150,017	-		EFB2_01098	0.59	+0.3
1,150,017	-		EFB2_01098	0.59	-0.6
1,150,017	-		EFB2_01098	0.59	-0.1
1,150,017	-		EFB2_01098	0.59	-1.5
1,150,017	-		EFB2_01098	0.59	+0.1
1,150,017	-		EFB2_01098	0.59	-1.6
1,150,017	-		EFB2_01098	0.59	+0.5
1,150,017	-		EFB2_01098	0.59	-0.3
1,150,017	-		EFB2_01098	0.59	+0.5
1,150,082	+		EFB2_01098	0.64	-2.7
1,150,082	+		EFB2_01098	0.64	-0.7
1,150,082	+		EFB2_01098	0.64	-0.1
1,150,082	+		EFB2_01098	0.64	+0.0
1,150,082	+		EFB2_01098	0.64	-1.1
1,150,082	+		EFB2_01098	0.64	-0.7
1,150,082	+		EFB2_01098	0.64	+0.1
1,150,082	+		EFB2_01098	0.64	+1.4
1,150,082	+		EFB2_01098	0.64	+0.5
1,150,082	+		EFB2_01098	0.64	-0.6
1,150,082	+		EFB2_01098	0.64	-2.6
1,150,082	+		EFB2_01098	0.64	+0.8
1,150,082	+		EFB2_01098	0.64	-1.8
1,150,083	-		EFB2_01098	0.64	-1.6
1,150,083	-		EFB2_01098	0.64	-0.7
1,150,083	-		EFB2_01098	0.64	-0.2
1,150,083	-		EFB2_01098	0.64	-0.6
1,150,083	-		EFB2_01098	0.64	+1.9
1,150,083	-		EFB2_01098	0.64	-0.1
1,150,083	-		EFB2_01098	0.64	+0.1
1,150,083	-		EFB2_01098	0.64	-0.0
1,150,096	-		EFB2_01098	0.65	+0.3
1,150,096	-		EFB2_01098	0.65	-0.6
1,150,140	+		EFB2_01098	0.68	+0.2
1,150,140	+		EFB2_01098	0.68	+1.3
1,150,140	+		EFB2_01098	0.68	-0.5
1,150,140	+		EFB2_01098	0.68	+1.5
1,150,140	+		EFB2_01098	0.68	+1.9
1,150,140	+		EFB2_01098	0.68	-2.7
1,150,140	+		EFB2_01098	0.68	+0.2
1,150,140	+		EFB2_01098	0.68	-1.5
1,150,160	+		EFB2_01098	0.70	+0.5
1,150,160	+		EFB2_01098	0.70	+0.2
1,150,160	+		EFB2_01098	0.70	+1.9
1,150,160	+		EFB2_01098	0.70	+0.1
1,150,160	+		EFB2_01098	0.70	-2.0
1,150,160	+		EFB2_01098	0.70	-0.7
1,150,161	-		EFB2_01098	0.70	-1.0
1,150,161	-		EFB2_01098	0.70	+0.9
1,150,161	-		EFB2_01098	0.70	+0.4
1,150,161	-		EFB2_01098	0.70	-0.2
1,150,161	-		EFB2_01098	0.70	+1.7
1,150,161	-		EFB2_01098	0.70	+0.8
1,150,161	-		EFB2_01098	0.70	+0.1
1,150,161	-		EFB2_01098	0.70	+1.4
1,150,161	-		EFB2_01098	0.70	-2.0
1,150,161	-		EFB2_01098	0.70	-0.9
1,150,164	+		EFB2_01098	0.70	+0.3
1,150,164	+		EFB2_01098	0.70	-0.9
1,150,164	+		EFB2_01098	0.70	-2.0
1,150,164	+		EFB2_01098	0.70	+1.1
1,150,165	-		EFB2_01098	0.70	+0.7
1,150,165	-		EFB2_01098	0.70	+2.9
1,150,165	-		EFB2_01098	0.70	-0.0
1,150,165	-		EFB2_01098	0.70	-0.7
1,150,165	-		EFB2_01098	0.70	-0.9
1,150,372	+		EFB2_01098	0.86	+0.1
1,150,372	+		EFB2_01098	0.86	+0.3
1,150,372	+		EFB2_01098	0.86	-1.2
1,150,372	+		EFB2_01098	0.86	+0.1
1,150,372	+		EFB2_01098	0.86	+0.3
1,150,372	+		EFB2_01098	0.86	+0.8
1,150,373	-		EFB2_01098	0.86	+0.5
1,150,373	-		EFB2_01098	0.86	-0.7
1,150,452	+				+0.6
1,150,452	+				+0.0
1,150,452	+				-0.3
1,150,452	+				+3.7
1,150,452	+				+0.3
1,150,453	-				-0.7
1,150,453	-				-1.0
1,150,453	-				-0.5
1,150,467	+				+1.5
1,150,467	+				-0.4
1,150,467	+				-0.2
1,150,467	+				+0.1
1,150,467	+				+0.5
1,150,467	+				-1.0
1,150,467	+				+3.1
1,150,467	+				+1.7
1,150,467	+				+1.4
1,150,468	-				-0.9
1,150,468	-				+0.6
1,150,468	-				-0.1
1,150,468	-				+1.0
1,150,563	+				-0.6
1,150,625	+				-0.7
1,150,697	+				-0.0
1,150,697	+				-0.6
1,150,698	-				-0.3
1,150,698	-				-0.4
1,150,698	-				-0.2
1,150,698	-				+0.5
1,150,698	-				+0.3
1,150,813	-		EFB2_01099	0.15	+0.1
1,150,838	+		EFB2_01099	0.17	+0.5
1,150,864	+		EFB2_01099	0.18	+0.8
1,150,865	-		EFB2_01099	0.18	-0.0
1,150,865	-		EFB2_01099	0.18	-0.2
1,150,894	+		EFB2_01099	0.20	+0.2
1,150,894	+		EFB2_01099	0.20	-1.2
1,150,894	+		EFB2_01099	0.20	+0.3
1,150,894	+		EFB2_01099	0.20	+0.0
1,150,894	+		EFB2_01099	0.20	+0.0
1,150,895	-		EFB2_01099	0.20	+2.6
1,150,895	-		EFB2_01099	0.20	+1.9
1,150,895	-		EFB2_01099	0.20	-1.1
1,150,895	-		EFB2_01099	0.20	-0.1
1,150,895	-		EFB2_01099	0.20	+2.1
1,150,895	-		EFB2_01099	0.20	-0.8
1,150,895	-		EFB2_01099	0.20	+0.7
1,150,895	-		EFB2_01099	0.20	+0.9
1,150,895	-		EFB2_01099	0.20	+0.5
1,150,895	-		EFB2_01099	0.20	-2.6
1,150,895	-		EFB2_01099	0.20	-0.2
1,150,911	-		EFB2_01099	0.21	-0.5
1,150,913	+		EFB2_01099	0.22	+0.4
1,150,913	+		EFB2_01099	0.22	+0.3
1,150,914	-		EFB2_01099	0.22	-0.2
1,150,914	-		EFB2_01099	0.22	-0.8
1,150,914	-		EFB2_01099	0.22	-0.4
1,150,914	-		EFB2_01099	0.22	-0.0
1,150,914	-		EFB2_01099	0.22	-2.1
1,150,914	-		EFB2_01099	0.22	-0.9
1,150,941	-		EFB2_01099	0.23	-0.7
1,150,945	+		EFB2_01099	0.24	-0.9
1,150,945	+		EFB2_01099	0.24	-1.2
1,150,945	+		EFB2_01099	0.24	+0.1
1,150,945	+		EFB2_01099	0.24	-0.1
1,150,945	+		EFB2_01099	0.24	-0.1
1,150,945	+		EFB2_01099	0.24	+0.6
1,150,945	+		EFB2_01099	0.24	-0.1
1,150,945	+		EFB2_01099	0.24	+0.3
1,150,945	+		EFB2_01099	0.24	-0.9
1,150,945	+		EFB2_01099	0.24	+0.7
1,150,945	+		EFB2_01099	0.24	-0.1
1,150,945	+		EFB2_01099	0.24	-1.6
1,150,945	+		EFB2_01099	0.24	-0.8
1,150,945	+		EFB2_01099	0.24	-0.7
1,150,945	+		EFB2_01099	0.24	-0.3
1,150,945	+		EFB2_01099	0.24	-2.6
1,150,945	+		EFB2_01099	0.24	-1.8
1,150,945	+		EFB2_01099	0.24	+0.7
1,150,945	+		EFB2_01099	0.24	+1.1
1,150,945	+		EFB2_01099	0.24	-3.5
1,150,945	+		EFB2_01099	0.24	+1.1
1,150,945	+		EFB2_01099	0.24	+0.6
1,150,945	+		EFB2_01099	0.24	+0.3
1,150,945	+		EFB2_01099	0.24	+1.2
1,150,946	-		EFB2_01099	0.24	+0.9
1,150,946	-		EFB2_01099	0.24	-0.8
1,150,946	-		EFB2_01099	0.24	+0.7
1,150,946	-		EFB2_01099	0.24	-0.0
1,150,946	-		EFB2_01099	0.24	-0.3
1,150,946	-		EFB2_01099	0.24	-2.5
1,150,946	-		EFB2_01099	0.24	+0.7
1,150,946	-		EFB2_01099	0.24	+0.0
1,150,946	-		EFB2_01099	0.24	-1.2
1,150,946	-		EFB2_01099	0.24	+0.1
1,150,946	-		EFB2_01099	0.24	-0.9
1,150,946	-		EFB2_01099	0.24	+0.7
1,150,946	-		EFB2_01099	0.24	-1.7
1,150,946	-		EFB2_01099	0.24	-3.2
1,150,946	-		EFB2_01099	0.24	-3.8
1,150,946	-		EFB2_01099	0.24	-0.3
1,150,946	-		EFB2_01099	0.24	-0.2
1,150,946	-		EFB2_01099	0.24	-0.5
1,150,991	-		EFB2_01099	0.27	+2.0
1,150,991	-		EFB2_01099	0.27	-0.9
1,151,003	+		EFB2_01099	0.27	-0.3
1,151,003	+		EFB2_01099	0.27	-0.9
1,151,003	+		EFB2_01099	0.27	-0.3
1,151,004	-		EFB2_01099	0.27	+0.1
1,151,004	-		EFB2_01099	0.27	-1.5
1,151,004	-		EFB2_01099	0.27	-1.9
1,151,004	-		EFB2_01099	0.27	-1.0
1,151,004	-		EFB2_01099	0.27	-1.3
1,151,004	-		EFB2_01099	0.27	-3.0
1,151,005	+		EFB2_01099	0.28	-1.0
1,151,005	+		EFB2_01099	0.28	+2.1
1,151,005	+		EFB2_01099	0.28	+0.4
1,151,005	+		EFB2_01099	0.28	+0.0
1,151,006	-		EFB2_01099	0.28	-0.1
1,151,006	-		EFB2_01099	0.28	-1.3
1,151,006	-		EFB2_01099	0.28	-1.6
1,151,006	-		EFB2_01099	0.28	-1.0
1,151,008	+		EFB2_01099	0.28	-0.6
1,151,008	+		EFB2_01099	0.28	+0.4
1,151,008	+		EFB2_01099	0.28	+0.5
1,151,008	+		EFB2_01099	0.28	-2.3
1,151,008	+		EFB2_01099	0.28	+0.4
1,151,008	+		EFB2_01099	0.28	-1.3
1,151,008	+		EFB2_01099	0.28	+1.6
1,151,008	+		EFB2_01099	0.28	+0.7
1,151,008	+		EFB2_01099	0.28	-2.1
1,151,008	+		EFB2_01099	0.28	-0.6
1,151,009	-		EFB2_01099	0.28	-1.3
1,151,009	-		EFB2_01099	0.28	-3.4
1,151,009	-		EFB2_01099	0.28	+0.2
1,151,009	-		EFB2_01099	0.28	-0.0
1,151,009	-		EFB2_01099	0.28	-0.9
1,151,009	-		EFB2_01099	0.28	+1.3
1,151,021	+		EFB2_01099	0.29	-1.0
1,151,110	+		EFB2_01099	0.34	-0.8
1,151,111	-		EFB2_01099	0.34	+1.8
1,151,133	+		EFB2_01099	0.36	-3.3
1,151,134	-		EFB2_01099	0.36	-2.5
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