Strain Fitness in Escherichia fergusonii Becca around EFB2_00831

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
844,977	+		EFB2_00829	0.39	-1.4
844,977	+		EFB2_00829	0.39	+0.7
844,978	-		EFB2_00829	0.39	+0.6
844,978	-		EFB2_00829	0.39	+0.2
844,978	-		EFB2_00829	0.39	-0.6
844,986	+		EFB2_00829	0.39	+0.1
844,987	-		EFB2_00829	0.39	+0.5
844,987	-		EFB2_00829	0.39	+0.1
844,987	-		EFB2_00829	0.39	+0.2
844,989	+		EFB2_00829	0.40	+1.5
844,989	+		EFB2_00829	0.40	-1.2
844,990	-		EFB2_00829	0.40	-1.9
845,045	-		EFB2_00829	0.44	-1.0
845,081	+		EFB2_00829	0.47	-0.2
845,081	+		EFB2_00829	0.47	+1.8
845,081	+		EFB2_00829	0.47	-2.8
845,081	+		EFB2_00829	0.47	-1.4
845,082	-		EFB2_00829	0.47	+0.5
845,103	+		EFB2_00829	0.49	-0.4
845,103	+		EFB2_00829	0.49	-1.1
845,142	+		EFB2_00829	0.53	-0.8
845,142	+		EFB2_00829	0.53	-0.9
845,142	+		EFB2_00829	0.53	-2.7
845,142	+		EFB2_00829	0.53	+1.0
845,142	+		EFB2_00829	0.53	+0.2
845,142	+		EFB2_00829	0.53	+0.8
845,142	+		EFB2_00829	0.53	+0.7
845,142	+		EFB2_00829	0.53	+0.2
845,142	+		EFB2_00829	0.53	+0.2
845,142	+		EFB2_00829	0.53	-0.9
845,142	+		EFB2_00829	0.53	+0.2
845,143	-		EFB2_00829	0.53	-0.1
845,143	-		EFB2_00829	0.53	+0.7
845,143	-		EFB2_00829	0.53	-2.1
845,143	-		EFB2_00829	0.53	+0.1
845,143	-		EFB2_00829	0.53	+0.6
845,143	-		EFB2_00829	0.53	-0.6
845,143	-		EFB2_00829	0.53	-0.5
845,143	-		EFB2_00829	0.53	-0.3
845,143	-		EFB2_00829	0.53	-0.6
845,143	-		EFB2_00829	0.53	+1.1
845,143	-		EFB2_00829	0.53	-1.8
845,143	-		EFB2_00829	0.53	+0.2
845,143	-		EFB2_00829	0.53	-0.2
845,143	-		EFB2_00829	0.53	-0.2
845,147	+		EFB2_00829	0.53	-3.0
845,147	+		EFB2_00829	0.53	-0.5
845,147	+		EFB2_00829	0.53	-0.0
845,147	+		EFB2_00829	0.53	-1.6
845,147	+		EFB2_00829	0.53	+0.2
845,147	+		EFB2_00829	0.53	+1.1
845,147	+		EFB2_00829	0.53	+0.1
845,147	+		EFB2_00829	0.53	-0.5
845,147	+		EFB2_00829	0.53	+1.9
845,147	+		EFB2_00829	0.53	-1.1
845,147	+		EFB2_00829	0.53	+0.3
845,147	+		EFB2_00829	0.53	-1.0
845,147	+		EFB2_00829	0.53	-0.6
845,147	+		EFB2_00829	0.53	+1.8
845,147	+		EFB2_00829	0.53	-1.4
845,147	+		EFB2_00829	0.53	-1.4
845,147	+		EFB2_00829	0.53	+0.4
845,147	+		EFB2_00829	0.53	+1.1
845,147	+		EFB2_00829	0.53	-1.9
845,147	+		EFB2_00829	0.53	+2.3
845,147	+		EFB2_00829	0.53	+0.5
845,147	+		EFB2_00829	0.53	-1.2
845,147	+		EFB2_00829	0.53	+0.3
845,147	+		EFB2_00829	0.53	-2.0
845,147	+		EFB2_00829	0.53	+0.7
845,147	+		EFB2_00829	0.53	+0.1
845,147	+		EFB2_00829	0.53	+0.5
845,147	+		EFB2_00829	0.53	+0.9
845,147	+		EFB2_00829	0.53	+3.9
845,147	+		EFB2_00829	0.53	-1.7
845,147	+		EFB2_00829	0.53	+0.8
845,147	+		EFB2_00829	0.53	+0.6
845,147	+		EFB2_00829	0.53	+0.6
845,148	-		EFB2_00829	0.53	+0.1
845,148	-		EFB2_00829	0.53	-0.6
845,148	-		EFB2_00829	0.53	-0.3
845,148	-		EFB2_00829	0.53	+0.1
845,148	-		EFB2_00829	0.53	+0.8
845,148	-		EFB2_00829	0.53	-1.4
845,148	-		EFB2_00829	0.53	-0.4
845,148	-		EFB2_00829	0.53	-0.4
845,148	-		EFB2_00829	0.53	-0.0
845,148	-		EFB2_00829	0.53	+0.7
845,148	-		EFB2_00829	0.53	+1.5
845,148	-		EFB2_00829	0.53	-1.6
845,148	-		EFB2_00829	0.53	+0.1
845,148	-		EFB2_00829	0.53	-0.1
845,148	-		EFB2_00829	0.53	+0.4
845,148	-		EFB2_00829	0.53	-0.2
845,148	-		EFB2_00829	0.53	+2.8
845,148	-		EFB2_00829	0.53	+2.1
845,148	-		EFB2_00829	0.53	-1.1
845,148	-		EFB2_00829	0.53	+0.3
845,148	-		EFB2_00829	0.53	-0.5
845,148	-		EFB2_00829	0.53	-0.6
845,148	-		EFB2_00829	0.53	-0.8
845,148	-		EFB2_00829	0.53	-4.5
845,148	-		EFB2_00829	0.53	+0.5
845,148	-		EFB2_00829	0.53	+0.4
845,148	-		EFB2_00829	0.53	+1.3
845,148	-		EFB2_00829	0.53	-0.7
845,148	-		EFB2_00829	0.53	-0.9
845,148	-		EFB2_00829	0.53	+0.0
845,148	-		EFB2_00829	0.53	-0.1
845,148	-		EFB2_00829	0.53	-0.4
845,148	-		EFB2_00829	0.53	-1.2
845,166	+		EFB2_00829	0.55	+0.5
845,166	+		EFB2_00829	0.55	+0.6
845,166	+		EFB2_00829	0.55	-0.7
845,166	+		EFB2_00829	0.55	+0.6
845,166	+		EFB2_00829	0.55	+0.2
845,167	-		EFB2_00829	0.55	-0.3
845,167	-		EFB2_00829	0.55	-0.0
845,230	-		EFB2_00829	0.60	+0.3
845,245	-		EFB2_00829	0.61	+0.8
845,276	+		EFB2_00829	0.64	-1.5
845,277	-		EFB2_00829	0.64	+0.1
845,277	-		EFB2_00829	0.64	+0.8
845,277	-		EFB2_00829	0.64	+0.4
845,277	-		EFB2_00829	0.64	-0.8
845,280	+		EFB2_00829	0.64	-0.2
845,280	+		EFB2_00829	0.64	-1.1
845,280	+		EFB2_00829	0.64	+0.5
845,280	+		EFB2_00829	0.64	+0.3
845,281	-		EFB2_00829	0.64	-3.7
845,281	-		EFB2_00829	0.64	+0.5
845,281	-		EFB2_00829	0.64	+0.2
845,305	+		EFB2_00829	0.66	+0.1
845,305	+		EFB2_00829	0.66	+1.5
845,306	-		EFB2_00829	0.67	+0.9
845,306	-		EFB2_00829	0.67	-2.0
845,319	+		EFB2_00829	0.68	-0.2
845,319	+		EFB2_00829	0.68	+2.1
845,320	-		EFB2_00829	0.68	-1.7
845,347	+		EFB2_00829	0.70	-0.1
845,347	+		EFB2_00829	0.70	-1.8
845,347	+		EFB2_00829	0.70	+0.1
845,358	+		EFB2_00829	0.71	+0.9
845,358	+		EFB2_00829	0.71	+0.7
845,358	+		EFB2_00829	0.71	+0.2
845,358	+		EFB2_00829	0.71	-0.7
845,359	-		EFB2_00829	0.71	-0.4
845,360	+		EFB2_00829	0.71	+0.1
845,360	+		EFB2_00829	0.71	+1.5
845,361	-		EFB2_00829	0.71	+0.2
845,361	-		EFB2_00829	0.71	-1.4
845,361	-		EFB2_00829	0.71	-0.8
845,438	+		EFB2_00829	0.78	+0.4
845,438	+		EFB2_00829	0.78	+1.1
845,439	-		EFB2_00829	0.78	-0.2
845,439	-		EFB2_00829	0.78	-0.7
845,439	-		EFB2_00829	0.78	-0.2
845,439	-		EFB2_00829	0.78	+1.3
845,439	-		EFB2_00829	0.78	-1.7
845,449	-		EFB2_00829	0.79	+0.0
845,454	+		EFB2_00829	0.79	-0.1
845,454	+		EFB2_00829	0.79	-0.3
845,454	+		EFB2_00829	0.79	+3.3
845,524	-		EFB2_00829	0.85	+1.3
845,531	-		EFB2_00829	0.86	+0.9
845,531	-		EFB2_00829	0.86	+1.6
845,540	+		EFB2_00829	0.87	-2.0
845,540	+		EFB2_00829	0.87	+0.3
845,541	-		EFB2_00829	0.87	+1.4
845,541	-		EFB2_00829	0.87	-0.6
845,541	-		EFB2_00829	0.87	+0.2
845,541	-		EFB2_00829	0.87	+0.3
845,544	+		EFB2_00829	0.87	+0.4
845,544	+		EFB2_00829	0.87	-0.1
845,544	+		EFB2_00829	0.87	-1.1
845,544	+		EFB2_00829	0.87	+0.0
845,544	+		EFB2_00829	0.87	+0.6
845,545	-		EFB2_00829	0.87	-1.1
845,545	-		EFB2_00829	0.87	+1.7
845,545	-		EFB2_00829	0.87	-2.1
845,545	-		EFB2_00829	0.87	+0.0
845,545	-		EFB2_00829	0.87	+1.5
845,545	-		EFB2_00829	0.87	+0.5
845,545	-		EFB2_00829	0.87	-1.3
845,601	-				-0.4
845,601	-				+0.5
845,601	-				-0.6
845,601	-				+0.5
845,601	-				+1.1
845,601	-				+1.2
845,601	-				-0.7
845,601	-				-0.1
845,601	-				+0.6
845,613	+				+0.2
845,613	+				+0.5
845,613	+				+0.6
845,613	+				+2.0
845,614	-				-2.3
845,614	-				-0.9
845,614	-				-1.3
845,614	-				-0.8
845,646	+				-2.3
845,647	-				-0.7
845,678	+				+0.3
845,678	+				-1.5
845,678	+				-2.5
845,678	+				+0.3
845,678	+				-1.8
845,678	+				-0.7
845,678	+				-1.2
845,679	-				-0.3
845,679	-				-0.8
845,679	-				+0.2
845,679	-				+0.3
845,679	-				-0.3
845,679	-				-0.5
845,679	-				-2.8
845,679	-				+1.4
845,682	+				-2.1
845,682	+				+0.4
845,683	-				-2.1
845,683	-				-0.2
845,683	-				+0.8
845,683	-				-1.9
845,687	+				-1.8
845,687	+				-0.7
845,687	+				-0.1
845,688	-				+1.1
845,688	-				+0.3
845,688	-				+1.0
845,689	+				+0.1
845,690	-				-0.5
845,690	-				-0.9
845,690	-				-2.3
845,690	-				+0.2
845,690	-				+1.7
845,690	-				-1.1
845,690	-				-2.0
845,690	-				-1.5
845,698	+				+1.2
845,698	+				+0.8
845,698	+				-0.2
845,699	-				+1.2
845,699	-				-3.0
845,699	-				-2.7
845,699	-				+1.1
845,702	+				-0.1
845,717	+				-2.3
845,721	+				+1.1
845,721	+				-1.5
845,722	-		EFB2_00830	0.10	+0.4
845,722	-		EFB2_00830	0.10	+0.6
845,722	-		EFB2_00830	0.10	-0.9
845,722	-		EFB2_00830	0.10	-0.3
845,733	+		EFB2_00830	0.14	+0.9
845,734	-		EFB2_00830	0.15	-0.2
845,765	+		EFB2_00830	0.27	+1.3
845,765	+		EFB2_00830	0.27	+0.4
845,765	+		EFB2_00830	0.27	-1.1
845,765	+		EFB2_00830	0.27	+0.3
845,766	-		EFB2_00830	0.28	+1.6
845,768	+		EFB2_00830	0.29	-1.3
845,768	+		EFB2_00830	0.29	-0.7
845,768	+		EFB2_00830	0.29	+0.5
845,768	+		EFB2_00830	0.29	+0.2
845,768	+		EFB2_00830	0.29	-1.0
845,769	-		EFB2_00830	0.29	-3.1
845,771	+		EFB2_00830	0.30	-0.2
845,771	+		EFB2_00830	0.30	-0.8
845,771	+		EFB2_00830	0.30	-0.1
845,771	+		EFB2_00830	0.30	-1.6
845,771	+		EFB2_00830	0.30	-0.9
845,772	-		EFB2_00830	0.30	-0.0
845,808	+		EFB2_00830	0.45	+0.4
845,808	+		EFB2_00830	0.45	-0.7
845,808	+		EFB2_00830	0.45	-0.7
845,809	-		EFB2_00830	0.45	-0.2
845,809	-		EFB2_00830	0.45	-1.1
845,809	-		EFB2_00830	0.45	-0.3
845,870	+		EFB2_00830	0.69	-2.0
845,902	-		EFB2_00830	0.82	-0.0
845,917	+		EFB2_00830	0.88	-0.8
845,917	+		EFB2_00830	0.88	-1.2
845,917	+		EFB2_00830	0.88	-2.8
845,917	+		EFB2_00830	0.88	-2.0
845,917	+		EFB2_00830	0.88	-0.1
845,918	-		EFB2_00830	0.89	-0.5
845,918	-		EFB2_00830	0.89	+0.6
845,918	-		EFB2_00830	0.89	+1.3
845,918	-		EFB2_00830	0.89	-0.1
845,918	-		EFB2_00830	0.89	+0.3
845,918	-		EFB2_00830	0.89	+0.8
845,918	-		EFB2_00830	0.89	+1.1
845,918	-		EFB2_00830	0.89	-2.7
845,918	-		EFB2_00830	0.89	+0.3
845,918	-		EFB2_00830	0.89	-0.4
845,918	-		EFB2_00830	0.89	+0.8
845,918	-		EFB2_00830	0.89	+0.3
845,925	+				-0.8
845,925	+				+1.0
845,925	+				+0.5
845,928	+				-1.8
845,929	-				-0.4
845,940	+				-0.2
845,940	+				-1.6
845,946	-				-1.5
845,966	-				+2.2
845,966	-				+0.0
845,984	-				-0.2
845,996	-				+0.7
846,012	+				-3.4
846,013	-				-1.6
846,030	+				-2.1
846,030	+				-1.0
846,030	+				-1.1
846,030	+				-0.6
846,030	+				+0.5
846,030	+				-2.4
846,030	+				+0.2
846,031	-				-0.8
846,031	-				-0.2
846,031	-				+0.0
846,031	-				+2.1
846,031	-				+2.1
846,031	-				-1.8
846,033	+				-1.1
846,033	+				+0.0
846,034	-				-0.2
846,034	-				-2.8
846,034	-				-3.4
846,034	-				-3.3
846,045	+				-0.5
846,045	+				-1.6
846,045	+				+0.0
846,045	+				+0.2
846,046	-				+0.2
846,046	-				-1.2
846,046	-				-0.7
846,046	-				-1.1
846,046	-				-0.1
846,051	+				-0.6
846,052	-				-1.2
846,054	+				-1.6
846,054	+				+1.8
846,054	+				+2.4
846,054	+				+0.1
846,054	+				+0.6
846,054	+				-0.3
846,054	+				-1.9
846,054	+				+0.6
846,054	+				-0.9
846,054	+				-0.4
846,054	+				-0.6
846,055	-				+0.8
846,055	-				+0.2
846,055	-				-0.4
846,055	-				+0.2
846,079	+		EFB2_00831	0.11	-0.1
846,079	+		EFB2_00831	0.11	-2.8
846,108	+		EFB2_00831	0.14	-0.4
846,108	+		EFB2_00831	0.14	+0.1
846,108	+		EFB2_00831	0.14	-0.8
846,108	+		EFB2_00831	0.14	-0.6
846,108	+		EFB2_00831	0.14	-0.3
846,108	+		EFB2_00831	0.14	-0.0
846,108	+		EFB2_00831	0.14	+2.3
846,108	+		EFB2_00831	0.14	+0.3
846,108	+		EFB2_00831	0.14	+0.0
846,108	+		EFB2_00831	0.14	+0.7
846,109	-		EFB2_00831	0.14	-2.6
846,109	-		EFB2_00831	0.14	+3.1
846,109	-		EFB2_00831	0.14	-0.7
846,109	-		EFB2_00831	0.14	+1.4
846,109	-		EFB2_00831	0.14	-0.9
846,117	+		EFB2_00831	0.15	-0.7
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