Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05247

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05245 and BACOVA_05246 overlap by 8 nucleotidesBACOVA_05246 and BACOVA_05247 are separated by 18 nucleotidesBACOVA_05247 and BACOVA_05248 are separated by 72 nucleotidesBACOVA_05248 and BACOVA_05249 are separated by 14 nucleotides BACOVA_05245: BACOVA_05245 - 4Fe-4S binding domain protein, at 744,716 to 745,729 _05245 BACOVA_05246: BACOVA_05246 - oxidoreductase NAD-binding domain protein, at 745,722 to 746,564 _05246 BACOVA_05247: BACOVA_05247 - hypothetical protein, at 746,583 to 746,708 _05247 BACOVA_05248: BACOVA_05248 - hypothetical protein, at 746,781 to 747,242 _05248 BACOVA_05249: BACOVA_05249 - sodium ion-translocating decarboxylase, beta subunit, at 747,257 to 748,471 _05249 Position (kb) 746 747Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 745.603 kb on + strand, within BACOVA_05245at 745.604 kb on - strand, within BACOVA_05245at 745.613 kb on + strand, within BACOVA_05245at 745.614 kb on - strand, within BACOVA_05245at 745.615 kb on + strand, within BACOVA_05245at 745.616 kb on - strand, within BACOVA_05245at 745.685 kb on - strandat 745.685 kb on - strandat 745.690 kb on + strandat 745.692 kb on + strandat 745.692 kb on + strandat 745.693 kb on - strandat 745.704 kb on + strandat 745.705 kb on - strandat 745.742 kb on - strandat 745.743 kb on + strandat 745.743 kb on + strandat 745.744 kb on - strandat 745.744 kb on - strandat 745.872 kb on + strand, within BACOVA_05246at 745.935 kb on + strand, within BACOVA_05246at 745.937 kb on + strand, within BACOVA_05246at 745.946 kb on + strand, within BACOVA_05246at 745.946 kb on + strand, within BACOVA_05246at 746.087 kb on + strand, within BACOVA_05246at 746.090 kb on - strand, within BACOVA_05246at 746.090 kb on - strand, within BACOVA_05246at 746.153 kb on + strand, within BACOVA_05246at 746.153 kb on + strand, within BACOVA_05246at 746.155 kb on + strand, within BACOVA_05246at 746.156 kb on - strand, within BACOVA_05246at 746.198 kb on + strand, within BACOVA_05246at 746.199 kb on - strand, within BACOVA_05246at 746.199 kb on - strand, within BACOVA_05246at 746.250 kb on - strand, within BACOVA_05246at 746.250 kb on - strand, within BACOVA_05246at 746.342 kb on + strand, within BACOVA_05246at 746.343 kb on - strand, within BACOVA_05246at 746.354 kb on - strand, within BACOVA_05246at 746.396 kb on - strand, within BACOVA_05246at 746.408 kb on - strand, within BACOVA_05246at 746.431 kb on - strand, within BACOVA_05246at 746.433 kb on - strand, within BACOVA_05246at 746.483 kb on + strandat 746.522 kb on - strandat 746.546 kb on + strandat 746.546 kb on + strandat 746.547 kb on - strandat 746.547 kb on - strandat 746.562 kb on + strandat 746.563 kb on - strandat 746.563 kb on - strandat 746.618 kb on + strand, within BACOVA_05247at 746.639 kb on + strand, within BACOVA_05247at 746.639 kb on + strand, within BACOVA_05247at 746.641 kb on + strand, within BACOVA_05247at 746.643 kb on + strand, within BACOVA_05247at 746.643 kb on + strand, within BACOVA_05247at 746.644 kb on - strand, within BACOVA_05247at 746.666 kb on - strand, within BACOVA_05247at 746.687 kb on + strand, within BACOVA_05247at 746.725 kb on - strandat 746.733 kb on - strandat 746.733 kb on - strandat 746.780 kb on + strandat 746.789 kb on - strandat 746.802 kb on + strandat 746.805 kb on - strandat 746.810 kb on + strandat 746.810 kb on + strandat 746.811 kb on - strandat 746.822 kb on - strandat 746.822 kb on - strandat 746.825 kb on - strandat 746.831 kb on + strand, within BACOVA_05248at 746.832 kb on - strand, within BACOVA_05248at 746.888 kb on + strand, within BACOVA_05248at 746.926 kb on - strand, within BACOVA_05248at 746.927 kb on + strand, within BACOVA_05248at 747.008 kb on - strand, within BACOVA_05248at 747.011 kb on + strand, within BACOVA_05248at 747.011 kb on + strand, within BACOVA_05248at 747.011 kb on + strand, within BACOVA_05248at 747.011 kb on + strand, within BACOVA_05248at 747.012 kb on - strand, within BACOVA_05248at 747.051 kb on + strand, within BACOVA_05248at 747.094 kb on - strand, within BACOVA_05248at 747.096 kb on + strand, within BACOVA_05248at 747.096 kb on + strand, within BACOVA_05248at 747.134 kb on - strand, within BACOVA_05248at 747.141 kb on + strand, within BACOVA_05248at 747.141 kb on + strand, within BACOVA_05248at 747.144 kb on + strand, within BACOVA_05248at 747.144 kb on + strand, within BACOVA_05248at 747.145 kb on - strand, within BACOVA_05248at 747.228 kb on - strandat 747.228 kb on - strandat 747.240 kb on + strandat 747.241 kb on - strandat 747.251 kb on + strandat 747.252 kb on - strandat 747.292 kb on + strandat 747.292 kb on + strandat 747.299 kb on - strandat 747.372 kb on - strandat 747.388 kb on + strand, within BACOVA_05249at 747.401 kb on - strand, within BACOVA_05249at 747.432 kb on + strand, within BACOVA_05249at 747.436 kb on + strand, within BACOVA_05249at 747.437 kb on - strand, within BACOVA_05249at 747.437 kb on - strand, within BACOVA_05249at 747.520 kb on - strand, within BACOVA_05249at 747.537 kb on + strand, within BACOVA_05249at 747.571 kb on + strand, within BACOVA_05249at 747.574 kb on + strand, within BACOVA_05249at 747.574 kb on + strand, within BACOVA_05249at 747.585 kb on + strand, within BACOVA_05249at 747.602 kb on - strand, within BACOVA_05249at 747.659 kb on - strand, within BACOVA_05249

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
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745,603 + BACOVA_05245 0.87 -2.4
745,604 - BACOVA_05245 0.88 -0.4
745,613 + BACOVA_05245 0.88 -2.8
745,614 - BACOVA_05245 0.89 +2.2
745,615 + BACOVA_05245 0.89 -3.6
745,616 - BACOVA_05245 0.89 +1.2
745,685 - +1.3
745,685 - +1.0
745,690 + -2.1
745,692 + -3.3
745,692 + -1.7
745,693 - +0.3
745,704 + -2.8
745,705 - +0.2
745,742 - -0.2
745,743 + -3.1
745,743 + -2.1
745,744 - +0.1
745,744 - -0.5
745,872 + BACOVA_05246 0.18 -3.7
745,935 + BACOVA_05246 0.25 -2.8
745,937 + BACOVA_05246 0.26 -2.5
745,946 + BACOVA_05246 0.27 -0.4
745,946 + BACOVA_05246 0.27 -0.5
746,087 + BACOVA_05246 0.43 -1.8
746,090 - BACOVA_05246 0.44 -1.3
746,090 - BACOVA_05246 0.44 -0.8
746,153 + BACOVA_05246 0.51 -2.3
746,153 + BACOVA_05246 0.51 -3.6
746,155 + BACOVA_05246 0.51 -1.4
746,156 - BACOVA_05246 0.51 -0.5
746,198 + BACOVA_05246 0.56 -2.4
746,199 - BACOVA_05246 0.57 +1.1
746,199 - BACOVA_05246 0.57 +0.0
746,250 - BACOVA_05246 0.63 -0.1
746,250 - BACOVA_05246 0.63 +0.5
746,342 + BACOVA_05246 0.74 -1.2
746,343 - BACOVA_05246 0.74 -0.2
746,354 - BACOVA_05246 0.75 -0.5
746,396 - BACOVA_05246 0.80 +0.4
746,408 - BACOVA_05246 0.81 +1.2
746,431 - BACOVA_05246 0.84 -1.3
746,433 - BACOVA_05246 0.84 -0.7
746,483 + -1.2
746,522 - -1.1
746,546 + -3.1
746,546 + -2.5
746,547 - +0.5
746,547 - -0.8
746,562 + -2.9
746,563 - -0.2
746,563 - -0.3
746,618 + BACOVA_05247 0.28 -1.7
746,639 + BACOVA_05247 0.44 -2.7
746,639 + BACOVA_05247 0.44 -2.4
746,641 + BACOVA_05247 0.46 -2.1
746,643 + BACOVA_05247 0.48 -0.7
746,643 + BACOVA_05247 0.48 -2.1
746,644 - BACOVA_05247 0.48 -1.2
746,666 - BACOVA_05247 0.66 +0.5
746,687 + BACOVA_05247 0.83 -0.1
746,725 - +0.3
746,733 - -0.3
746,733 - +0.6
746,780 + -0.6
746,789 - +0.8
746,802 + -0.1
746,805 - -0.1
746,810 + -1.3
746,810 + -0.8
746,811 - +1.2
746,822 - +1.1
746,822 - -0.6
746,825 - +1.2
746,831 + BACOVA_05248 0.11 +0.1
746,832 - BACOVA_05248 0.11 -0.0
746,888 + BACOVA_05248 0.23 +1.6
746,926 - BACOVA_05248 0.31 +0.6
746,927 + BACOVA_05248 0.32 +0.9
747,008 - BACOVA_05248 0.49 +0.5
747,011 + BACOVA_05248 0.50 +0.8
747,011 + BACOVA_05248 0.50 +0.1
747,011 + BACOVA_05248 0.50 +0.3
747,011 + BACOVA_05248 0.50 -0.9
747,012 - BACOVA_05248 0.50 -2.2
747,051 + BACOVA_05248 0.58 -0.1
747,094 - BACOVA_05248 0.68 -0.7
747,096 + BACOVA_05248 0.68 +0.1
747,096 + BACOVA_05248 0.68 -0.8
747,134 - BACOVA_05248 0.76 -0.0
747,141 + BACOVA_05248 0.78 -0.1
747,141 + BACOVA_05248 0.78 -0.3
747,144 + BACOVA_05248 0.79 -0.2
747,144 + BACOVA_05248 0.79 -0.1
747,145 - BACOVA_05248 0.79 +1.1
747,228 - +0.1
747,228 - +0.7
747,240 + -1.1
747,241 - +0.8
747,251 + +0.3
747,252 - +0.7
747,292 + -0.8
747,292 + +0.9
747,299 - -1.2
747,372 - -0.6
747,388 + BACOVA_05249 0.11 +0.3
747,401 - BACOVA_05249 0.12 +0.8
747,432 + BACOVA_05249 0.14 -1.5
747,436 + BACOVA_05249 0.15 -1.1
747,437 - BACOVA_05249 0.15 -1.9
747,437 - BACOVA_05249 0.15 -0.5
747,520 - BACOVA_05249 0.22 -0.5
747,537 + BACOVA_05249 0.23 +0.9
747,571 + BACOVA_05249 0.26 -0.8
747,574 + BACOVA_05249 0.26 -0.1
747,574 + BACOVA_05249 0.26 -0.7
747,585 + BACOVA_05249 0.27 -0.9
747,602 - BACOVA_05249 0.28 +1.0
747,659 - BACOVA_05249 0.33 +1.1

Or see this region's nucleotide sequence