Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05203

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05201 and BACOVA_05202 are separated by 99 nucleotidesBACOVA_05202 and BACOVA_05203 overlap by 8 nucleotidesBACOVA_05203 and BACOVA_05204 are separated by 103 nucleotides BACOVA_05201: BACOVA_05201 - hypothetical protein, at 700,835 to 702,976 _05201 BACOVA_05202: BACOVA_05202 - hypothetical protein, at 703,076 to 703,195 _05202 BACOVA_05203: BACOVA_05203 - tetratricopeptide repeat protein, at 703,188 to 706,541 _05203 BACOVA_05204: BACOVA_05204 - 23S rRNA m2A2503 methyltransferase, at 706,645 to 707,679 _05204 Position (kb) 703 704 705 706 707Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 702.507 kb on + strand, within BACOVA_05201at 702.829 kb on - strandat 702.933 kb on - strandat 702.982 kb on + strandat 702.983 kb on - strandat 702.983 kb on - strandat 702.992 kb on + strandat 702.993 kb on - strandat 702.996 kb on + strandat 702.996 kb on + strandat 703.000 kb on - strandat 703.010 kb on + strandat 703.011 kb on - strandat 703.029 kb on + strandat 703.059 kb on + strandat 703.139 kb on + strand, within BACOVA_05202at 703.140 kb on - strand, within BACOVA_05202at 703.167 kb on + strand, within BACOVA_05202at 703.182 kb on + strand, within BACOVA_05202at 703.183 kb on - strand, within BACOVA_05202at 703.183 kb on - strand, within BACOVA_05202at 703.185 kb on - strandat 703.187 kb on - strandat 703.194 kb on - strandat 703.295 kb on - strandat 703.295 kb on - strandat 703.434 kb on - strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.458 kb on - strandat 703.458 kb on - strandat 703.492 kb on - strandat 703.502 kb on - strandat 703.502 kb on - strandat 703.502 kb on - strandat 703.530 kb on + strand, within BACOVA_05203at 703.541 kb on - strand, within BACOVA_05203at 703.598 kb on - strand, within BACOVA_05203at 703.618 kb on + strand, within BACOVA_05203at 703.627 kb on - strand, within BACOVA_05203at 703.632 kb on + strand, within BACOVA_05203at 703.636 kb on + strand, within BACOVA_05203at 703.743 kb on + strand, within BACOVA_05203at 703.767 kb on - strand, within BACOVA_05203at 703.819 kb on + strand, within BACOVA_05203at 703.835 kb on + strand, within BACOVA_05203at 703.895 kb on - strand, within BACOVA_05203at 704.025 kb on - strand, within BACOVA_05203at 704.039 kb on + strand, within BACOVA_05203at 704.040 kb on - strand, within BACOVA_05203at 704.043 kb on + strand, within BACOVA_05203at 704.043 kb on + strand, within BACOVA_05203at 704.063 kb on + strand, within BACOVA_05203at 704.063 kb on + strand, within BACOVA_05203at 704.064 kb on - strand, within BACOVA_05203at 704.101 kb on + strand, within BACOVA_05203at 704.101 kb on + strand, within BACOVA_05203at 704.102 kb on - strand, within BACOVA_05203at 704.364 kb on + strand, within BACOVA_05203at 704.398 kb on - strand, within BACOVA_05203at 704.442 kb on - strand, within BACOVA_05203at 704.577 kb on + strand, within BACOVA_05203at 704.586 kb on - strand, within BACOVA_05203at 704.590 kb on - strand, within BACOVA_05203at 704.668 kb on + strand, within BACOVA_05203at 704.700 kb on + strand, within BACOVA_05203at 704.718 kb on + strand, within BACOVA_05203at 704.719 kb on - strand, within BACOVA_05203at 704.720 kb on + strand, within BACOVA_05203at 704.721 kb on - strand, within BACOVA_05203at 704.721 kb on - strand, within BACOVA_05203at 704.761 kb on - strand, within BACOVA_05203at 704.852 kb on + strand, within BACOVA_05203at 704.885 kb on + strand, within BACOVA_05203at 704.885 kb on + strand, within BACOVA_05203at 704.977 kb on + strand, within BACOVA_05203at 704.995 kb on - strand, within BACOVA_05203at 705.017 kb on + strand, within BACOVA_05203at 705.017 kb on + strand, within BACOVA_05203at 705.017 kb on + strand, within BACOVA_05203at 705.018 kb on - strand, within BACOVA_05203at 705.019 kb on + strand, within BACOVA_05203at 705.019 kb on + strand, within BACOVA_05203at 705.102 kb on - strand, within BACOVA_05203at 705.106 kb on - strand, within BACOVA_05203at 705.158 kb on + strand, within BACOVA_05203at 705.159 kb on - strand, within BACOVA_05203at 705.159 kb on - strand, within BACOVA_05203at 705.172 kb on - strand, within BACOVA_05203at 705.191 kb on + strand, within BACOVA_05203at 705.191 kb on + strand, within BACOVA_05203at 705.191 kb on + strand, within BACOVA_05203at 705.192 kb on - strand, within BACOVA_05203at 705.194 kb on - strand, within BACOVA_05203at 705.374 kb on + strand, within BACOVA_05203at 705.375 kb on - strand, within BACOVA_05203at 705.631 kb on - strand, within BACOVA_05203at 705.633 kb on + strand, within BACOVA_05203at 705.636 kb on + strand, within BACOVA_05203at 705.637 kb on - strand, within BACOVA_05203at 705.637 kb on - strand, within BACOVA_05203at 705.648 kb on + strand, within BACOVA_05203at 705.648 kb on + strand, within BACOVA_05203at 705.648 kb on + strand, within BACOVA_05203at 705.688 kb on - strand, within BACOVA_05203at 705.744 kb on + strand, within BACOVA_05203at 705.765 kb on + strand, within BACOVA_05203at 705.765 kb on + strand, within BACOVA_05203at 705.766 kb on - strand, within BACOVA_05203at 705.767 kb on + strand, within BACOVA_05203at 705.768 kb on - strand, within BACOVA_05203at 705.892 kb on - strand, within BACOVA_05203at 705.950 kb on - strand, within BACOVA_05203at 705.997 kb on - strand, within BACOVA_05203at 705.999 kb on + strand, within BACOVA_05203at 705.999 kb on + strand, within BACOVA_05203at 706.000 kb on - strand, within BACOVA_05203at 706.000 kb on - strand, within BACOVA_05203at 706.000 kb on - strand, within BACOVA_05203at 706.004 kb on - strand, within BACOVA_05203at 706.060 kb on + strand, within BACOVA_05203at 706.061 kb on - strand, within BACOVA_05203at 706.092 kb on + strand, within BACOVA_05203at 706.092 kb on + strand, within BACOVA_05203at 706.155 kb on - strand, within BACOVA_05203at 706.170 kb on + strand, within BACOVA_05203at 706.171 kb on - strand, within BACOVA_05203at 706.178 kb on + strand, within BACOVA_05203at 706.186 kb on - strand, within BACOVA_05203at 706.242 kb on - strandat 706.258 kb on + strandat 706.259 kb on - strandat 706.260 kb on + strandat 706.260 kb on + strandat 706.281 kb on + strandat 706.282 kb on - strandat 706.300 kb on - strandat 706.350 kb on + strandat 706.351 kb on - strandat 706.374 kb on - strandat 706.458 kb on + strandat 706.459 kb on - strandat 706.518 kb on + strandat 706.518 kb on + strandat 706.518 kb on + strandat 706.520 kb on + strandat 706.551 kb on - strandat 706.551 kb on - strandat 706.573 kb on + strandat 706.601 kb on + strandat 706.623 kb on + strandat 706.623 kb on + strandat 706.710 kb on + strandat 706.710 kb on + strandat 706.779 kb on + strand, within BACOVA_05204at 706.868 kb on + strand, within BACOVA_05204at 706.885 kb on + strand, within BACOVA_05204at 706.893 kb on + strand, within BACOVA_05204at 706.893 kb on + strand, within BACOVA_05204at 706.893 kb on + strand, within BACOVA_05204at 706.927 kb on + strand, within BACOVA_05204at 707.020 kb on + strand, within BACOVA_05204at 707.022 kb on + strand, within BACOVA_05204at 707.022 kb on + strand, within BACOVA_05204at 707.022 kb on + strand, within BACOVA_05204at 707.022 kb on + strand, within BACOVA_05204at 707.051 kb on + strand, within BACOVA_05204at 707.051 kb on + strand, within BACOVA_05204at 707.051 kb on + strand, within BACOVA_05204at 707.091 kb on + strand, within BACOVA_05204at 707.099 kb on + strand, within BACOVA_05204at 707.099 kb on + strand, within BACOVA_05204at 707.099 kb on + strand, within BACOVA_05204at 707.379 kb on + strand, within BACOVA_05204

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
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702,507 + BACOVA_05201 0.78 -1.0
702,829 - -1.0
702,933 - -2.4
702,982 + +1.2
702,983 - -4.1
702,983 - -1.5
702,992 + -2.7
702,993 - -1.8
702,996 + +0.7
702,996 + +0.7
703,000 - -2.4
703,010 + +1.2
703,011 - -0.5
703,029 + +0.5
703,059 + +0.4
703,139 + BACOVA_05202 0.53 +0.3
703,140 - BACOVA_05202 0.53 +0.4
703,167 + BACOVA_05202 0.76 +0.6
703,182 + BACOVA_05202 0.88 -0.1
703,183 - BACOVA_05202 0.89 -1.0
703,183 - BACOVA_05202 0.89 +0.7
703,185 - +0.4
703,187 - +0.3
703,194 - +0.2
703,295 - -0.6
703,295 - -1.5
703,434 - +1.6
703,457 + -1.4
703,457 + -1.2
703,457 + +0.0
703,457 + +1.2
703,457 + +0.2
703,458 - +0.3
703,458 - -2.1
703,492 - -0.5
703,502 - -0.0
703,502 - +0.8
703,502 - +0.5
703,530 + BACOVA_05203 0.10 +1.6
703,541 - BACOVA_05203 0.11 -0.9
703,598 - BACOVA_05203 0.12 +0.0
703,618 + BACOVA_05203 0.13 -0.5
703,627 - BACOVA_05203 0.13 -1.1
703,632 + BACOVA_05203 0.13 -1.0
703,636 + BACOVA_05203 0.13 +0.9
703,743 + BACOVA_05203 0.17 +0.5
703,767 - BACOVA_05203 0.17 -0.4
703,819 + BACOVA_05203 0.19 -0.9
703,835 + BACOVA_05203 0.19 +0.4
703,895 - BACOVA_05203 0.21 +0.8
704,025 - BACOVA_05203 0.25 +0.3
704,039 + BACOVA_05203 0.25 -0.3
704,040 - BACOVA_05203 0.25 -0.9
704,043 + BACOVA_05203 0.25 -1.4
704,043 + BACOVA_05203 0.25 -0.9
704,063 + BACOVA_05203 0.26 +0.7
704,063 + BACOVA_05203 0.26 -0.8
704,064 - BACOVA_05203 0.26 -1.1
704,101 + BACOVA_05203 0.27 -1.4
704,101 + BACOVA_05203 0.27 -0.8
704,102 - BACOVA_05203 0.27 +1.4
704,364 + BACOVA_05203 0.35 -0.6
704,398 - BACOVA_05203 0.36 +0.5
704,442 - BACOVA_05203 0.37 +0.0
704,577 + BACOVA_05203 0.41 +1.5
704,586 - BACOVA_05203 0.42 +0.6
704,590 - BACOVA_05203 0.42 +0.3
704,668 + BACOVA_05203 0.44 -0.0
704,700 + BACOVA_05203 0.45 -0.6
704,718 + BACOVA_05203 0.46 +1.4
704,719 - BACOVA_05203 0.46 -0.8
704,720 + BACOVA_05203 0.46 +1.0
704,721 - BACOVA_05203 0.46 -0.7
704,721 - BACOVA_05203 0.46 +0.8
704,761 - BACOVA_05203 0.47 -0.0
704,852 + BACOVA_05203 0.50 -1.0
704,885 + BACOVA_05203 0.51 +0.3
704,885 + BACOVA_05203 0.51 -0.2
704,977 + BACOVA_05203 0.53 +0.2
704,995 - BACOVA_05203 0.54 -0.2
705,017 + BACOVA_05203 0.55 -0.9
705,017 + BACOVA_05203 0.55 +0.8
705,017 + BACOVA_05203 0.55 -0.6
705,018 - BACOVA_05203 0.55 -0.9
705,019 + BACOVA_05203 0.55 +0.1
705,019 + BACOVA_05203 0.55 +1.2
705,102 - BACOVA_05203 0.57 -0.9
705,106 - BACOVA_05203 0.57 -0.6
705,158 + BACOVA_05203 0.59 -0.1
705,159 - BACOVA_05203 0.59 -2.0
705,159 - BACOVA_05203 0.59 +0.6
705,172 - BACOVA_05203 0.59 +0.8
705,191 + BACOVA_05203 0.60 +1.4
705,191 + BACOVA_05203 0.60 -0.7
705,191 + BACOVA_05203 0.60 -0.6
705,192 - BACOVA_05203 0.60 -0.1
705,194 - BACOVA_05203 0.60 +0.0
705,374 + BACOVA_05203 0.65 +0.5
705,375 - BACOVA_05203 0.65 -0.4
705,631 - BACOVA_05203 0.73 -1.6
705,633 + BACOVA_05203 0.73 +0.9
705,636 + BACOVA_05203 0.73 -0.4
705,637 - BACOVA_05203 0.73 -1.0
705,637 - BACOVA_05203 0.73 +0.8
705,648 + BACOVA_05203 0.73 +0.3
705,648 + BACOVA_05203 0.73 +0.2
705,648 + BACOVA_05203 0.73 -2.7
705,688 - BACOVA_05203 0.75 -0.8
705,744 + BACOVA_05203 0.76 -1.0
705,765 + BACOVA_05203 0.77 +0.1
705,765 + BACOVA_05203 0.77 -2.6
705,766 - BACOVA_05203 0.77 +0.5
705,767 + BACOVA_05203 0.77 +0.3
705,768 - BACOVA_05203 0.77 +0.6
705,892 - BACOVA_05203 0.81 -0.3
705,950 - BACOVA_05203 0.82 +1.6
705,997 - BACOVA_05203 0.84 -0.7
705,999 + BACOVA_05203 0.84 +0.6
705,999 + BACOVA_05203 0.84 -2.6
706,000 - BACOVA_05203 0.84 +1.4
706,000 - BACOVA_05203 0.84 -1.3
706,000 - BACOVA_05203 0.84 +0.0
706,004 - BACOVA_05203 0.84 -0.1
706,060 + BACOVA_05203 0.86 +0.2
706,061 - BACOVA_05203 0.86 +0.0
706,092 + BACOVA_05203 0.87 +0.4
706,092 + BACOVA_05203 0.87 -0.9
706,155 - BACOVA_05203 0.88 +0.4
706,170 + BACOVA_05203 0.89 -1.7
706,171 - BACOVA_05203 0.89 +1.1
706,178 + BACOVA_05203 0.89 -0.5
706,186 - BACOVA_05203 0.89 -1.4
706,242 - -0.9
706,258 + +0.8
706,259 - -1.1
706,260 + -0.8
706,260 + +0.5
706,281 + +1.4
706,282 - -0.4
706,300 - -0.3
706,350 + +0.9
706,351 - +0.2
706,374 - -0.3
706,458 + +0.1
706,459 - +0.1
706,518 + -0.1
706,518 + +0.4
706,518 + -0.1
706,520 + +0.8
706,551 - +0.4
706,551 - -0.4
706,573 + -1.2
706,601 + -0.1
706,623 + +0.0
706,623 + -1.2
706,710 + -1.7
706,710 + -0.0
706,779 + BACOVA_05204 0.13 -0.6
706,868 + BACOVA_05204 0.22 -0.4
706,885 + BACOVA_05204 0.23 -2.5
706,893 + BACOVA_05204 0.24 -0.9
706,893 + BACOVA_05204 0.24 -1.4
706,893 + BACOVA_05204 0.24 +0.7
706,927 + BACOVA_05204 0.27 +0.2
707,020 + BACOVA_05204 0.36 -0.4
707,022 + BACOVA_05204 0.36 -1.6
707,022 + BACOVA_05204 0.36 -0.8
707,022 + BACOVA_05204 0.36 -1.4
707,022 + BACOVA_05204 0.36 +0.0
707,051 + BACOVA_05204 0.39 -1.5
707,051 + BACOVA_05204 0.39 -2.6
707,051 + BACOVA_05204 0.39 -0.1
707,091 + BACOVA_05204 0.43 -0.5
707,099 + BACOVA_05204 0.44 +0.8
707,099 + BACOVA_05204 0.44 -1.1
707,099 + BACOVA_05204 0.44 +0.6
707,379 + BACOVA_05204 0.71 -1.0

Or see this region's nucleotide sequence