Experiment: Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04562 and BACOVA_04563 are separated by 136 nucleotides BACOVA_04563 and BACOVA_04564 are separated by 159 nucleotides BACOVA_04564 and BACOVA_04565 are separated by 134 nucleotides
BACOVA_04562: BACOVA_04562 - hypothetical protein, at 505,194 to 508,352
_04562
BACOVA_04563: BACOVA_04563 - Beta-eliminating lyase, at 508,489 to 509,526
_04563
BACOVA_04564: BACOVA_04564 - hypothetical protein, at 509,686 to 509,904
_04564
BACOVA_04565: BACOVA_04565 - thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein, at 510,039 to 511,880
_04565
Position (kb) 508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 507.512 kb on + strand, within BACOVA_04562 at 507.514 kb on + strand, within BACOVA_04562 at 507.515 kb on - strand, within BACOVA_04562 at 507.520 kb on - strand, within BACOVA_04562 at 507.585 kb on - strand, within BACOVA_04562 at 507.595 kb on + strand, within BACOVA_04562 at 507.595 kb on + strand, within BACOVA_04562 at 507.596 kb on - strand, within BACOVA_04562 at 507.596 kb on - strand, within BACOVA_04562 at 507.620 kb on + strand, within BACOVA_04562 at 507.620 kb on + strand, within BACOVA_04562 at 507.620 kb on + strand, within BACOVA_04562 at 507.622 kb on + strand, within BACOVA_04562 at 507.625 kb on - strand, within BACOVA_04562 at 507.654 kb on + strand, within BACOVA_04562 at 507.654 kb on + strand, within BACOVA_04562 at 507.678 kb on + strand, within BACOVA_04562 at 507.685 kb on + strand, within BACOVA_04562 at 507.686 kb on - strand, within BACOVA_04562 at 507.687 kb on + strand, within BACOVA_04562 at 507.688 kb on - strand, within BACOVA_04562 at 507.688 kb on - strand, within BACOVA_04562 at 507.688 kb on - strand, within BACOVA_04562 at 507.688 kb on - strand, within BACOVA_04562 at 507.688 kb on - strand, within BACOVA_04562 at 507.693 kb on - strand, within BACOVA_04562 at 507.693 kb on - strand, within BACOVA_04562 at 507.709 kb on - strand, within BACOVA_04562 at 507.714 kb on - strand, within BACOVA_04562 at 507.732 kb on + strand, within BACOVA_04562 at 507.793 kb on + strand, within BACOVA_04562 at 507.793 kb on + strand, within BACOVA_04562 at 507.793 kb on + strand, within BACOVA_04562 at 507.794 kb on - strand, within BACOVA_04562 at 507.822 kb on - strand, within BACOVA_04562 at 507.822 kb on - strand, within BACOVA_04562 at 507.827 kb on + strand, within BACOVA_04562 at 507.827 kb on + strand, within BACOVA_04562 at 507.843 kb on - strand, within BACOVA_04562 at 507.871 kb on - strand, within BACOVA_04562 at 507.928 kb on + strand, within BACOVA_04562 at 507.944 kb on + strand, within BACOVA_04562 at 507.947 kb on + strand, within BACOVA_04562 at 507.947 kb on + strand, within BACOVA_04562 at 507.948 kb on - strand, within BACOVA_04562 at 507.960 kb on - strand, within BACOVA_04562 at 507.962 kb on + strand, within BACOVA_04562 at 507.962 kb on + strand, within BACOVA_04562 at 507.963 kb on - strand, within BACOVA_04562 at 507.963 kb on - strand, within BACOVA_04562 at 507.986 kb on + strand, within BACOVA_04562 at 508.068 kb on + strand at 508.070 kb on + strand at 508.085 kb on + strand at 508.088 kb on + strand at 508.088 kb on + strand at 508.088 kb on + strand at 508.089 kb on - strand at 508.089 kb on - strand at 508.100 kb on + strand at 508.132 kb on + strand at 508.146 kb on - strand at 508.166 kb on + strand at 508.166 kb on + strand at 508.189 kb on + strand at 508.190 kb on - strand at 508.190 kb on - strand at 508.191 kb on + strand at 508.191 kb on + strand at 508.247 kb on + strand at 508.247 kb on + strand at 508.253 kb on + strand at 508.329 kb on + strand at 508.332 kb on - strand at 508.353 kb on - strand at 508.353 kb on - strand at 508.356 kb on + strand at 508.357 kb on - strand at 508.357 kb on - strand at 508.392 kb on + strand at 508.401 kb on + strand at 508.417 kb on + strand at 508.420 kb on - strand at 508.449 kb on - strand at 508.461 kb on + strand at 508.462 kb on - strand at 508.510 kb on + strand at 508.520 kb on - strand at 508.521 kb on + strand at 508.521 kb on + strand at 508.560 kb on + strand at 508.608 kb on - strand, within BACOVA_04563 at 508.608 kb on - strand, within BACOVA_04563 at 508.654 kb on + strand, within BACOVA_04563 at 508.662 kb on + strand, within BACOVA_04563 at 508.663 kb on - strand, within BACOVA_04563 at 508.726 kb on - strand, within BACOVA_04563 at 508.767 kb on + strand, within BACOVA_04563 at 508.778 kb on + strand, within BACOVA_04563 at 508.778 kb on + strand, within BACOVA_04563 at 508.778 kb on + strand, within BACOVA_04563 at 508.803 kb on - strand, within BACOVA_04563 at 508.836 kb on + strand, within BACOVA_04563 at 508.836 kb on + strand, within BACOVA_04563 at 508.876 kb on + strand, within BACOVA_04563 at 508.926 kb on + strand, within BACOVA_04563 at 509.017 kb on + strand, within BACOVA_04563 at 509.021 kb on + strand, within BACOVA_04563 at 509.021 kb on + strand, within BACOVA_04563 at 509.021 kb on + strand, within BACOVA_04563 at 509.021 kb on + strand, within BACOVA_04563 at 509.022 kb on - strand, within BACOVA_04563 at 509.022 kb on - strand, within BACOVA_04563 at 509.025 kb on + strand, within BACOVA_04563 at 509.025 kb on + strand, within BACOVA_04563 at 509.026 kb on - strand, within BACOVA_04563 at 509.074 kb on - strand, within BACOVA_04563 at 509.075 kb on + strand, within BACOVA_04563 at 509.075 kb on + strand, within BACOVA_04563 at 509.076 kb on - strand, within BACOVA_04563 at 509.076 kb on - strand, within BACOVA_04563 at 509.076 kb on - strand, within BACOVA_04563 at 509.076 kb on - strand, within BACOVA_04563 at 509.109 kb on - strand, within BACOVA_04563 at 509.178 kb on + strand, within BACOVA_04563 at 509.197 kb on - strand, within BACOVA_04563 at 509.256 kb on - strand, within BACOVA_04563 at 509.259 kb on + strand, within BACOVA_04563 at 509.259 kb on + strand, within BACOVA_04563 at 509.260 kb on - strand, within BACOVA_04563 at 509.283 kb on + strand, within BACOVA_04563 at 509.318 kb on - strand, within BACOVA_04563 at 509.341 kb on - strand, within BACOVA_04563 at 509.412 kb on + strand, within BACOVA_04563 at 509.413 kb on - strand, within BACOVA_04563 at 509.440 kb on + strand at 509.440 kb on + strand at 509.440 kb on + strand at 509.441 kb on - strand at 509.441 kb on - strand at 509.442 kb on + strand at 509.443 kb on - strand at 509.529 kb on + strand at 509.530 kb on - strand at 509.583 kb on + strand at 509.584 kb on - strand at 509.584 kb on - strand at 509.587 kb on + strand at 509.587 kb on + strand at 509.587 kb on + strand at 509.587 kb on + strand at 509.588 kb on - strand at 509.632 kb on + strand at 509.632 kb on + strand at 509.633 kb on - strand at 509.633 kb on - strand at 509.696 kb on + strand at 509.697 kb on - strand at 509.697 kb on - strand at 509.715 kb on - strand, within BACOVA_04564 at 509.715 kb on - strand, within BACOVA_04564 at 509.716 kb on + strand, within BACOVA_04564 at 509.716 kb on + strand, within BACOVA_04564 at 509.717 kb on - strand, within BACOVA_04564 at 509.720 kb on + strand, within BACOVA_04564 at 509.720 kb on + strand, within BACOVA_04564 at 509.721 kb on - strand, within BACOVA_04564 at 509.721 kb on - strand, within BACOVA_04564 at 509.749 kb on + strand, within BACOVA_04564 at 509.750 kb on - strand, within BACOVA_04564 at 509.750 kb on - strand, within BACOVA_04564 at 509.797 kb on - strand, within BACOVA_04564 at 509.797 kb on - strand, within BACOVA_04564 at 509.831 kb on + strand, within BACOVA_04564 at 509.832 kb on - strand, within BACOVA_04564 at 509.848 kb on - strand, within BACOVA_04564 at 509.853 kb on + strand, within BACOVA_04564 at 509.929 kb on - strand at 509.931 kb on + strand at 509.932 kb on - strand at 509.932 kb on - strand at 509.987 kb on + strand at 509.987 kb on + strand at 509.988 kb on - strand at 509.988 kb on - strand at 510.061 kb on + strand at 510.061 kb on + strand at 510.074 kb on + strand at 510.075 kb on - strand at 510.113 kb on - strand at 510.134 kb on + strand at 510.140 kb on + strand at 510.141 kb on - strand at 510.169 kb on + strand at 510.173 kb on + strand at 510.173 kb on + strand at 510.173 kb on + strand at 510.174 kb on - strand at 510.204 kb on + strand at 510.204 kb on + strand at 510.205 kb on - strand at 510.235 kb on + strand, within BACOVA_04565 at 510.274 kb on + strand, within BACOVA_04565 at 510.397 kb on - strand, within BACOVA_04565 at 510.440 kb on + strand, within BACOVA_04565 at 510.489 kb on - strand, within BACOVA_04565 at 510.516 kb on + strand, within BACOVA_04565 at 510.520 kb on - strand, within BACOVA_04565
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/mL (C) remove 507,512 + BACOVA_04562 0.73 +0.5 507,514 + BACOVA_04562 0.73 -0.3 507,515 - BACOVA_04562 0.73 -0.3 507,520 - BACOVA_04562 0.74 -0.2 507,585 - BACOVA_04562 0.76 +0.1 507,595 + BACOVA_04562 0.76 -0.5 507,595 + BACOVA_04562 0.76 -0.0 507,596 - BACOVA_04562 0.76 -0.5 507,596 - BACOVA_04562 0.76 -1.4 507,620 + BACOVA_04562 0.77 -0.2 507,620 + BACOVA_04562 0.77 -0.5 507,620 + BACOVA_04562 0.77 -0.5 507,622 + BACOVA_04562 0.77 -0.2 507,625 - BACOVA_04562 0.77 -0.2 507,654 + BACOVA_04562 0.78 -2.8 507,654 + BACOVA_04562 0.78 -0.2 507,678 + BACOVA_04562 0.79 -0.8 507,685 + BACOVA_04562 0.79 -0.2 507,686 - BACOVA_04562 0.79 -0.1 507,687 + BACOVA_04562 0.79 +0.5 507,688 - BACOVA_04562 0.79 +0.2 507,688 - BACOVA_04562 0.79 -0.4 507,688 - BACOVA_04562 0.79 -0.1 507,688 - BACOVA_04562 0.79 -1.3 507,688 - BACOVA_04562 0.79 -1.1 507,693 - BACOVA_04562 0.79 +1.2 507,693 - BACOVA_04562 0.79 -0.4 507,709 - BACOVA_04562 0.80 -0.7 507,714 - BACOVA_04562 0.80 -0.8 507,732 + BACOVA_04562 0.80 +0.6 507,793 + BACOVA_04562 0.82 -1.7 507,793 + BACOVA_04562 0.82 -0.5 507,793 + BACOVA_04562 0.82 +0.2 507,794 - BACOVA_04562 0.82 -0.5 507,822 - BACOVA_04562 0.83 -1.7 507,822 - BACOVA_04562 0.83 +0.3 507,827 + BACOVA_04562 0.83 +1.0 507,827 + BACOVA_04562 0.83 -1.0 507,843 - BACOVA_04562 0.84 +1.7 507,871 - BACOVA_04562 0.85 -2.5 507,928 + BACOVA_04562 0.87 -0.4 507,944 + BACOVA_04562 0.87 -0.4 507,947 + BACOVA_04562 0.87 -0.9 507,947 + BACOVA_04562 0.87 -0.1 507,948 - BACOVA_04562 0.87 -2.0 507,960 - BACOVA_04562 0.88 -1.4 507,962 + BACOVA_04562 0.88 -3.1 507,962 + BACOVA_04562 0.88 +0.9 507,963 - BACOVA_04562 0.88 -0.2 507,963 - BACOVA_04562 0.88 -1.9 507,986 + BACOVA_04562 0.88 +0.5 508,068 + +1.9 508,070 + -0.7 508,085 + +0.5 508,088 + +0.7 508,088 + +1.3 508,088 + +2.0 508,089 - -0.1 508,089 - +0.1 508,100 + -0.3 508,132 + -1.4 508,146 - -0.1 508,166 + +0.2 508,166 + +0.4 508,189 + -0.1 508,190 - +0.6 508,190 - +1.5 508,191 + -0.9 508,191 + -0.7 508,247 + -0.4 508,247 + -0.4 508,253 + -0.6 508,329 + -0.5 508,332 - -0.7 508,353 - -1.7 508,353 - -0.2 508,356 + -1.1 508,357 - +1.1 508,357 - +1.2 508,392 + -0.1 508,401 + -0.2 508,417 + -0.2 508,420 - +0.6 508,449 - -0.1 508,461 + +1.1 508,462 - +0.4 508,510 + -1.1 508,520 - -0.4 508,521 + +0.1 508,521 + +0.3 508,560 + +0.2 508,608 - BACOVA_04563 0.11 +0.1 508,608 - BACOVA_04563 0.11 -0.3 508,654 + BACOVA_04563 0.16 +0.5 508,662 + BACOVA_04563 0.17 +0.2 508,663 - BACOVA_04563 0.17 -2.3 508,726 - BACOVA_04563 0.23 +0.8 508,767 + BACOVA_04563 0.27 +0.1 508,778 + BACOVA_04563 0.28 -0.3 508,778 + BACOVA_04563 0.28 -0.3 508,778 + BACOVA_04563 0.28 +0.2 508,803 - BACOVA_04563 0.30 -0.8 508,836 + BACOVA_04563 0.33 -0.2 508,836 + BACOVA_04563 0.33 +1.0 508,876 + BACOVA_04563 0.37 -0.0 508,926 + BACOVA_04563 0.42 +0.3 509,017 + BACOVA_04563 0.51 +0.5 509,021 + BACOVA_04563 0.51 +0.8 509,021 + BACOVA_04563 0.51 -1.3 509,021 + BACOVA_04563 0.51 +0.7 509,021 + BACOVA_04563 0.51 -0.7 509,022 - BACOVA_04563 0.51 -1.3 509,022 - BACOVA_04563 0.51 +0.3 509,025 + BACOVA_04563 0.52 +0.4 509,025 + BACOVA_04563 0.52 -1.3 509,026 - BACOVA_04563 0.52 -0.3 509,074 - BACOVA_04563 0.56 -0.4 509,075 + BACOVA_04563 0.56 +0.7 509,075 + BACOVA_04563 0.56 +0.2 509,076 - BACOVA_04563 0.57 +1.2 509,076 - BACOVA_04563 0.57 +0.0 509,076 - BACOVA_04563 0.57 +0.7 509,076 - BACOVA_04563 0.57 -0.9 509,109 - BACOVA_04563 0.60 -0.5 509,178 + BACOVA_04563 0.66 +0.3 509,197 - BACOVA_04563 0.68 +1.0 509,256 - BACOVA_04563 0.74 +0.8 509,259 + BACOVA_04563 0.74 +1.1 509,259 + BACOVA_04563 0.74 +1.0 509,260 - BACOVA_04563 0.74 +0.7 509,283 + BACOVA_04563 0.76 -0.5 509,318 - BACOVA_04563 0.80 -0.5 509,341 - BACOVA_04563 0.82 -0.0 509,412 + BACOVA_04563 0.89 -0.6 509,413 - BACOVA_04563 0.89 +0.3 509,440 + -0.5 509,440 + +0.1 509,440 + -0.2 509,441 - +0.3 509,441 - +0.6 509,442 + -0.3 509,443 - +0.3 509,529 + -0.7 509,530 - +0.8 509,583 + -3.0 509,584 - +0.6 509,584 - +0.0 509,587 + +1.3 509,587 + -0.3 509,587 + +0.0 509,587 + +0.2 509,588 - -0.4 509,632 + -0.1 509,632 + +0.0 509,633 - +2.2 509,633 - -0.1 509,696 + -1.8 509,697 - -0.2 509,697 - +1.0 509,715 - BACOVA_04564 0.13 +0.8 509,715 - BACOVA_04564 0.13 +0.3 509,716 + BACOVA_04564 0.14 +0.8 509,716 + BACOVA_04564 0.14 +0.1 509,717 - BACOVA_04564 0.14 -1.9 509,720 + BACOVA_04564 0.16 +0.9 509,720 + BACOVA_04564 0.16 -0.1 509,721 - BACOVA_04564 0.16 -0.2 509,721 - BACOVA_04564 0.16 +0.5 509,749 + BACOVA_04564 0.29 -0.6 509,750 - BACOVA_04564 0.29 +1.1 509,750 - BACOVA_04564 0.29 -0.2 509,797 - BACOVA_04564 0.51 +0.3 509,797 - BACOVA_04564 0.51 -2.3 509,831 + BACOVA_04564 0.66 -0.4 509,832 - BACOVA_04564 0.67 -0.0 509,848 - BACOVA_04564 0.74 -0.3 509,853 + BACOVA_04564 0.76 +1.0 509,929 - +0.0 509,931 + +0.2 509,932 - -1.0 509,932 - +0.1 509,987 + -0.1 509,987 + +1.1 509,988 - +1.0 509,988 - +0.1 510,061 + +0.3 510,061 + +0.4 510,074 + +0.9 510,075 - -0.0 510,113 - -0.9 510,134 + +0.2 510,140 + -0.5 510,141 - +0.1 510,169 + -0.4 510,173 + -0.7 510,173 + +0.0 510,173 + -0.1 510,174 - -0.1 510,204 + +1.5 510,204 + -0.6 510,205 - -0.6 510,235 + BACOVA_04565 0.11 -0.5 510,274 + BACOVA_04565 0.13 -0.1 510,397 - BACOVA_04565 0.19 -1.6 510,440 + BACOVA_04565 0.22 -0.1 510,489 - BACOVA_04565 0.24 -0.7 510,516 + BACOVA_04565 0.26 +0.5 510,520 - BACOVA_04565 0.26 +0.8
Or see this region's nucleotide sequence