Experiment: Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03628 and BACOVA_03629 are separated by 53 nucleotides BACOVA_03629 and BACOVA_03630 are separated by 210 nucleotides
BACOVA_03628: BACOVA_03628 - endonuclease/exonuclease/phosphatase family protein, at 436,181 to 437,131
_03628
BACOVA_03629: BACOVA_03629 - putative alpha-1,2-mannosidase, at 437,185 to 439,467
_03629
BACOVA_03630: BACOVA_03630 - response regulator receiver domain protein, at 439,678 to 443,718
_03630
Position (kb) 437
438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 436.314 kb on - strand, within BACOVA_03628 at 436.327 kb on - strand, within BACOVA_03628 at 436.327 kb on - strand, within BACOVA_03628 at 436.330 kb on + strand, within BACOVA_03628 at 436.331 kb on - strand, within BACOVA_03628 at 436.348 kb on - strand, within BACOVA_03628 at 436.348 kb on - strand, within BACOVA_03628 at 436.348 kb on - strand, within BACOVA_03628 at 436.379 kb on + strand, within BACOVA_03628 at 436.379 kb on + strand, within BACOVA_03628 at 436.379 kb on + strand, within BACOVA_03628 at 436.380 kb on - strand, within BACOVA_03628 at 436.382 kb on - strand, within BACOVA_03628 at 436.403 kb on - strand, within BACOVA_03628 at 436.441 kb on + strand, within BACOVA_03628 at 436.441 kb on + strand, within BACOVA_03628 at 436.442 kb on - strand, within BACOVA_03628 at 436.506 kb on + strand, within BACOVA_03628 at 436.506 kb on + strand, within BACOVA_03628 at 436.506 kb on + strand, within BACOVA_03628 at 436.506 kb on + strand, within BACOVA_03628 at 436.507 kb on - strand, within BACOVA_03628 at 436.507 kb on - strand, within BACOVA_03628 at 436.507 kb on - strand, within BACOVA_03628 at 436.675 kb on + strand, within BACOVA_03628 at 436.708 kb on + strand, within BACOVA_03628 at 436.708 kb on + strand, within BACOVA_03628 at 436.813 kb on + strand, within BACOVA_03628 at 436.854 kb on - strand, within BACOVA_03628 at 436.863 kb on + strand, within BACOVA_03628 at 436.864 kb on - strand, within BACOVA_03628 at 436.891 kb on + strand, within BACOVA_03628 at 437.051 kb on - strand at 437.064 kb on + strand at 437.108 kb on + strand at 437.137 kb on + strand at 437.151 kb on + strand at 437.151 kb on + strand at 437.204 kb on + strand at 437.204 kb on + strand at 437.205 kb on - strand at 437.205 kb on - strand at 437.209 kb on + strand at 437.210 kb on - strand at 437.268 kb on + strand at 437.272 kb on - strand at 437.280 kb on + strand at 437.370 kb on + strand at 437.370 kb on + strand at 437.440 kb on + strand, within BACOVA_03629 at 437.440 kb on + strand, within BACOVA_03629 at 437.441 kb on - strand, within BACOVA_03629 at 437.446 kb on + strand, within BACOVA_03629 at 437.447 kb on + strand, within BACOVA_03629 at 437.447 kb on + strand, within BACOVA_03629 at 437.448 kb on - strand, within BACOVA_03629 at 437.494 kb on + strand, within BACOVA_03629 at 437.494 kb on + strand, within BACOVA_03629 at 437.495 kb on - strand, within BACOVA_03629 at 437.495 kb on - strand, within BACOVA_03629 at 437.498 kb on + strand, within BACOVA_03629 at 437.556 kb on + strand, within BACOVA_03629 at 437.556 kb on + strand, within BACOVA_03629 at 437.557 kb on - strand, within BACOVA_03629 at 437.558 kb on + strand, within BACOVA_03629 at 437.559 kb on - strand, within BACOVA_03629 at 437.560 kb on + strand, within BACOVA_03629 at 437.560 kb on + strand, within BACOVA_03629 at 437.560 kb on + strand, within BACOVA_03629 at 437.581 kb on + strand, within BACOVA_03629 at 437.582 kb on - strand, within BACOVA_03629 at 437.616 kb on - strand, within BACOVA_03629 at 437.616 kb on - strand, within BACOVA_03629 at 437.628 kb on - strand, within BACOVA_03629 at 437.629 kb on + strand, within BACOVA_03629 at 437.629 kb on + strand, within BACOVA_03629 at 437.629 kb on + strand, within BACOVA_03629 at 437.630 kb on - strand, within BACOVA_03629 at 437.630 kb on - strand, within BACOVA_03629 at 437.643 kb on + strand, within BACOVA_03629 at 437.680 kb on + strand, within BACOVA_03629 at 437.799 kb on + strand, within BACOVA_03629 at 437.800 kb on - strand, within BACOVA_03629 at 437.800 kb on - strand, within BACOVA_03629 at 437.844 kb on + strand, within BACOVA_03629 at 437.844 kb on + strand, within BACOVA_03629 at 437.976 kb on + strand, within BACOVA_03629 at 437.978 kb on + strand, within BACOVA_03629 at 438.019 kb on + strand, within BACOVA_03629 at 438.019 kb on + strand, within BACOVA_03629 at 438.019 kb on + strand, within BACOVA_03629 at 438.020 kb on - strand, within BACOVA_03629 at 438.020 kb on - strand, within BACOVA_03629 at 438.025 kb on - strand, within BACOVA_03629 at 438.042 kb on + strand, within BACOVA_03629 at 438.042 kb on + strand, within BACOVA_03629 at 438.042 kb on + strand, within BACOVA_03629 at 438.043 kb on - strand, within BACOVA_03629 at 438.044 kb on + strand, within BACOVA_03629 at 438.044 kb on + strand, within BACOVA_03629 at 438.045 kb on - strand, within BACOVA_03629 at 438.045 kb on - strand, within BACOVA_03629 at 438.045 kb on - strand, within BACOVA_03629 at 438.045 kb on - strand, within BACOVA_03629 at 438.050 kb on + strand, within BACOVA_03629 at 438.050 kb on + strand, within BACOVA_03629 at 438.051 kb on - strand, within BACOVA_03629 at 438.117 kb on - strand, within BACOVA_03629 at 438.206 kb on + strand, within BACOVA_03629 at 438.207 kb on - strand, within BACOVA_03629 at 438.207 kb on - strand, within BACOVA_03629 at 438.227 kb on + strand, within BACOVA_03629 at 438.227 kb on + strand, within BACOVA_03629 at 438.267 kb on + strand, within BACOVA_03629 at 438.324 kb on + strand, within BACOVA_03629 at 438.325 kb on - strand, within BACOVA_03629 at 438.328 kb on + strand, within BACOVA_03629 at 438.329 kb on - strand, within BACOVA_03629 at 438.329 kb on - strand, within BACOVA_03629 at 438.366 kb on - strand, within BACOVA_03629 at 438.429 kb on + strand, within BACOVA_03629 at 438.429 kb on + strand, within BACOVA_03629 at 438.455 kb on + strand, within BACOVA_03629 at 438.464 kb on + strand, within BACOVA_03629 at 438.491 kb on - strand, within BACOVA_03629 at 438.529 kb on + strand, within BACOVA_03629 at 438.530 kb on - strand, within BACOVA_03629 at 438.550 kb on + strand, within BACOVA_03629 at 438.574 kb on + strand, within BACOVA_03629 at 438.852 kb on - strand, within BACOVA_03629 at 438.935 kb on + strand, within BACOVA_03629 at 438.936 kb on - strand, within BACOVA_03629 at 438.936 kb on - strand, within BACOVA_03629 at 438.968 kb on + strand, within BACOVA_03629 at 438.969 kb on - strand, within BACOVA_03629 at 439.021 kb on - strand, within BACOVA_03629 at 439.039 kb on + strand, within BACOVA_03629 at 439.059 kb on - strand, within BACOVA_03629 at 439.059 kb on - strand, within BACOVA_03629 at 439.065 kb on + strand, within BACOVA_03629 at 439.066 kb on - strand, within BACOVA_03629 at 439.066 kb on - strand, within BACOVA_03629 at 439.066 kb on - strand, within BACOVA_03629 at 439.068 kb on - strand, within BACOVA_03629 at 439.068 kb on - strand, within BACOVA_03629 at 439.068 kb on - strand, within BACOVA_03629 at 439.070 kb on + strand, within BACOVA_03629 at 439.071 kb on - strand, within BACOVA_03629 at 439.071 kb on - strand, within BACOVA_03629 at 439.074 kb on - strand, within BACOVA_03629 at 439.235 kb on + strand, within BACOVA_03629 at 439.236 kb on - strand, within BACOVA_03629 at 439.241 kb on + strand at 439.329 kb on + strand at 439.373 kb on + strand at 439.412 kb on + strand at 439.412 kb on + strand at 439.435 kb on + strand at 439.540 kb on - strand at 439.597 kb on + strand at 439.652 kb on + strand at 439.654 kb on + strand at 439.672 kb on + strand at 439.672 kb on + strand at 439.672 kb on + strand at 439.673 kb on - strand at 439.673 kb on - strand at 439.739 kb on - strand at 439.774 kb on + strand at 439.774 kb on + strand at 439.775 kb on - strand at 439.775 kb on - strand at 439.775 kb on - strand at 439.777 kb on - strand at 439.855 kb on - strand at 439.858 kb on + strand at 439.939 kb on + strand at 439.957 kb on + strand at 439.972 kb on + strand at 440.020 kb on + strand at 440.046 kb on + strand at 440.047 kb on - strand at 440.083 kb on + strand, within BACOVA_03630 at 440.088 kb on + strand, within BACOVA_03630 at 440.092 kb on - strand, within BACOVA_03630 at 440.101 kb on + strand, within BACOVA_03630 at 440.172 kb on - strand, within BACOVA_03630 at 440.222 kb on - strand, within BACOVA_03630 at 440.234 kb on - strand, within BACOVA_03630 at 440.238 kb on + strand, within BACOVA_03630 at 440.239 kb on - strand, within BACOVA_03630 at 440.265 kb on + strand, within BACOVA_03630 at 440.344 kb on + strand, within BACOVA_03630 at 440.344 kb on + strand, within BACOVA_03630 at 440.347 kb on + strand, within BACOVA_03630 at 440.348 kb on - strand, within BACOVA_03630 at 440.351 kb on + strand, within BACOVA_03630 at 440.417 kb on + strand, within BACOVA_03630 at 440.418 kb on - strand, within BACOVA_03630 at 440.465 kb on - strand, within BACOVA_03630
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/mL (C) remove 436,314 - BACOVA_03628 0.14 +1.1 436,327 - BACOVA_03628 0.15 +0.4 436,327 - BACOVA_03628 0.15 +1.3 436,330 + BACOVA_03628 0.16 -0.8 436,331 - BACOVA_03628 0.16 +2.0 436,348 - BACOVA_03628 0.18 -0.2 436,348 - BACOVA_03628 0.18 +1.5 436,348 - BACOVA_03628 0.18 +0.3 436,379 + BACOVA_03628 0.21 -0.8 436,379 + BACOVA_03628 0.21 +0.1 436,379 + BACOVA_03628 0.21 -0.6 436,380 - BACOVA_03628 0.21 +1.5 436,382 - BACOVA_03628 0.21 +1.4 436,403 - BACOVA_03628 0.23 +1.1 436,441 + BACOVA_03628 0.27 -0.0 436,441 + BACOVA_03628 0.27 -0.4 436,442 - BACOVA_03628 0.27 +0.4 436,506 + BACOVA_03628 0.34 -0.2 436,506 + BACOVA_03628 0.34 -0.6 436,506 + BACOVA_03628 0.34 +0.7 436,506 + BACOVA_03628 0.34 -0.6 436,507 - BACOVA_03628 0.34 +1.1 436,507 - BACOVA_03628 0.34 +0.5 436,507 - BACOVA_03628 0.34 +0.5 436,675 + BACOVA_03628 0.52 -0.7 436,708 + BACOVA_03628 0.55 -1.2 436,708 + BACOVA_03628 0.55 -0.7 436,813 + BACOVA_03628 0.66 -0.6 436,854 - BACOVA_03628 0.71 +0.8 436,863 + BACOVA_03628 0.72 -1.1 436,864 - BACOVA_03628 0.72 +1.4 436,891 + BACOVA_03628 0.75 +0.1 437,051 - +1.5 437,064 + -0.4 437,108 + +0.6 437,137 + -0.6 437,151 + -0.2 437,151 + -1.1 437,204 + +0.1 437,204 + +0.3 437,205 - +0.2 437,205 - +0.8 437,209 + +0.1 437,210 - +1.5 437,268 + +0.5 437,272 - +1.8 437,280 + +1.8 437,370 + +1.5 437,370 + +0.6 437,440 + BACOVA_03629 0.11 +1.8 437,440 + BACOVA_03629 0.11 +0.2 437,441 - BACOVA_03629 0.11 -0.3 437,446 + BACOVA_03629 0.11 -0.0 437,447 + BACOVA_03629 0.11 -0.9 437,447 + BACOVA_03629 0.11 +0.6 437,448 - BACOVA_03629 0.12 +0.9 437,494 + BACOVA_03629 0.14 +0.8 437,494 + BACOVA_03629 0.14 +1.1 437,495 - BACOVA_03629 0.14 +1.1 437,495 - BACOVA_03629 0.14 +0.9 437,498 + BACOVA_03629 0.14 -1.6 437,556 + BACOVA_03629 0.16 +1.8 437,556 + BACOVA_03629 0.16 +0.9 437,557 - BACOVA_03629 0.16 +1.8 437,558 + BACOVA_03629 0.16 -0.3 437,559 - BACOVA_03629 0.16 +0.7 437,560 + BACOVA_03629 0.16 +1.0 437,560 + BACOVA_03629 0.16 +0.2 437,560 + BACOVA_03629 0.16 +1.9 437,581 + BACOVA_03629 0.17 +0.9 437,582 - BACOVA_03629 0.17 -0.8 437,616 - BACOVA_03629 0.19 +0.8 437,616 - BACOVA_03629 0.19 +0.1 437,628 - BACOVA_03629 0.19 +1.3 437,629 + BACOVA_03629 0.19 +1.3 437,629 + BACOVA_03629 0.19 +1.3 437,629 + BACOVA_03629 0.19 +0.9 437,630 - BACOVA_03629 0.19 +1.6 437,630 - BACOVA_03629 0.19 +0.9 437,643 + BACOVA_03629 0.20 +0.6 437,680 + BACOVA_03629 0.22 +0.8 437,799 + BACOVA_03629 0.27 +1.6 437,800 - BACOVA_03629 0.27 +1.1 437,800 - BACOVA_03629 0.27 +0.7 437,844 + BACOVA_03629 0.29 +0.4 437,844 + BACOVA_03629 0.29 +0.6 437,976 + BACOVA_03629 0.35 +1.5 437,978 + BACOVA_03629 0.35 +1.0 438,019 + BACOVA_03629 0.37 +1.1 438,019 + BACOVA_03629 0.37 +0.6 438,019 + BACOVA_03629 0.37 +1.3 438,020 - BACOVA_03629 0.37 +2.4 438,020 - BACOVA_03629 0.37 +1.1 438,025 - BACOVA_03629 0.37 +0.9 438,042 + BACOVA_03629 0.38 +0.9 438,042 + BACOVA_03629 0.38 +0.4 438,042 + BACOVA_03629 0.38 +0.2 438,043 - BACOVA_03629 0.38 +0.9 438,044 + BACOVA_03629 0.38 +0.5 438,044 + BACOVA_03629 0.38 +0.2 438,045 - BACOVA_03629 0.38 +1.3 438,045 - BACOVA_03629 0.38 -0.5 438,045 - BACOVA_03629 0.38 +0.3 438,045 - BACOVA_03629 0.38 +1.4 438,050 + BACOVA_03629 0.38 +0.6 438,050 + BACOVA_03629 0.38 +1.9 438,051 - BACOVA_03629 0.38 -0.7 438,117 - BACOVA_03629 0.41 +1.3 438,206 + BACOVA_03629 0.45 +0.6 438,207 - BACOVA_03629 0.45 +0.8 438,207 - BACOVA_03629 0.45 +0.4 438,227 + BACOVA_03629 0.46 +1.7 438,227 + BACOVA_03629 0.46 +0.9 438,267 + BACOVA_03629 0.47 +1.3 438,324 + BACOVA_03629 0.50 +1.0 438,325 - BACOVA_03629 0.50 +1.0 438,328 + BACOVA_03629 0.50 +0.8 438,329 - BACOVA_03629 0.50 +0.9 438,329 - BACOVA_03629 0.50 +0.9 438,366 - BACOVA_03629 0.52 -0.8 438,429 + BACOVA_03629 0.54 -0.1 438,429 + BACOVA_03629 0.54 +1.6 438,455 + BACOVA_03629 0.56 +1.9 438,464 + BACOVA_03629 0.56 +1.4 438,491 - BACOVA_03629 0.57 +1.0 438,529 + BACOVA_03629 0.59 +1.9 438,530 - BACOVA_03629 0.59 +2.1 438,550 + BACOVA_03629 0.60 +1.8 438,574 + BACOVA_03629 0.61 +1.9 438,852 - BACOVA_03629 0.73 +0.6 438,935 + BACOVA_03629 0.77 +1.3 438,936 - BACOVA_03629 0.77 +2.0 438,936 - BACOVA_03629 0.77 +0.3 438,968 + BACOVA_03629 0.78 +1.7 438,969 - BACOVA_03629 0.78 +0.6 439,021 - BACOVA_03629 0.80 -0.4 439,039 + BACOVA_03629 0.81 +1.1 439,059 - BACOVA_03629 0.82 +1.6 439,059 - BACOVA_03629 0.82 +0.1 439,065 + BACOVA_03629 0.82 +2.3 439,066 - BACOVA_03629 0.82 +0.8 439,066 - BACOVA_03629 0.82 +0.9 439,066 - BACOVA_03629 0.82 +1.2 439,068 - BACOVA_03629 0.82 +0.3 439,068 - BACOVA_03629 0.82 +0.3 439,068 - BACOVA_03629 0.82 -0.4 439,070 + BACOVA_03629 0.83 +0.7 439,071 - BACOVA_03629 0.83 -0.4 439,071 - BACOVA_03629 0.83 +1.0 439,074 - BACOVA_03629 0.83 +2.1 439,235 + BACOVA_03629 0.90 +0.8 439,236 - BACOVA_03629 0.90 -0.2 439,241 + +1.9 439,329 + +1.3 439,373 + +2.5 439,412 + +1.2 439,412 + +1.7 439,435 + +1.9 439,540 - -1.9 439,597 + +0.1 439,652 + +1.1 439,654 + +1.4 439,672 + +0.5 439,672 + +1.3 439,672 + +0.1 439,673 - -2.9 439,673 - -1.6 439,739 - -1.1 439,774 + -0.9 439,774 + -1.5 439,775 - -2.7 439,775 - -1.4 439,775 - -0.2 439,777 - -0.6 439,855 - -1.2 439,858 + -0.3 439,939 + -1.3 439,957 + -0.8 439,972 + -2.3 440,020 + -3.2 440,046 + -2.2 440,047 - -1.2 440,083 + BACOVA_03630 0.10 -1.8 440,088 + BACOVA_03630 0.10 -1.3 440,092 - BACOVA_03630 0.10 -0.3 440,101 + BACOVA_03630 0.10 -1.8 440,172 - BACOVA_03630 0.12 -0.8 440,222 - BACOVA_03630 0.13 -2.7 440,234 - BACOVA_03630 0.14 -0.5 440,238 + BACOVA_03630 0.14 -0.9 440,239 - BACOVA_03630 0.14 -1.9 440,265 + BACOVA_03630 0.15 -1.1 440,344 + BACOVA_03630 0.16 -1.1 440,344 + BACOVA_03630 0.16 -1.9 440,347 + BACOVA_03630 0.17 -1.0 440,348 - BACOVA_03630 0.17 -0.9 440,351 + BACOVA_03630 0.17 -0.3 440,417 + BACOVA_03630 0.18 -1.4 440,418 - BACOVA_03630 0.18 -1.3 440,465 - BACOVA_03630 0.19 -2.6
Or see this region's nucleotide sequence