Experiment: Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03556 and BACOVA_03557 are separated by 15 nucleotides BACOVA_03557 and BACOVA_03558 are separated by 24 nucleotides
BACOVA_03556: BACOVA_03556 - TonB-linked outer membrane protein, SusC/RagA family, at 328,985 to 332,308
_03556
BACOVA_03557: BACOVA_03557 - hypothetical protein, at 332,324 to 333,964
_03557
BACOVA_03558: BACOVA_03558 - hypothetical protein, at 333,989 to 335,119
_03558
Position (kb) 332
333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 331.324 kb on + strand, within BACOVA_03556 at 331.334 kb on + strand, within BACOVA_03556 at 331.348 kb on - strand, within BACOVA_03556 at 331.372 kb on - strand, within BACOVA_03556 at 331.388 kb on + strand, within BACOVA_03556 at 331.388 kb on + strand, within BACOVA_03556 at 331.389 kb on - strand, within BACOVA_03556 at 331.392 kb on - strand, within BACOVA_03556 at 331.400 kb on - strand, within BACOVA_03556 at 331.403 kb on - strand, within BACOVA_03556 at 331.403 kb on - strand, within BACOVA_03556 at 331.406 kb on + strand, within BACOVA_03556 at 331.407 kb on - strand, within BACOVA_03556 at 331.407 kb on - strand, within BACOVA_03556 at 331.407 kb on - strand, within BACOVA_03556 at 331.407 kb on - strand, within BACOVA_03556 at 331.461 kb on - strand, within BACOVA_03556 at 331.475 kb on - strand, within BACOVA_03556 at 331.506 kb on + strand, within BACOVA_03556 at 331.507 kb on - strand, within BACOVA_03556 at 331.512 kb on - strand, within BACOVA_03556 at 331.526 kb on - strand, within BACOVA_03556 at 331.537 kb on - strand, within BACOVA_03556 at 331.570 kb on + strand, within BACOVA_03556 at 331.571 kb on - strand, within BACOVA_03556 at 331.571 kb on - strand, within BACOVA_03556 at 331.572 kb on + strand, within BACOVA_03556 at 331.573 kb on - strand, within BACOVA_03556 at 331.601 kb on + strand, within BACOVA_03556 at 331.602 kb on - strand, within BACOVA_03556 at 331.607 kb on - strand, within BACOVA_03556 at 331.630 kb on + strand, within BACOVA_03556 at 331.696 kb on + strand, within BACOVA_03556 at 331.700 kb on + strand, within BACOVA_03556 at 331.701 kb on - strand, within BACOVA_03556 at 331.736 kb on + strand, within BACOVA_03556 at 331.974 kb on + strand, within BACOVA_03556 at 331.975 kb on - strand, within BACOVA_03556 at 332.013 kb on - strand at 332.057 kb on + strand at 332.057 kb on + strand at 332.058 kb on - strand at 332.058 kb on - strand at 332.058 kb on - strand at 332.058 kb on - strand at 332.062 kb on - strand at 332.062 kb on - strand at 332.063 kb on + strand at 332.101 kb on + strand at 332.101 kb on + strand at 332.105 kb on + strand at 332.106 kb on - strand at 332.106 kb on - strand at 332.110 kb on + strand at 332.111 kb on - strand at 332.111 kb on - strand at 332.117 kb on - strand at 332.117 kb on - strand at 332.117 kb on - strand at 332.119 kb on + strand at 332.120 kb on - strand at 332.120 kb on - strand at 332.150 kb on - strand at 332.164 kb on - strand at 332.186 kb on + strand at 332.228 kb on - strand at 332.235 kb on - strand at 332.275 kb on + strand at 332.276 kb on - strand at 332.306 kb on + strand at 332.309 kb on + strand at 332.309 kb on + strand at 332.310 kb on - strand at 332.320 kb on + strand at 332.350 kb on - strand at 332.361 kb on + strand at 332.377 kb on - strand at 332.408 kb on - strand at 332.473 kb on + strand at 332.474 kb on - strand at 332.474 kb on - strand at 332.480 kb on - strand at 332.480 kb on - strand at 332.530 kb on + strand, within BACOVA_03557 at 332.548 kb on - strand, within BACOVA_03557 at 332.548 kb on - strand, within BACOVA_03557 at 332.548 kb on - strand, within BACOVA_03557 at 332.552 kb on + strand, within BACOVA_03557 at 332.553 kb on - strand, within BACOVA_03557 at 332.620 kb on + strand, within BACOVA_03557 at 332.624 kb on - strand, within BACOVA_03557 at 332.629 kb on + strand, within BACOVA_03557 at 332.630 kb on - strand, within BACOVA_03557 at 332.630 kb on - strand, within BACOVA_03557 at 332.633 kb on - strand, within BACOVA_03557 at 332.639 kb on + strand, within BACOVA_03557 at 332.682 kb on - strand, within BACOVA_03557 at 332.683 kb on + strand, within BACOVA_03557 at 332.684 kb on - strand, within BACOVA_03557 at 332.718 kb on + strand, within BACOVA_03557 at 332.819 kb on + strand, within BACOVA_03557 at 332.820 kb on - strand, within BACOVA_03557 at 332.840 kb on - strand, within BACOVA_03557 at 332.840 kb on - strand, within BACOVA_03557 at 332.876 kb on + strand, within BACOVA_03557 at 332.876 kb on + strand, within BACOVA_03557 at 332.877 kb on - strand, within BACOVA_03557 at 332.879 kb on - strand, within BACOVA_03557 at 332.960 kb on + strand, within BACOVA_03557 at 332.961 kb on - strand, within BACOVA_03557 at 332.970 kb on + strand, within BACOVA_03557 at 332.972 kb on + strand, within BACOVA_03557 at 333.003 kb on - strand, within BACOVA_03557 at 333.076 kb on + strand, within BACOVA_03557 at 333.076 kb on + strand, within BACOVA_03557 at 333.098 kb on - strand, within BACOVA_03557 at 333.151 kb on + strand, within BACOVA_03557 at 333.191 kb on + strand, within BACOVA_03557 at 333.192 kb on - strand, within BACOVA_03557 at 333.192 kb on - strand, within BACOVA_03557 at 333.206 kb on - strand, within BACOVA_03557 at 333.228 kb on - strand, within BACOVA_03557 at 333.255 kb on + strand, within BACOVA_03557 at 333.284 kb on - strand, within BACOVA_03557 at 333.293 kb on + strand, within BACOVA_03557 at 333.293 kb on + strand, within BACOVA_03557 at 333.294 kb on - strand, within BACOVA_03557 at 333.324 kb on - strand, within BACOVA_03557 at 333.364 kb on + strand, within BACOVA_03557 at 333.365 kb on - strand, within BACOVA_03557 at 333.369 kb on - strand, within BACOVA_03557 at 333.410 kb on - strand, within BACOVA_03557 at 333.410 kb on - strand, within BACOVA_03557 at 333.413 kb on + strand, within BACOVA_03557 at 333.413 kb on + strand, within BACOVA_03557 at 333.498 kb on - strand, within BACOVA_03557 at 333.498 kb on - strand, within BACOVA_03557 at 333.500 kb on - strand, within BACOVA_03557 at 333.514 kb on + strand, within BACOVA_03557 at 333.514 kb on + strand, within BACOVA_03557 at 333.557 kb on + strand, within BACOVA_03557 at 333.558 kb on - strand, within BACOVA_03557 at 333.560 kb on - strand, within BACOVA_03557 at 333.588 kb on - strand, within BACOVA_03557 at 333.588 kb on - strand, within BACOVA_03557 at 333.640 kb on + strand, within BACOVA_03557 at 333.640 kb on + strand, within BACOVA_03557 at 333.776 kb on - strand, within BACOVA_03557 at 333.776 kb on - strand, within BACOVA_03557 at 333.879 kb on - strand at 333.926 kb on - strand at 333.963 kb on - strand at 333.968 kb on - strand at 333.968 kb on - strand at 333.974 kb on - strand at 334.023 kb on - strand at 334.024 kb on + strand at 334.025 kb on - strand at 334.050 kb on + strand at 334.050 kb on + strand at 334.051 kb on - strand at 334.076 kb on - strand at 334.091 kb on - strand at 334.091 kb on - strand at 334.091 kb on - strand at 334.093 kb on - strand at 334.133 kb on + strand, within BACOVA_03558 at 334.133 kb on + strand, within BACOVA_03558 at 334.136 kb on + strand, within BACOVA_03558 at 334.137 kb on - strand, within BACOVA_03558 at 334.137 kb on - strand, within BACOVA_03558 at 334.155 kb on - strand, within BACOVA_03558 at 334.156 kb on + strand, within BACOVA_03558 at 334.175 kb on + strand, within BACOVA_03558 at 334.202 kb on + strand, within BACOVA_03558 at 334.203 kb on - strand, within BACOVA_03558 at 334.241 kb on + strand, within BACOVA_03558 at 334.241 kb on + strand, within BACOVA_03558 at 334.242 kb on - strand, within BACOVA_03558 at 334.252 kb on + strand, within BACOVA_03558 at 334.265 kb on - strand, within BACOVA_03558 at 334.424 kb on + strand, within BACOVA_03558 at 334.548 kb on - strand, within BACOVA_03558 at 334.621 kb on - strand, within BACOVA_03558 at 334.621 kb on - strand, within BACOVA_03558 at 334.713 kb on - strand, within BACOVA_03558 at 334.762 kb on + strand, within BACOVA_03558 at 334.779 kb on - strand, within BACOVA_03558 at 334.787 kb on - strand, within BACOVA_03558 at 334.805 kb on + strand, within BACOVA_03558 at 334.805 kb on + strand, within BACOVA_03558 at 334.910 kb on + strand, within BACOVA_03558 at 334.910 kb on + strand, within BACOVA_03558 at 334.951 kb on + strand, within BACOVA_03558 at 334.951 kb on + strand, within BACOVA_03558 at 334.951 kb on + strand, within BACOVA_03558
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/mL (C) remove 331,324 + BACOVA_03556 0.70 +0.7 331,334 + BACOVA_03556 0.71 +0.9 331,348 - BACOVA_03556 0.71 +0.0 331,372 - BACOVA_03556 0.72 +0.7 331,388 + BACOVA_03556 0.72 +0.1 331,388 + BACOVA_03556 0.72 -1.3 331,389 - BACOVA_03556 0.72 +0.0 331,392 - BACOVA_03556 0.72 -0.1 331,400 - BACOVA_03556 0.73 -0.0 331,403 - BACOVA_03556 0.73 -0.9 331,403 - BACOVA_03556 0.73 +0.4 331,406 + BACOVA_03556 0.73 -0.2 331,407 - BACOVA_03556 0.73 +0.9 331,407 - BACOVA_03556 0.73 -0.5 331,407 - BACOVA_03556 0.73 -0.6 331,407 - BACOVA_03556 0.73 -0.4 331,461 - BACOVA_03556 0.74 +0.2 331,475 - BACOVA_03556 0.75 -0.9 331,506 + BACOVA_03556 0.76 +0.9 331,507 - BACOVA_03556 0.76 +1.0 331,512 - BACOVA_03556 0.76 -0.5 331,526 - BACOVA_03556 0.76 +0.5 331,537 - BACOVA_03556 0.77 -0.4 331,570 + BACOVA_03556 0.78 -0.7 331,571 - BACOVA_03556 0.78 -0.3 331,571 - BACOVA_03556 0.78 -0.3 331,572 + BACOVA_03556 0.78 +0.3 331,573 - BACOVA_03556 0.78 +0.3 331,601 + BACOVA_03556 0.79 -0.3 331,602 - BACOVA_03556 0.79 +1.8 331,607 - BACOVA_03556 0.79 -0.0 331,630 + BACOVA_03556 0.80 +0.3 331,696 + BACOVA_03556 0.82 -1.1 331,700 + BACOVA_03556 0.82 +1.4 331,701 - BACOVA_03556 0.82 -0.9 331,736 + BACOVA_03556 0.83 +1.0 331,974 + BACOVA_03556 0.90 -0.1 331,975 - BACOVA_03556 0.90 +0.3 332,013 - -0.6 332,057 + +0.5 332,057 + -2.5 332,058 - -0.1 332,058 - +0.0 332,058 - -0.0 332,058 - -0.4 332,062 - -0.5 332,062 - +0.2 332,063 + -0.4 332,101 + -1.1 332,101 + +0.1 332,105 + +0.9 332,106 - -0.7 332,106 - -0.9 332,110 + -0.7 332,111 - -0.4 332,111 - -0.8 332,117 - -0.4 332,117 - +0.1 332,117 - +0.4 332,119 + -1.0 332,120 - +0.4 332,120 - +1.2 332,150 - -0.7 332,164 - +0.1 332,186 + -0.3 332,228 - -0.2 332,235 - -0.3 332,275 + +1.5 332,276 - +0.3 332,306 + +0.5 332,309 + +1.2 332,309 + -1.1 332,310 - +1.6 332,320 + -0.9 332,350 - -1.2 332,361 + +0.6 332,377 - -0.9 332,408 - +0.5 332,473 + +0.2 332,474 - -3.4 332,474 - +0.3 332,480 - -0.9 332,480 - -0.5 332,530 + BACOVA_03557 0.13 +0.2 332,548 - BACOVA_03557 0.14 -0.6 332,548 - BACOVA_03557 0.14 +0.3 332,548 - BACOVA_03557 0.14 -0.7 332,552 + BACOVA_03557 0.14 -2.1 332,553 - BACOVA_03557 0.14 -0.3 332,620 + BACOVA_03557 0.18 -0.5 332,624 - BACOVA_03557 0.18 -0.5 332,629 + BACOVA_03557 0.19 +0.2 332,630 - BACOVA_03557 0.19 +0.4 332,630 - BACOVA_03557 0.19 -0.5 332,633 - BACOVA_03557 0.19 -0.0 332,639 + BACOVA_03557 0.19 -0.5 332,682 - BACOVA_03557 0.22 -3.1 332,683 + BACOVA_03557 0.22 -0.1 332,684 - BACOVA_03557 0.22 +0.4 332,718 + BACOVA_03557 0.24 -0.5 332,819 + BACOVA_03557 0.30 +0.6 332,820 - BACOVA_03557 0.30 +0.7 332,840 - BACOVA_03557 0.31 -0.1 332,840 - BACOVA_03557 0.31 +1.4 332,876 + BACOVA_03557 0.34 -0.4 332,876 + BACOVA_03557 0.34 -1.4 332,877 - BACOVA_03557 0.34 +0.1 332,879 - BACOVA_03557 0.34 -0.4 332,960 + BACOVA_03557 0.39 -0.6 332,961 - BACOVA_03557 0.39 +0.4 332,970 + BACOVA_03557 0.39 -0.4 332,972 + BACOVA_03557 0.39 +0.9 333,003 - BACOVA_03557 0.41 -0.5 333,076 + BACOVA_03557 0.46 +3.4 333,076 + BACOVA_03557 0.46 +0.5 333,098 - BACOVA_03557 0.47 +0.7 333,151 + BACOVA_03557 0.50 -0.7 333,191 + BACOVA_03557 0.53 -1.0 333,192 - BACOVA_03557 0.53 -0.0 333,192 - BACOVA_03557 0.53 +0.5 333,206 - BACOVA_03557 0.54 -0.1 333,228 - BACOVA_03557 0.55 -0.3 333,255 + BACOVA_03557 0.57 -0.3 333,284 - BACOVA_03557 0.59 -1.4 333,293 + BACOVA_03557 0.59 -0.9 333,293 + BACOVA_03557 0.59 +1.9 333,294 - BACOVA_03557 0.59 -1.3 333,324 - BACOVA_03557 0.61 -0.5 333,364 + BACOVA_03557 0.63 +1.0 333,365 - BACOVA_03557 0.63 +0.6 333,369 - BACOVA_03557 0.64 -0.6 333,410 - BACOVA_03557 0.66 +0.6 333,410 - BACOVA_03557 0.66 -0.0 333,413 + BACOVA_03557 0.66 -0.9 333,413 + BACOVA_03557 0.66 -0.9 333,498 - BACOVA_03557 0.72 +0.9 333,498 - BACOVA_03557 0.72 -1.4 333,500 - BACOVA_03557 0.72 +0.6 333,514 + BACOVA_03557 0.73 -0.3 333,514 + BACOVA_03557 0.73 +0.6 333,557 + BACOVA_03557 0.75 +0.8 333,558 - BACOVA_03557 0.75 -0.4 333,560 - BACOVA_03557 0.75 -0.6 333,588 - BACOVA_03557 0.77 -0.2 333,588 - BACOVA_03557 0.77 +0.1 333,640 + BACOVA_03557 0.80 +1.2 333,640 + BACOVA_03557 0.80 +0.9 333,776 - BACOVA_03557 0.88 -0.2 333,776 - BACOVA_03557 0.88 +0.3 333,879 - -0.8 333,926 - -0.8 333,963 - -1.8 333,968 - -0.1 333,968 - +0.9 333,974 - -0.2 334,023 - +1.5 334,024 + -0.0 334,025 - +0.9 334,050 + -0.3 334,050 + -1.1 334,051 - -0.5 334,076 - -0.5 334,091 - -1.3 334,091 - +0.2 334,091 - -1.2 334,093 - +0.3 334,133 + BACOVA_03558 0.13 +0.0 334,133 + BACOVA_03558 0.13 -0.5 334,136 + BACOVA_03558 0.13 +0.7 334,137 - BACOVA_03558 0.13 +0.3 334,137 - BACOVA_03558 0.13 -0.6 334,155 - BACOVA_03558 0.15 -0.2 334,156 + BACOVA_03558 0.15 -2.9 334,175 + BACOVA_03558 0.16 -0.6 334,202 + BACOVA_03558 0.19 +0.6 334,203 - BACOVA_03558 0.19 +1.0 334,241 + BACOVA_03558 0.22 +0.1 334,241 + BACOVA_03558 0.22 -0.5 334,242 - BACOVA_03558 0.22 -1.5 334,252 + BACOVA_03558 0.23 +0.7 334,265 - BACOVA_03558 0.24 -0.1 334,424 + BACOVA_03558 0.38 -0.7 334,548 - BACOVA_03558 0.49 -0.9 334,621 - BACOVA_03558 0.56 +1.6 334,621 - BACOVA_03558 0.56 -0.2 334,713 - BACOVA_03558 0.64 -1.8 334,762 + BACOVA_03558 0.68 -2.7 334,779 - BACOVA_03558 0.70 +0.4 334,787 - BACOVA_03558 0.71 +0.2 334,805 + BACOVA_03558 0.72 -0.7 334,805 + BACOVA_03558 0.72 +0.1 334,910 + BACOVA_03558 0.81 +0.6 334,910 + BACOVA_03558 0.81 +1.2 334,951 + BACOVA_03558 0.85 +0.5 334,951 + BACOVA_03558 0.85 +1.2 334,951 + BACOVA_03558 0.85 -1.2
Or see this region's nucleotide sequence