Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03497

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03495 and BACOVA_03496 are separated by 13 nucleotidesBACOVA_03496 and BACOVA_03497 are separated by 56 nucleotidesBACOVA_03497 and BACOVA_03498 overlap by 4 nucleotidesBACOVA_03498 and BACOVA_03499 are separated by 196 nucleotides BACOVA_03495: BACOVA_03495 - acetyltransferase, GNAT family, at 253,144 to 254,160 _03495 BACOVA_03496: BACOVA_03496 - hypothetical protein, at 254,174 to 255,091 _03496 BACOVA_03497: BACOVA_03497 - putative TIGR00659 family protein, at 255,148 to 255,843 _03497 BACOVA_03498: BACOVA_03498 - LrgA family protein, at 255,840 to 256,283 _03498 BACOVA_03499: BACOVA_03499 - phosphate acetyltransferase, at 256,480 to 257,499 _03499 Position (kb) 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 254.161 kb on - strandat 254.167 kb on - strandat 254.176 kb on - strandat 254.182 kb on + strandat 254.220 kb on + strandat 254.221 kb on - strandat 254.304 kb on + strand, within BACOVA_03496at 254.305 kb on - strand, within BACOVA_03496at 254.305 kb on - strand, within BACOVA_03496at 254.308 kb on + strand, within BACOVA_03496at 254.308 kb on + strand, within BACOVA_03496at 254.308 kb on + strand, within BACOVA_03496at 254.308 kb on + strand, within BACOVA_03496at 254.309 kb on - strand, within BACOVA_03496at 254.310 kb on + strand, within BACOVA_03496at 254.340 kb on + strand, within BACOVA_03496at 254.345 kb on - strand, within BACOVA_03496at 254.345 kb on - strand, within BACOVA_03496at 254.345 kb on - strand, within BACOVA_03496at 254.350 kb on + strand, within BACOVA_03496at 254.355 kb on + strand, within BACOVA_03496at 254.356 kb on - strand, within BACOVA_03496at 254.387 kb on + strand, within BACOVA_03496at 254.431 kb on + strand, within BACOVA_03496at 254.432 kb on - strand, within BACOVA_03496at 254.447 kb on - strand, within BACOVA_03496at 254.563 kb on + strand, within BACOVA_03496at 254.563 kb on + strand, within BACOVA_03496at 254.563 kb on + strand, within BACOVA_03496at 254.620 kb on + strand, within BACOVA_03496at 254.621 kb on - strand, within BACOVA_03496at 254.622 kb on + strand, within BACOVA_03496at 254.623 kb on - strand, within BACOVA_03496at 254.623 kb on - strand, within BACOVA_03496at 254.638 kb on - strand, within BACOVA_03496at 254.659 kb on + strand, within BACOVA_03496at 254.718 kb on + strand, within BACOVA_03496at 254.722 kb on + strand, within BACOVA_03496at 254.724 kb on + strand, within BACOVA_03496at 254.733 kb on + strand, within BACOVA_03496at 254.749 kb on + strand, within BACOVA_03496at 254.794 kb on + strand, within BACOVA_03496at 254.798 kb on - strand, within BACOVA_03496at 254.816 kb on - strand, within BACOVA_03496at 254.864 kb on + strand, within BACOVA_03496at 254.899 kb on + strand, within BACOVA_03496at 254.899 kb on + strand, within BACOVA_03496at 254.900 kb on - strand, within BACOVA_03496at 254.900 kb on - strand, within BACOVA_03496at 254.901 kb on + strand, within BACOVA_03496at 254.902 kb on - strand, within BACOVA_03496at 254.902 kb on - strand, within BACOVA_03496at 254.970 kb on + strand, within BACOVA_03496at 254.970 kb on + strand, within BACOVA_03496at 254.971 kb on - strand, within BACOVA_03496at 254.971 kb on - strand, within BACOVA_03496at 254.972 kb on + strand, within BACOVA_03496at 254.986 kb on + strand, within BACOVA_03496at 255.079 kb on + strandat 255.120 kb on + strandat 255.120 kb on + strandat 255.120 kb on + strandat 255.120 kb on + strandat 255.121 kb on - strandat 255.161 kb on - strandat 255.177 kb on + strandat 255.178 kb on - strandat 255.178 kb on - strandat 255.184 kb on + strandat 255.185 kb on - strandat 255.209 kb on - strandat 255.231 kb on - strand, within BACOVA_03497at 255.376 kb on + strand, within BACOVA_03497at 255.383 kb on - strand, within BACOVA_03497at 255.383 kb on - strand, within BACOVA_03497at 255.421 kb on - strand, within BACOVA_03497at 255.431 kb on - strand, within BACOVA_03497at 255.481 kb on + strand, within BACOVA_03497at 255.482 kb on - strand, within BACOVA_03497at 255.567 kb on + strand, within BACOVA_03497at 255.567 kb on + strand, within BACOVA_03497at 255.568 kb on - strand, within BACOVA_03497at 255.605 kb on + strand, within BACOVA_03497at 255.605 kb on + strand, within BACOVA_03497at 255.606 kb on - strand, within BACOVA_03497at 255.607 kb on + strand, within BACOVA_03497at 255.607 kb on + strand, within BACOVA_03497at 255.608 kb on - strand, within BACOVA_03497at 255.608 kb on - strand, within BACOVA_03497at 255.613 kb on + strand, within BACOVA_03497at 255.669 kb on + strand, within BACOVA_03497at 255.670 kb on - strand, within BACOVA_03497at 255.672 kb on + strand, within BACOVA_03497at 255.672 kb on + strand, within BACOVA_03497at 255.673 kb on - strand, within BACOVA_03497at 255.674 kb on + strand, within BACOVA_03497at 255.715 kb on + strand, within BACOVA_03497at 255.716 kb on - strand, within BACOVA_03497at 255.716 kb on - strand, within BACOVA_03497at 255.736 kb on + strand, within BACOVA_03497at 255.736 kb on + strand, within BACOVA_03497at 255.736 kb on + strand, within BACOVA_03497at 255.738 kb on + strand, within BACOVA_03497at 255.739 kb on - strand, within BACOVA_03497at 255.745 kb on + strand, within BACOVA_03497at 255.745 kb on + strand, within BACOVA_03497at 255.745 kb on + strand, within BACOVA_03497at 255.745 kb on + strand, within BACOVA_03497at 255.746 kb on - strand, within BACOVA_03497at 255.746 kb on - strand, within BACOVA_03497at 255.804 kb on + strandat 255.833 kb on - strandat 255.875 kb on + strandat 255.876 kb on - strandat 255.883 kb on - strandat 255.973 kb on - strand, within BACOVA_03498at 255.973 kb on - strand, within BACOVA_03498at 255.993 kb on + strand, within BACOVA_03498at 255.993 kb on + strand, within BACOVA_03498at 255.994 kb on - strand, within BACOVA_03498at 256.016 kb on + strand, within BACOVA_03498at 256.016 kb on + strand, within BACOVA_03498at 256.016 kb on + strand, within BACOVA_03498at 256.016 kb on + strand, within BACOVA_03498at 256.017 kb on - strand, within BACOVA_03498at 256.017 kb on - strand, within BACOVA_03498at 256.017 kb on - strand, within BACOVA_03498at 256.017 kb on - strand, within BACOVA_03498at 256.017 kb on - strand, within BACOVA_03498at 256.049 kb on + strand, within BACOVA_03498at 256.050 kb on - strand, within BACOVA_03498at 256.067 kb on + strand, within BACOVA_03498at 256.067 kb on + strand, within BACOVA_03498at 256.135 kb on - strand, within BACOVA_03498at 256.143 kb on + strand, within BACOVA_03498at 256.149 kb on - strand, within BACOVA_03498at 256.159 kb on - strand, within BACOVA_03498at 256.159 kb on - strand, within BACOVA_03498at 256.215 kb on - strand, within BACOVA_03498at 256.225 kb on + strand, within BACOVA_03498at 256.226 kb on - strand, within BACOVA_03498at 256.231 kb on - strand, within BACOVA_03498at 256.233 kb on + strand, within BACOVA_03498at 256.278 kb on + strandat 256.279 kb on - strandat 256.283 kb on + strandat 256.284 kb on - strandat 256.287 kb on + strandat 256.460 kb on + strandat 256.460 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
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254,161 - -2.2
254,167 - -0.1
254,176 - +0.7
254,182 + +0.6
254,220 + +1.1
254,221 - +1.7
254,304 + BACOVA_03496 0.14 +0.4
254,305 - BACOVA_03496 0.14 +0.7
254,305 - BACOVA_03496 0.14 +0.4
254,308 + BACOVA_03496 0.15 +0.6
254,308 + BACOVA_03496 0.15 +0.8
254,308 + BACOVA_03496 0.15 +0.7
254,308 + BACOVA_03496 0.15 +0.2
254,309 - BACOVA_03496 0.15 +0.1
254,310 + BACOVA_03496 0.15 +0.9
254,340 + BACOVA_03496 0.18 -0.7
254,345 - BACOVA_03496 0.19 -0.1
254,345 - BACOVA_03496 0.19 +0.9
254,345 - BACOVA_03496 0.19 -0.9
254,350 + BACOVA_03496 0.19 -0.4
254,355 + BACOVA_03496 0.20 -1.6
254,356 - BACOVA_03496 0.20 +0.5
254,387 + BACOVA_03496 0.23 +0.1
254,431 + BACOVA_03496 0.28 +1.3
254,432 - BACOVA_03496 0.28 -0.1
254,447 - BACOVA_03496 0.30 -0.6
254,563 + BACOVA_03496 0.42 +0.2
254,563 + BACOVA_03496 0.42 -0.3
254,563 + BACOVA_03496 0.42 -1.7
254,620 + BACOVA_03496 0.49 +0.4
254,621 - BACOVA_03496 0.49 +2.9
254,622 + BACOVA_03496 0.49 +0.1
254,623 - BACOVA_03496 0.49 +0.2
254,623 - BACOVA_03496 0.49 +0.4
254,638 - BACOVA_03496 0.51 +0.5
254,659 + BACOVA_03496 0.53 +0.5
254,718 + BACOVA_03496 0.59 +0.6
254,722 + BACOVA_03496 0.60 +0.2
254,724 + BACOVA_03496 0.60 -0.3
254,733 + BACOVA_03496 0.61 -0.2
254,749 + BACOVA_03496 0.63 -0.2
254,794 + BACOVA_03496 0.68 -0.7
254,798 - BACOVA_03496 0.68 -0.5
254,816 - BACOVA_03496 0.70 +1.0
254,864 + BACOVA_03496 0.75 +0.7
254,899 + BACOVA_03496 0.79 -0.1
254,899 + BACOVA_03496 0.79 +0.4
254,900 - BACOVA_03496 0.79 +0.1
254,900 - BACOVA_03496 0.79 +0.9
254,901 + BACOVA_03496 0.79 +0.7
254,902 - BACOVA_03496 0.79 +1.1
254,902 - BACOVA_03496 0.79 +0.6
254,970 + BACOVA_03496 0.87 -0.4
254,970 + BACOVA_03496 0.87 +0.1
254,971 - BACOVA_03496 0.87 -2.0
254,971 - BACOVA_03496 0.87 +0.4
254,972 + BACOVA_03496 0.87 +0.2
254,986 + BACOVA_03496 0.88 -0.2
255,079 + -1.4
255,120 + +0.4
255,120 + -0.9
255,120 + -3.1
255,120 + +0.0
255,121 - +0.3
255,161 - -1.1
255,177 + -0.1
255,178 - +0.0
255,178 - +0.8
255,184 + +0.2
255,185 - -0.3
255,209 - -0.4
255,231 - BACOVA_03497 0.12 +0.1
255,376 + BACOVA_03497 0.33 +0.7
255,383 - BACOVA_03497 0.34 -0.2
255,383 - BACOVA_03497 0.34 -0.9
255,421 - BACOVA_03497 0.39 -0.7
255,431 - BACOVA_03497 0.41 +0.3
255,481 + BACOVA_03497 0.48 +0.7
255,482 - BACOVA_03497 0.48 -1.0
255,567 + BACOVA_03497 0.60 -0.5
255,567 + BACOVA_03497 0.60 -0.9
255,568 - BACOVA_03497 0.60 +0.0
255,605 + BACOVA_03497 0.66 +0.4
255,605 + BACOVA_03497 0.66 +0.5
255,606 - BACOVA_03497 0.66 +0.3
255,607 + BACOVA_03497 0.66 -0.1
255,607 + BACOVA_03497 0.66 -0.2
255,608 - BACOVA_03497 0.66 -0.5
255,608 - BACOVA_03497 0.66 -0.3
255,613 + BACOVA_03497 0.67 -0.0
255,669 + BACOVA_03497 0.75 -0.6
255,670 - BACOVA_03497 0.75 -1.7
255,672 + BACOVA_03497 0.75 -0.1
255,672 + BACOVA_03497 0.75 -0.3
255,673 - BACOVA_03497 0.75 -2.2
255,674 + BACOVA_03497 0.76 +0.2
255,715 + BACOVA_03497 0.81 +1.7
255,716 - BACOVA_03497 0.82 -0.3
255,716 - BACOVA_03497 0.82 +1.7
255,736 + BACOVA_03497 0.84 +1.1
255,736 + BACOVA_03497 0.84 +0.1
255,736 + BACOVA_03497 0.84 -1.1
255,738 + BACOVA_03497 0.85 +1.7
255,739 - BACOVA_03497 0.85 -1.6
255,745 + BACOVA_03497 0.86 +0.2
255,745 + BACOVA_03497 0.86 +1.0
255,745 + BACOVA_03497 0.86 -0.1
255,745 + BACOVA_03497 0.86 -0.5
255,746 - BACOVA_03497 0.86 +0.2
255,746 - BACOVA_03497 0.86 +0.2
255,804 + -0.0
255,833 - +0.9
255,875 + -1.8
255,876 - +0.8
255,883 - +1.1
255,973 - BACOVA_03498 0.30 -0.1
255,973 - BACOVA_03498 0.30 -1.7
255,993 + BACOVA_03498 0.34 -0.2
255,993 + BACOVA_03498 0.34 +0.1
255,994 - BACOVA_03498 0.35 -0.9
256,016 + BACOVA_03498 0.40 -1.4
256,016 + BACOVA_03498 0.40 +2.1
256,016 + BACOVA_03498 0.40 +0.2
256,016 + BACOVA_03498 0.40 +0.3
256,017 - BACOVA_03498 0.40 +0.5
256,017 - BACOVA_03498 0.40 -0.1
256,017 - BACOVA_03498 0.40 -0.1
256,017 - BACOVA_03498 0.40 +0.2
256,017 - BACOVA_03498 0.40 +0.4
256,049 + BACOVA_03498 0.47 +1.0
256,050 - BACOVA_03498 0.47 -0.4
256,067 + BACOVA_03498 0.51 +0.1
256,067 + BACOVA_03498 0.51 -0.4
256,135 - BACOVA_03498 0.66 +1.3
256,143 + BACOVA_03498 0.68 +0.8
256,149 - BACOVA_03498 0.70 -0.8
256,159 - BACOVA_03498 0.72 -2.0
256,159 - BACOVA_03498 0.72 -2.3
256,215 - BACOVA_03498 0.84 +1.7
256,225 + BACOVA_03498 0.87 -0.1
256,226 - BACOVA_03498 0.87 +0.3
256,231 - BACOVA_03498 0.88 -0.8
256,233 + BACOVA_03498 0.89 -0.8
256,278 + +0.3
256,279 - +0.1
256,283 + -1.0
256,284 - +0.7
256,287 + +1.0
256,460 + +1.1
256,460 + +0.3

Or see this region's nucleotide sequence