Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03341

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03340 and BACOVA_03341 are separated by 23 nucleotidesBACOVA_03341 and BACOVA_03342 are separated by 73 nucleotides BACOVA_03340: BACOVA_03340 - SusD family protein, at 32,481 to 34,400 _03340 BACOVA_03341: BACOVA_03341 - glycosyl hydrolase family 76, at 34,424 to 35,746 _03341 BACOVA_03342: BACOVA_03342 - hypothetical protein, at 35,820 to 36,914 _03342 Position (kb) 34 35 36Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 33.443 kb on - strand, within BACOVA_03340at 33.539 kb on + strand, within BACOVA_03340at 33.561 kb on + strand, within BACOVA_03340at 33.561 kb on + strand, within BACOVA_03340at 33.561 kb on + strand, within BACOVA_03340at 33.562 kb on - strand, within BACOVA_03340at 33.562 kb on - strand, within BACOVA_03340at 33.563 kb on - strand, within BACOVA_03340at 33.564 kb on - strand, within BACOVA_03340at 33.564 kb on - strand, within BACOVA_03340at 33.573 kb on - strand, within BACOVA_03340at 33.601 kb on + strand, within BACOVA_03340at 33.602 kb on - strand, within BACOVA_03340at 33.609 kb on + strand, within BACOVA_03340at 33.610 kb on - strand, within BACOVA_03340at 33.635 kb on + strand, within BACOVA_03340at 33.647 kb on + strand, within BACOVA_03340at 33.691 kb on - strand, within BACOVA_03340at 33.694 kb on + strand, within BACOVA_03340at 33.710 kb on + strand, within BACOVA_03340at 33.711 kb on - strand, within BACOVA_03340at 33.738 kb on - strand, within BACOVA_03340at 33.743 kb on - strand, within BACOVA_03340at 33.743 kb on - strand, within BACOVA_03340at 33.744 kb on + strand, within BACOVA_03340at 33.744 kb on + strand, within BACOVA_03340at 33.745 kb on - strand, within BACOVA_03340at 33.771 kb on + strand, within BACOVA_03340at 33.771 kb on + strand, within BACOVA_03340at 33.772 kb on - strand, within BACOVA_03340at 33.772 kb on - strand, within BACOVA_03340at 33.772 kb on - strand, within BACOVA_03340at 33.800 kb on - strand, within BACOVA_03340at 33.800 kb on - strand, within BACOVA_03340at 33.806 kb on + strand, within BACOVA_03340at 33.816 kb on - strand, within BACOVA_03340at 33.849 kb on + strand, within BACOVA_03340at 33.850 kb on - strand, within BACOVA_03340at 33.850 kb on - strand, within BACOVA_03340at 33.850 kb on - strand, within BACOVA_03340at 33.851 kb on + strand, within BACOVA_03340at 33.851 kb on + strand, within BACOVA_03340at 33.853 kb on + strand, within BACOVA_03340at 33.854 kb on - strand, within BACOVA_03340at 33.857 kb on - strand, within BACOVA_03340at 33.867 kb on + strand, within BACOVA_03340at 33.896 kb on + strand, within BACOVA_03340at 33.908 kb on + strand, within BACOVA_03340at 33.909 kb on - strand, within BACOVA_03340at 33.909 kb on - strand, within BACOVA_03340at 33.915 kb on - strand, within BACOVA_03340at 33.921 kb on + strand, within BACOVA_03340at 33.922 kb on - strand, within BACOVA_03340at 33.993 kb on - strand, within BACOVA_03340at 34.059 kb on + strand, within BACOVA_03340at 34.059 kb on + strand, within BACOVA_03340at 34.130 kb on + strand, within BACOVA_03340at 34.131 kb on - strand, within BACOVA_03340at 34.228 kb on + strandat 34.237 kb on - strandat 34.237 kb on - strandat 34.317 kb on - strandat 34.345 kb on + strandat 34.364 kb on + strandat 34.364 kb on + strandat 34.389 kb on - strandat 34.398 kb on + strandat 34.399 kb on - strandat 34.403 kb on - strandat 34.410 kb on - strandat 34.437 kb on - strandat 34.477 kb on + strandat 34.478 kb on - strandat 34.498 kb on + strandat 34.514 kb on + strandat 34.515 kb on - strandat 34.517 kb on - strandat 34.546 kb on + strandat 34.546 kb on + strandat 34.617 kb on - strand, within BACOVA_03341at 34.635 kb on - strand, within BACOVA_03341at 34.636 kb on + strand, within BACOVA_03341at 34.637 kb on - strand, within BACOVA_03341at 34.657 kb on + strand, within BACOVA_03341at 34.716 kb on - strand, within BACOVA_03341at 34.717 kb on + strand, within BACOVA_03341at 34.717 kb on + strand, within BACOVA_03341at 34.760 kb on + strand, within BACOVA_03341at 34.761 kb on - strand, within BACOVA_03341at 34.805 kb on + strand, within BACOVA_03341at 34.805 kb on + strand, within BACOVA_03341at 34.806 kb on - strand, within BACOVA_03341at 34.828 kb on + strand, within BACOVA_03341at 34.832 kb on - strand, within BACOVA_03341at 34.852 kb on + strand, within BACOVA_03341at 34.857 kb on - strand, within BACOVA_03341at 34.866 kb on + strand, within BACOVA_03341at 34.866 kb on + strand, within BACOVA_03341at 34.867 kb on - strand, within BACOVA_03341at 34.867 kb on - strand, within BACOVA_03341at 34.923 kb on - strand, within BACOVA_03341at 34.956 kb on + strand, within BACOVA_03341at 34.962 kb on - strand, within BACOVA_03341at 34.995 kb on - strand, within BACOVA_03341at 35.026 kb on + strand, within BACOVA_03341at 35.027 kb on - strand, within BACOVA_03341at 35.048 kb on - strand, within BACOVA_03341at 35.083 kb on + strand, within BACOVA_03341at 35.084 kb on - strand, within BACOVA_03341at 35.133 kb on - strand, within BACOVA_03341at 35.146 kb on + strand, within BACOVA_03341at 35.186 kb on - strand, within BACOVA_03341at 35.186 kb on - strand, within BACOVA_03341at 35.188 kb on + strand, within BACOVA_03341at 35.188 kb on + strand, within BACOVA_03341at 35.192 kb on + strand, within BACOVA_03341at 35.234 kb on + strand, within BACOVA_03341at 35.353 kb on - strand, within BACOVA_03341at 35.385 kb on + strand, within BACOVA_03341at 35.393 kb on + strand, within BACOVA_03341at 35.395 kb on + strand, within BACOVA_03341at 35.474 kb on + strand, within BACOVA_03341at 35.513 kb on - strand, within BACOVA_03341at 35.538 kb on - strand, within BACOVA_03341at 35.538 kb on - strand, within BACOVA_03341at 35.538 kb on - strand, within BACOVA_03341at 35.580 kb on + strand, within BACOVA_03341at 35.597 kb on - strand, within BACOVA_03341at 35.603 kb on - strand, within BACOVA_03341at 35.617 kb on + strandat 35.635 kb on + strandat 35.654 kb on + strandat 35.660 kb on - strandat 35.670 kb on + strandat 35.671 kb on - strandat 35.680 kb on + strandat 35.680 kb on + strandat 35.681 kb on - strandat 35.681 kb on - strandat 35.693 kb on + strandat 35.693 kb on + strandat 35.694 kb on - strandat 35.694 kb on - strandat 35.694 kb on - strandat 35.694 kb on - strandat 35.741 kb on - strandat 35.770 kb on + strandat 35.777 kb on + strandat 35.785 kb on - strandat 35.808 kb on + strandat 35.808 kb on + strandat 35.808 kb on + strandat 35.815 kb on + strandat 35.871 kb on + strandat 35.874 kb on - strandat 35.897 kb on + strandat 35.898 kb on - strandat 35.898 kb on - strandat 35.898 kb on - strandat 35.901 kb on + strandat 35.902 kb on - strandat 35.902 kb on - strandat 35.969 kb on + strand, within BACOVA_03342at 35.969 kb on + strand, within BACOVA_03342at 35.971 kb on - strand, within BACOVA_03342at 36.019 kb on + strand, within BACOVA_03342at 36.041 kb on - strand, within BACOVA_03342at 36.055 kb on - strand, within BACOVA_03342at 36.117 kb on - strand, within BACOVA_03342at 36.208 kb on - strand, within BACOVA_03342at 36.224 kb on + strand, within BACOVA_03342at 36.225 kb on - strand, within BACOVA_03342at 36.235 kb on - strand, within BACOVA_03342at 36.319 kb on - strand, within BACOVA_03342at 36.337 kb on - strand, within BACOVA_03342at 36.337 kb on - strand, within BACOVA_03342at 36.359 kb on + strand, within BACOVA_03342at 36.376 kb on - strand, within BACOVA_03342at 36.376 kb on - strand, within BACOVA_03342at 36.383 kb on + strand, within BACOVA_03342at 36.383 kb on + strand, within BACOVA_03342at 36.402 kb on + strand, within BACOVA_03342at 36.495 kb on + strand, within BACOVA_03342at 36.496 kb on - strand, within BACOVA_03342at 36.496 kb on - strand, within BACOVA_03342at 36.594 kb on + strand, within BACOVA_03342at 36.595 kb on - strand, within BACOVA_03342at 36.595 kb on - strand, within BACOVA_03342at 36.597 kb on - strand, within BACOVA_03342at 36.618 kb on + strand, within BACOVA_03342at 36.620 kb on + strand, within BACOVA_03342at 36.649 kb on - strand, within BACOVA_03342at 36.650 kb on + strand, within BACOVA_03342at 36.650 kb on + strand, within BACOVA_03342at 36.651 kb on - strand, within BACOVA_03342at 36.665 kb on + strand, within BACOVA_03342at 36.666 kb on - strand, within BACOVA_03342at 36.666 kb on - strand, within BACOVA_03342at 36.666 kb on - strand, within BACOVA_03342at 36.739 kb on - strand, within BACOVA_03342

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
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33,443 - BACOVA_03340 0.50 +1.2
33,539 + BACOVA_03340 0.55 -0.6
33,561 + BACOVA_03340 0.56 -2.5
33,561 + BACOVA_03340 0.56 -2.3
33,561 + BACOVA_03340 0.56 -3.1
33,562 - BACOVA_03340 0.56 +0.1
33,562 - BACOVA_03340 0.56 +0.2
33,563 - BACOVA_03340 0.56 +0.5
33,564 - BACOVA_03340 0.56 -1.3
33,564 - BACOVA_03340 0.56 +0.5
33,573 - BACOVA_03340 0.57 -0.2
33,601 + BACOVA_03340 0.58 -1.3
33,602 - BACOVA_03340 0.58 +0.9
33,609 + BACOVA_03340 0.59 +1.2
33,610 - BACOVA_03340 0.59 -0.3
33,635 + BACOVA_03340 0.60 -2.2
33,647 + BACOVA_03340 0.61 -2.3
33,691 - BACOVA_03340 0.63 +1.2
33,694 + BACOVA_03340 0.63 -1.3
33,710 + BACOVA_03340 0.64 -1.9
33,711 - BACOVA_03340 0.64 +0.5
33,738 - BACOVA_03340 0.65 -0.7
33,743 - BACOVA_03340 0.66 +0.6
33,743 - BACOVA_03340 0.66 +0.4
33,744 + BACOVA_03340 0.66 -1.4
33,744 + BACOVA_03340 0.66 -1.7
33,745 - BACOVA_03340 0.66 -0.7
33,771 + BACOVA_03340 0.67 -1.5
33,771 + BACOVA_03340 0.67 -2.8
33,772 - BACOVA_03340 0.67 +0.6
33,772 - BACOVA_03340 0.67 +1.6
33,772 - BACOVA_03340 0.67 +0.3
33,800 - BACOVA_03340 0.69 +0.4
33,800 - BACOVA_03340 0.69 -0.3
33,806 + BACOVA_03340 0.69 -2.2
33,816 - BACOVA_03340 0.70 +0.8
33,849 + BACOVA_03340 0.71 -1.7
33,850 - BACOVA_03340 0.71 -1.1
33,850 - BACOVA_03340 0.71 -0.1
33,850 - BACOVA_03340 0.71 -0.4
33,851 + BACOVA_03340 0.71 -3.1
33,851 + BACOVA_03340 0.71 -2.9
33,853 + BACOVA_03340 0.71 -2.3
33,854 - BACOVA_03340 0.72 +0.6
33,857 - BACOVA_03340 0.72 +0.5
33,867 + BACOVA_03340 0.72 +0.1
33,896 + BACOVA_03340 0.74 -2.6
33,908 + BACOVA_03340 0.74 -2.2
33,909 - BACOVA_03340 0.74 -1.1
33,909 - BACOVA_03340 0.74 -0.2
33,915 - BACOVA_03340 0.75 +0.5
33,921 + BACOVA_03340 0.75 -1.7
33,922 - BACOVA_03340 0.75 -0.0
33,993 - BACOVA_03340 0.79 +0.1
34,059 + BACOVA_03340 0.82 +0.1
34,059 + BACOVA_03340 0.82 -0.2
34,130 + BACOVA_03340 0.86 -1.5
34,131 - BACOVA_03340 0.86 -0.9
34,228 + -4.1
34,237 - -0.1
34,237 - +0.1
34,317 - -1.3
34,345 + -1.1
34,364 + -1.5
34,364 + -2.2
34,389 - +0.0
34,398 + -1.3
34,399 - +0.3
34,403 - -0.3
34,410 - -0.2
34,437 - +0.3
34,477 + -0.9
34,478 - +0.4
34,498 + +0.2
34,514 + -1.8
34,515 - +1.7
34,517 - +0.2
34,546 + -0.9
34,546 + -1.3
34,617 - BACOVA_03341 0.15 +0.6
34,635 - BACOVA_03341 0.16 +1.0
34,636 + BACOVA_03341 0.16 +0.4
34,637 - BACOVA_03341 0.16 -0.5
34,657 + BACOVA_03341 0.18 -3.7
34,716 - BACOVA_03341 0.22 -0.1
34,717 + BACOVA_03341 0.22 -1.7
34,717 + BACOVA_03341 0.22 -2.1
34,760 + BACOVA_03341 0.25 +0.7
34,761 - BACOVA_03341 0.25 -0.6
34,805 + BACOVA_03341 0.29 -2.4
34,805 + BACOVA_03341 0.29 -0.4
34,806 - BACOVA_03341 0.29 +0.6
34,828 + BACOVA_03341 0.31 -0.3
34,832 - BACOVA_03341 0.31 +0.2
34,852 + BACOVA_03341 0.32 -2.7
34,857 - BACOVA_03341 0.33 -2.6
34,866 + BACOVA_03341 0.33 +0.2
34,866 + BACOVA_03341 0.33 +0.1
34,867 - BACOVA_03341 0.33 +0.9
34,867 - BACOVA_03341 0.33 -0.3
34,923 - BACOVA_03341 0.38 +1.2
34,956 + BACOVA_03341 0.40 -2.1
34,962 - BACOVA_03341 0.41 -0.5
34,995 - BACOVA_03341 0.43 +1.1
35,026 + BACOVA_03341 0.46 -1.4
35,027 - BACOVA_03341 0.46 -0.2
35,048 - BACOVA_03341 0.47 -0.3
35,083 + BACOVA_03341 0.50 -0.5
35,084 - BACOVA_03341 0.50 -0.3
35,133 - BACOVA_03341 0.54 -0.3
35,146 + BACOVA_03341 0.55 -2.7
35,186 - BACOVA_03341 0.58 +0.0
35,186 - BACOVA_03341 0.58 -0.3
35,188 + BACOVA_03341 0.58 -2.0
35,188 + BACOVA_03341 0.58 -1.9
35,192 + BACOVA_03341 0.58 -1.6
35,234 + BACOVA_03341 0.61 -2.9
35,353 - BACOVA_03341 0.70 -0.5
35,385 + BACOVA_03341 0.73 -1.5
35,393 + BACOVA_03341 0.73 -0.1
35,395 + BACOVA_03341 0.73 -1.0
35,474 + BACOVA_03341 0.79 -1.9
35,513 - BACOVA_03341 0.82 +0.6
35,538 - BACOVA_03341 0.84 +1.3
35,538 - BACOVA_03341 0.84 -0.9
35,538 - BACOVA_03341 0.84 +1.1
35,580 + BACOVA_03341 0.87 +0.3
35,597 - BACOVA_03341 0.89 +0.8
35,603 - BACOVA_03341 0.89 +0.5
35,617 + -1.6
35,635 + -1.5
35,654 + -1.4
35,660 - +0.1
35,670 + -2.3
35,671 - +0.8
35,680 + -2.5
35,680 + -1.1
35,681 - -0.9
35,681 - -0.7
35,693 + -1.7
35,693 + -4.8
35,694 - -0.1
35,694 - +0.9
35,694 - -0.7
35,694 - +0.8
35,741 - -0.3
35,770 + -0.7
35,777 + -1.1
35,785 - +1.7
35,808 + -1.5
35,808 + -0.9
35,808 + -2.3
35,815 + -0.7
35,871 + -0.7
35,874 - +0.5
35,897 + -1.5
35,898 - -0.4
35,898 - +0.0
35,898 - +1.2
35,901 + -0.3
35,902 - +0.3
35,902 - -0.1
35,969 + BACOVA_03342 0.14 -2.1
35,969 + BACOVA_03342 0.14 -1.4
35,971 - BACOVA_03342 0.14 +0.7
36,019 + BACOVA_03342 0.18 -2.2
36,041 - BACOVA_03342 0.20 +0.4
36,055 - BACOVA_03342 0.21 -1.2
36,117 - BACOVA_03342 0.27 -0.1
36,208 - BACOVA_03342 0.35 -0.4
36,224 + BACOVA_03342 0.37 -0.9
36,225 - BACOVA_03342 0.37 +0.1
36,235 - BACOVA_03342 0.38 +0.0
36,319 - BACOVA_03342 0.46 -0.3
36,337 - BACOVA_03342 0.47 +0.2
36,337 - BACOVA_03342 0.47 -1.0
36,359 + BACOVA_03342 0.49 -1.4
36,376 - BACOVA_03342 0.51 +0.2
36,376 - BACOVA_03342 0.51 +0.9
36,383 + BACOVA_03342 0.51 -0.9
36,383 + BACOVA_03342 0.51 -1.3
36,402 + BACOVA_03342 0.53 -3.1
36,495 + BACOVA_03342 0.62 -2.5
36,496 - BACOVA_03342 0.62 +0.6
36,496 - BACOVA_03342 0.62 -0.5
36,594 + BACOVA_03342 0.71 -0.7
36,595 - BACOVA_03342 0.71 +1.1
36,595 - BACOVA_03342 0.71 -0.5
36,597 - BACOVA_03342 0.71 -0.2
36,618 + BACOVA_03342 0.73 -0.6
36,620 + BACOVA_03342 0.73 -1.8
36,649 - BACOVA_03342 0.76 +1.2
36,650 + BACOVA_03342 0.76 -1.3
36,650 + BACOVA_03342 0.76 -2.9
36,651 - BACOVA_03342 0.76 -0.3
36,665 + BACOVA_03342 0.77 -1.9
36,666 - BACOVA_03342 0.77 -0.4
36,666 - BACOVA_03342 0.77 +1.1
36,666 - BACOVA_03342 0.77 -0.4
36,739 - BACOVA_03342 0.84 +0.4

Or see this region's nucleotide sequence