Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02461

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02460 and BACOVA_02461 are separated by 1 nucleotidesBACOVA_02461 and BACOVA_02462 overlap by 4 nucleotides BACOVA_02460: BACOVA_02460 - 4Fe-4S binding domain protein, at 222,332 to 223,480 _02460 BACOVA_02461: BACOVA_02461 - hypothetical protein, at 223,482 to 224,564 _02461 BACOVA_02462: BACOVA_02462 - hypothetical protein, at 224,561 to 225,760 _02462 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2at 222.814 kb on + strand, within BACOVA_02460at 222.850 kb on - strand, within BACOVA_02460at 222.850 kb on - strand, within BACOVA_02460at 223.039 kb on + strand, within BACOVA_02460at 223.039 kb on + strand, within BACOVA_02460at 223.039 kb on + strand, within BACOVA_02460at 223.040 kb on - strand, within BACOVA_02460at 223.040 kb on - strand, within BACOVA_02460at 223.046 kb on - strand, within BACOVA_02460at 223.051 kb on + strand, within BACOVA_02460at 223.052 kb on - strand, within BACOVA_02460at 223.059 kb on + strand, within BACOVA_02460at 223.065 kb on + strand, within BACOVA_02460at 223.065 kb on + strand, within BACOVA_02460at 223.070 kb on + strand, within BACOVA_02460at 223.118 kb on - strand, within BACOVA_02460at 223.121 kb on + strand, within BACOVA_02460at 223.191 kb on - strand, within BACOVA_02460at 223.226 kb on - strand, within BACOVA_02460at 223.226 kb on - strand, within BACOVA_02460at 223.271 kb on + strand, within BACOVA_02460at 223.282 kb on + strand, within BACOVA_02460at 223.294 kb on - strand, within BACOVA_02460at 223.294 kb on - strand, within BACOVA_02460at 223.294 kb on - strand, within BACOVA_02460at 223.341 kb on + strand, within BACOVA_02460at 223.342 kb on - strand, within BACOVA_02460at 223.448 kb on - strandat 223.482 kb on - strandat 223.490 kb on - strandat 223.490 kb on - strandat 223.522 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.557 kb on + strandat 223.558 kb on - strandat 223.576 kb on - strandat 223.592 kb on - strand, within BACOVA_02461at 223.597 kb on - strand, within BACOVA_02461at 223.613 kb on - strand, within BACOVA_02461at 223.616 kb on + strand, within BACOVA_02461at 223.617 kb on - strand, within BACOVA_02461at 223.617 kb on - strand, within BACOVA_02461at 223.617 kb on - strand, within BACOVA_02461at 223.628 kb on + strand, within BACOVA_02461at 223.629 kb on - strand, within BACOVA_02461at 223.629 kb on - strand, within BACOVA_02461at 223.629 kb on - strand, within BACOVA_02461at 223.659 kb on - strand, within BACOVA_02461at 223.659 kb on - strand, within BACOVA_02461at 223.746 kb on - strand, within BACOVA_02461at 223.757 kb on - strand, within BACOVA_02461at 223.757 kb on - strand, within BACOVA_02461at 223.779 kb on - strand, within BACOVA_02461at 223.806 kb on + strand, within BACOVA_02461at 223.807 kb on - strand, within BACOVA_02461at 223.812 kb on - strand, within BACOVA_02461at 223.814 kb on - strand, within BACOVA_02461at 223.908 kb on - strand, within BACOVA_02461at 223.915 kb on - strand, within BACOVA_02461at 223.922 kb on + strand, within BACOVA_02461at 223.923 kb on - strand, within BACOVA_02461at 223.923 kb on - strand, within BACOVA_02461at 223.976 kb on - strand, within BACOVA_02461at 223.995 kb on - strand, within BACOVA_02461at 224.041 kb on + strand, within BACOVA_02461at 224.041 kb on + strand, within BACOVA_02461at 224.081 kb on - strand, within BACOVA_02461at 224.108 kb on - strand, within BACOVA_02461at 224.112 kb on - strand, within BACOVA_02461at 224.150 kb on - strand, within BACOVA_02461at 224.150 kb on - strand, within BACOVA_02461at 224.150 kb on - strand, within BACOVA_02461at 224.193 kb on - strand, within BACOVA_02461at 224.193 kb on - strand, within BACOVA_02461at 224.197 kb on - strand, within BACOVA_02461at 224.231 kb on - strand, within BACOVA_02461at 224.387 kb on - strand, within BACOVA_02461at 224.433 kb on - strand, within BACOVA_02461at 224.460 kb on - strandat 224.460 kb on - strandat 224.465 kb on - strandat 224.541 kb on - strandat 224.541 kb on - strandat 224.541 kb on - strandat 224.555 kb on - strandat 224.555 kb on - strandat 224.575 kb on - strandat 224.610 kb on + strandat 224.614 kb on - strandat 224.617 kb on - strandat 224.617 kb on - strandat 224.620 kb on - strandat 224.665 kb on + strandat 224.666 kb on - strandat 224.666 kb on - strandat 224.670 kb on - strandat 224.674 kb on - strandat 224.674 kb on - strandat 224.674 kb on - strandat 224.706 kb on - strand, within BACOVA_02462at 224.708 kb on + strand, within BACOVA_02462at 224.727 kb on - strand, within BACOVA_02462at 224.756 kb on - strand, within BACOVA_02462at 224.767 kb on - strand, within BACOVA_02462at 224.787 kb on - strand, within BACOVA_02462at 224.787 kb on - strand, within BACOVA_02462at 224.787 kb on - strand, within BACOVA_02462at 224.792 kb on - strand, within BACOVA_02462at 224.826 kb on - strand, within BACOVA_02462at 224.827 kb on + strand, within BACOVA_02462at 224.830 kb on + strand, within BACOVA_02462at 224.831 kb on - strand, within BACOVA_02462at 224.833 kb on - strand, within BACOVA_02462at 224.840 kb on - strand, within BACOVA_02462at 224.870 kb on + strand, within BACOVA_02462at 224.882 kb on - strand, within BACOVA_02462at 224.941 kb on - strand, within BACOVA_02462at 224.941 kb on - strand, within BACOVA_02462at 224.976 kb on + strand, within BACOVA_02462at 224.981 kb on - strand, within BACOVA_02462at 225.005 kb on - strand, within BACOVA_02462at 225.007 kb on - strand, within BACOVA_02462at 225.007 kb on - strand, within BACOVA_02462at 225.007 kb on - strand, within BACOVA_02462at 225.063 kb on - strand, within BACOVA_02462at 225.105 kb on - strand, within BACOVA_02462at 225.107 kb on - strand, within BACOVA_02462at 225.107 kb on - strand, within BACOVA_02462at 225.137 kb on - strand, within BACOVA_02462at 225.193 kb on - strand, within BACOVA_02462at 225.202 kb on - strand, within BACOVA_02462at 225.202 kb on - strand, within BACOVA_02462at 225.263 kb on + strand, within BACOVA_02462at 225.264 kb on - strand, within BACOVA_02462at 225.347 kb on - strand, within BACOVA_02462at 225.353 kb on + strand, within BACOVA_02462at 225.356 kb on - strand, within BACOVA_02462at 225.358 kb on + strand, within BACOVA_02462at 225.359 kb on - strand, within BACOVA_02462at 225.363 kb on - strand, within BACOVA_02462at 225.396 kb on - strand, within BACOVA_02462at 225.433 kb on - strand, within BACOVA_02462at 225.504 kb on - strand, within BACOVA_02462at 225.504 kb on - strand, within BACOVA_02462at 225.527 kb on - strand, within BACOVA_02462at 225.527 kb on - strand, within BACOVA_02462at 225.544 kb on - strand, within BACOVA_02462

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
remove
222,814 + BACOVA_02460 0.42 -0.2
222,850 - BACOVA_02460 0.45 +1.0
222,850 - BACOVA_02460 0.45 +0.8
223,039 + BACOVA_02460 0.62 -0.6
223,039 + BACOVA_02460 0.62 +0.5
223,039 + BACOVA_02460 0.62 +0.7
223,040 - BACOVA_02460 0.62 +1.0
223,040 - BACOVA_02460 0.62 +1.1
223,046 - BACOVA_02460 0.62 +2.0
223,051 + BACOVA_02460 0.63 -1.3
223,052 - BACOVA_02460 0.63 -0.1
223,059 + BACOVA_02460 0.63 -1.1
223,065 + BACOVA_02460 0.64 +1.0
223,065 + BACOVA_02460 0.64 +1.1
223,070 + BACOVA_02460 0.64 -1.5
223,118 - BACOVA_02460 0.68 -0.9
223,121 + BACOVA_02460 0.69 +1.3
223,191 - BACOVA_02460 0.75 +0.4
223,226 - BACOVA_02460 0.78 -0.2
223,226 - BACOVA_02460 0.78 +0.2
223,271 + BACOVA_02460 0.82 +0.2
223,282 + BACOVA_02460 0.83 -1.3
223,294 - BACOVA_02460 0.84 -0.1
223,294 - BACOVA_02460 0.84 -0.1
223,294 - BACOVA_02460 0.84 +1.8
223,341 + BACOVA_02460 0.88 +1.3
223,342 - BACOVA_02460 0.88 +0.1
223,448 - -1.3
223,482 - +1.5
223,490 - +0.5
223,490 - -0.2
223,522 - +0.3
223,550 - +0.5
223,550 - +1.0
223,550 - +0.3
223,550 - +0.7
223,557 + -0.9
223,558 - +0.5
223,576 - +1.1
223,592 - BACOVA_02461 0.10 -1.1
223,597 - BACOVA_02461 0.11 +0.8
223,613 - BACOVA_02461 0.12 +1.9
223,616 + BACOVA_02461 0.12 +0.7
223,617 - BACOVA_02461 0.12 -1.1
223,617 - BACOVA_02461 0.12 +1.1
223,617 - BACOVA_02461 0.12 -0.2
223,628 + BACOVA_02461 0.13 -0.4
223,629 - BACOVA_02461 0.14 +1.2
223,629 - BACOVA_02461 0.14 -1.1
223,629 - BACOVA_02461 0.14 +0.8
223,659 - BACOVA_02461 0.16 +1.3
223,659 - BACOVA_02461 0.16 -0.7
223,746 - BACOVA_02461 0.24 +1.4
223,757 - BACOVA_02461 0.25 +1.0
223,757 - BACOVA_02461 0.25 +1.2
223,779 - BACOVA_02461 0.27 +2.0
223,806 + BACOVA_02461 0.30 +0.4
223,807 - BACOVA_02461 0.30 +0.9
223,812 - BACOVA_02461 0.30 +0.1
223,814 - BACOVA_02461 0.31 -0.8
223,908 - BACOVA_02461 0.39 +0.1
223,915 - BACOVA_02461 0.40 +1.2
223,922 + BACOVA_02461 0.41 +1.1
223,923 - BACOVA_02461 0.41 +1.4
223,923 - BACOVA_02461 0.41 -0.8
223,976 - BACOVA_02461 0.46 +1.0
223,995 - BACOVA_02461 0.47 -0.9
224,041 + BACOVA_02461 0.52 -1.1
224,041 + BACOVA_02461 0.52 +0.9
224,081 - BACOVA_02461 0.55 +1.7
224,108 - BACOVA_02461 0.58 +0.8
224,112 - BACOVA_02461 0.58 +1.6
224,150 - BACOVA_02461 0.62 +0.5
224,150 - BACOVA_02461 0.62 -1.5
224,150 - BACOVA_02461 0.62 +1.6
224,193 - BACOVA_02461 0.66 +0.2
224,193 - BACOVA_02461 0.66 +0.5
224,197 - BACOVA_02461 0.66 +0.9
224,231 - BACOVA_02461 0.69 +2.0
224,387 - BACOVA_02461 0.84 +1.4
224,433 - BACOVA_02461 0.88 +1.3
224,460 - -0.9
224,460 - +0.9
224,465 - +0.8
224,541 - +1.3
224,541 - -1.4
224,541 - +1.4
224,555 - +0.8
224,555 - +0.0
224,575 - +1.2
224,610 + -0.2
224,614 - +1.0
224,617 - -0.3
224,617 - +1.0
224,620 - +0.5
224,665 + +0.4
224,666 - -1.3
224,666 - -1.9
224,670 - +0.3
224,674 - +2.0
224,674 - -2.0
224,674 - +1.9
224,706 - BACOVA_02462 0.12 +0.9
224,708 + BACOVA_02462 0.12 +0.3
224,727 - BACOVA_02462 0.14 +2.0
224,756 - BACOVA_02462 0.16 -0.0
224,767 - BACOVA_02462 0.17 +2.5
224,787 - BACOVA_02462 0.19 +1.1
224,787 - BACOVA_02462 0.19 +2.2
224,787 - BACOVA_02462 0.19 +1.3
224,792 - BACOVA_02462 0.19 +2.4
224,826 - BACOVA_02462 0.22 -0.8
224,827 + BACOVA_02462 0.22 +0.2
224,830 + BACOVA_02462 0.22 -1.3
224,831 - BACOVA_02462 0.23 +0.2
224,833 - BACOVA_02462 0.23 +1.1
224,840 - BACOVA_02462 0.23 -1.8
224,870 + BACOVA_02462 0.26 +0.6
224,882 - BACOVA_02462 0.27 -0.0
224,941 - BACOVA_02462 0.32 -0.9
224,941 - BACOVA_02462 0.32 +0.4
224,976 + BACOVA_02462 0.35 +0.7
224,981 - BACOVA_02462 0.35 +1.2
225,005 - BACOVA_02462 0.37 -0.2
225,007 - BACOVA_02462 0.37 -0.1
225,007 - BACOVA_02462 0.37 -0.6
225,007 - BACOVA_02462 0.37 +0.6
225,063 - BACOVA_02462 0.42 +1.3
225,105 - BACOVA_02462 0.45 -1.4
225,107 - BACOVA_02462 0.46 +1.2
225,107 - BACOVA_02462 0.46 +1.8
225,137 - BACOVA_02462 0.48 +1.4
225,193 - BACOVA_02462 0.53 -0.9
225,202 - BACOVA_02462 0.53 +0.0
225,202 - BACOVA_02462 0.53 +1.3
225,263 + BACOVA_02462 0.58 -0.8
225,264 - BACOVA_02462 0.59 -0.3
225,347 - BACOVA_02462 0.66 +1.8
225,353 + BACOVA_02462 0.66 +2.2
225,356 - BACOVA_02462 0.66 +1.2
225,358 + BACOVA_02462 0.66 +1.6
225,359 - BACOVA_02462 0.67 +1.4
225,363 - BACOVA_02462 0.67 +1.1
225,396 - BACOVA_02462 0.70 +0.6
225,433 - BACOVA_02462 0.73 +0.8
225,504 - BACOVA_02462 0.79 -0.4
225,504 - BACOVA_02462 0.79 +0.3
225,527 - BACOVA_02462 0.81 +1.0
225,527 - BACOVA_02462 0.81 +0.1
225,544 - BACOVA_02462 0.82 +1.3

Or see this region's nucleotide sequence