Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01957

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01956 and BACOVA_01957 overlap by 35 nucleotidesBACOVA_01957 and BACOVA_01958 overlap by 59 nucleotides BACOVA_01956: BACOVA_01956 - beta-ketoacyl-acyl-carrier-protein synthase II, at 164,670 to 165,932 _01956 BACOVA_01957: BACOVA_01957 - ribonuclease III, at 165,898 to 166,956 _01957 BACOVA_01958: BACOVA_01958 - phosphofructokinase, at 166,898 to 167,908 _01958 Position (kb) 165 166 167Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 165.933 kb on + strandat 165.994 kb on + strandat 166.035 kb on + strand, within BACOVA_01957at 166.046 kb on - strand, within BACOVA_01957at 166.127 kb on + strand, within BACOVA_01957at 166.161 kb on + strand, within BACOVA_01957at 166.162 kb on - strand, within BACOVA_01957at 166.162 kb on - strand, within BACOVA_01957at 166.169 kb on - strand, within BACOVA_01957at 166.209 kb on + strand, within BACOVA_01957at 166.210 kb on - strand, within BACOVA_01957at 166.226 kb on + strand, within BACOVA_01957at 166.285 kb on + strand, within BACOVA_01957at 166.286 kb on - strand, within BACOVA_01957at 166.286 kb on - strand, within BACOVA_01957at 166.290 kb on + strand, within BACOVA_01957at 166.316 kb on - strand, within BACOVA_01957at 166.316 kb on - strand, within BACOVA_01957at 166.316 kb on - strand, within BACOVA_01957at 166.321 kb on + strand, within BACOVA_01957at 166.322 kb on - strand, within BACOVA_01957at 166.322 kb on - strand, within BACOVA_01957at 166.354 kb on - strand, within BACOVA_01957at 166.354 kb on - strand, within BACOVA_01957at 166.357 kb on + strand, within BACOVA_01957at 166.417 kb on + strand, within BACOVA_01957at 166.418 kb on - strand, within BACOVA_01957at 166.418 kb on - strand, within BACOVA_01957at 166.420 kb on - strand, within BACOVA_01957at 166.437 kb on - strand, within BACOVA_01957at 166.551 kb on - strand, within BACOVA_01957at 166.565 kb on + strand, within BACOVA_01957at 166.565 kb on + strand, within BACOVA_01957at 166.566 kb on - strand, within BACOVA_01957at 166.569 kb on + strand, within BACOVA_01957at 166.569 kb on + strand, within BACOVA_01957at 166.647 kb on - strand, within BACOVA_01957at 166.647 kb on - strand, within BACOVA_01957at 166.671 kb on + strand, within BACOVA_01957at 166.671 kb on + strand, within BACOVA_01957at 166.671 kb on + strand, within BACOVA_01957at 166.671 kb on + strand, within BACOVA_01957at 166.672 kb on - strand, within BACOVA_01957at 166.672 kb on - strand, within BACOVA_01957at 166.672 kb on - strand, within BACOVA_01957at 166.698 kb on - strand, within BACOVA_01957at 166.820 kb on + strand, within BACOVA_01957at 166.875 kb on - strandat 166.875 kb on - strandat 166.993 kb on + strandat 166.993 kb on + strandat 166.993 kb on + strandat 166.993 kb on + strandat 166.993 kb on + strandat 166.994 kb on - strandat 166.994 kb on - strandat 167.000 kb on + strand, within BACOVA_01958at 167.000 kb on + strand, within BACOVA_01958at 167.001 kb on - strand, within BACOVA_01958at 167.001 kb on - strand, within BACOVA_01958at 167.002 kb on + strand, within BACOVA_01958at 167.015 kb on + strand, within BACOVA_01958at 167.104 kb on + strand, within BACOVA_01958at 167.126 kb on - strand, within BACOVA_01958at 167.126 kb on - strand, within BACOVA_01958at 167.128 kb on - strand, within BACOVA_01958at 167.154 kb on - strand, within BACOVA_01958at 167.166 kb on + strand, within BACOVA_01958at 167.238 kb on - strand, within BACOVA_01958at 167.238 kb on - strand, within BACOVA_01958at 167.238 kb on - strand, within BACOVA_01958at 167.242 kb on + strand, within BACOVA_01958at 167.242 kb on + strand, within BACOVA_01958at 167.302 kb on + strand, within BACOVA_01958at 167.302 kb on + strand, within BACOVA_01958at 167.303 kb on - strand, within BACOVA_01958at 167.304 kb on + strand, within BACOVA_01958at 167.378 kb on - strand, within BACOVA_01958at 167.453 kb on - strand, within BACOVA_01958at 167.458 kb on + strand, within BACOVA_01958at 167.459 kb on - strand, within BACOVA_01958at 167.459 kb on - strand, within BACOVA_01958at 167.503 kb on + strand, within BACOVA_01958at 167.504 kb on + strand, within BACOVA_01958at 167.521 kb on + strand, within BACOVA_01958at 167.531 kb on + strand, within BACOVA_01958at 167.531 kb on + strand, within BACOVA_01958at 167.532 kb on - strand, within BACOVA_01958at 167.532 kb on - strand, within BACOVA_01958at 167.539 kb on + strand, within BACOVA_01958at 167.540 kb on - strand, within BACOVA_01958at 167.540 kb on - strand, within BACOVA_01958at 167.640 kb on - strand, within BACOVA_01958at 167.705 kb on + strand, within BACOVA_01958at 167.706 kb on - strand, within BACOVA_01958at 167.753 kb on - strand, within BACOVA_01958at 167.755 kb on + strand, within BACOVA_01958at 167.756 kb on - strand, within BACOVA_01958at 167.804 kb on + strand, within BACOVA_01958at 167.804 kb on + strand, within BACOVA_01958at 167.805 kb on - strand, within BACOVA_01958at 167.823 kb on + strandat 167.892 kb on - strandat 167.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
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165,933 + +0.3
165,994 + -0.0
166,035 + BACOVA_01957 0.13 +0.0
166,046 - BACOVA_01957 0.14 +0.0
166,127 + BACOVA_01957 0.22 +0.1
166,161 + BACOVA_01957 0.25 -1.1
166,162 - BACOVA_01957 0.25 -1.2
166,162 - BACOVA_01957 0.25 -0.5
166,169 - BACOVA_01957 0.26 -0.2
166,209 + BACOVA_01957 0.29 -0.1
166,210 - BACOVA_01957 0.29 -1.0
166,226 + BACOVA_01957 0.31 -0.3
166,285 + BACOVA_01957 0.37 +0.0
166,286 - BACOVA_01957 0.37 -0.2
166,286 - BACOVA_01957 0.37 +0.3
166,290 + BACOVA_01957 0.37 -2.1
166,316 - BACOVA_01957 0.39 -0.5
166,316 - BACOVA_01957 0.39 +1.6
166,316 - BACOVA_01957 0.39 +0.3
166,321 + BACOVA_01957 0.40 -0.8
166,322 - BACOVA_01957 0.40 -0.4
166,322 - BACOVA_01957 0.40 -0.2
166,354 - BACOVA_01957 0.43 -0.9
166,354 - BACOVA_01957 0.43 -0.6
166,357 + BACOVA_01957 0.43 -0.3
166,417 + BACOVA_01957 0.49 +0.3
166,418 - BACOVA_01957 0.49 -1.2
166,418 - BACOVA_01957 0.49 +0.5
166,420 - BACOVA_01957 0.49 +0.3
166,437 - BACOVA_01957 0.51 -0.7
166,551 - BACOVA_01957 0.62 -0.5
166,565 + BACOVA_01957 0.63 -0.9
166,565 + BACOVA_01957 0.63 +0.7
166,566 - BACOVA_01957 0.63 +0.1
166,569 + BACOVA_01957 0.63 -0.1
166,569 + BACOVA_01957 0.63 -1.7
166,647 - BACOVA_01957 0.71 +0.0
166,647 - BACOVA_01957 0.71 +0.5
166,671 + BACOVA_01957 0.73 -0.5
166,671 + BACOVA_01957 0.73 -1.3
166,671 + BACOVA_01957 0.73 +0.0
166,671 + BACOVA_01957 0.73 -0.2
166,672 - BACOVA_01957 0.73 -0.5
166,672 - BACOVA_01957 0.73 -1.0
166,672 - BACOVA_01957 0.73 -0.4
166,698 - BACOVA_01957 0.76 -0.6
166,820 + BACOVA_01957 0.87 -0.7
166,875 - -1.1
166,875 - +0.4
166,993 + +0.4
166,993 + -0.3
166,993 + -1.5
166,993 + -1.3
166,993 + +0.2
166,994 - -0.5
166,994 - -0.2
167,000 + BACOVA_01958 0.10 +1.2
167,000 + BACOVA_01958 0.10 -0.3
167,001 - BACOVA_01958 0.10 -0.3
167,001 - BACOVA_01958 0.10 -0.8
167,002 + BACOVA_01958 0.10 -0.6
167,015 + BACOVA_01958 0.12 +0.5
167,104 + BACOVA_01958 0.20 +0.9
167,126 - BACOVA_01958 0.23 +0.5
167,126 - BACOVA_01958 0.23 +0.4
167,128 - BACOVA_01958 0.23 +0.1
167,154 - BACOVA_01958 0.25 +0.5
167,166 + BACOVA_01958 0.27 +0.4
167,238 - BACOVA_01958 0.34 +0.3
167,238 - BACOVA_01958 0.34 +0.5
167,238 - BACOVA_01958 0.34 -3.1
167,242 + BACOVA_01958 0.34 +1.5
167,242 + BACOVA_01958 0.34 -0.9
167,302 + BACOVA_01958 0.40 +1.0
167,302 + BACOVA_01958 0.40 +0.5
167,303 - BACOVA_01958 0.40 -0.1
167,304 + BACOVA_01958 0.40 -0.2
167,378 - BACOVA_01958 0.47 +2.0
167,453 - BACOVA_01958 0.55 -1.1
167,458 + BACOVA_01958 0.55 -1.7
167,459 - BACOVA_01958 0.55 +1.0
167,459 - BACOVA_01958 0.55 -0.5
167,503 + BACOVA_01958 0.60 -0.0
167,504 + BACOVA_01958 0.60 -1.0
167,521 + BACOVA_01958 0.62 -0.0
167,531 + BACOVA_01958 0.63 -2.4
167,531 + BACOVA_01958 0.63 -2.0
167,532 - BACOVA_01958 0.63 +0.3
167,532 - BACOVA_01958 0.63 -0.2
167,539 + BACOVA_01958 0.63 -3.3
167,540 - BACOVA_01958 0.64 +0.8
167,540 - BACOVA_01958 0.64 -1.3
167,640 - BACOVA_01958 0.73 -0.0
167,705 + BACOVA_01958 0.80 -1.3
167,706 - BACOVA_01958 0.80 -0.6
167,753 - BACOVA_01958 0.85 -0.3
167,755 + BACOVA_01958 0.85 -0.8
167,756 - BACOVA_01958 0.85 -0.5
167,804 + BACOVA_01958 0.90 -0.1
167,804 + BACOVA_01958 0.90 +1.5
167,805 - BACOVA_01958 0.90 -0.9
167,823 + -0.3
167,892 - -0.1
167,941 - +0.3

Or see this region's nucleotide sequence