Experiment: Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00867 and BACOVA_00869 are separated by 11 nucleotides BACOVA_00869 and BACOVA_00868 overlap by 31 nucleotides BACOVA_00868 and BACOVA_00870 are separated by 60 nucleotides BACOVA_00870 and BACOVA_00871 are separated by 53 nucleotides
BACOVA_00867: BACOVA_00867 - hypothetical protein, at 123,220 to 124,329
_00867
BACOVA_00869: BACOVA_00869 - hypothetical protein, at 124,341 to 124,448
_00869
BACOVA_00868: BACOVA_00868 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 124,418 to 126,832
_00868
BACOVA_00870: BACOVA_00870 - hypothetical protein, at 126,893 to 127,000
_00870
BACOVA_00871: BACOVA_00871 - putative 8-amino-7-oxononanoate synthase, at 127,054 to 128,208
_00871
Position (kb) 124
125
126
127 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 123.423 kb on + strand, within BACOVA_00867 at 123.424 kb on - strand, within BACOVA_00867 at 123.442 kb on - strand, within BACOVA_00867 at 123.471 kb on + strand, within BACOVA_00867 at 123.534 kb on - strand, within BACOVA_00867 at 123.578 kb on + strand, within BACOVA_00867 at 123.578 kb on + strand, within BACOVA_00867 at 123.628 kb on + strand, within BACOVA_00867 at 123.644 kb on + strand, within BACOVA_00867 at 123.645 kb on - strand, within BACOVA_00867 at 123.645 kb on - strand, within BACOVA_00867 at 123.647 kb on - strand, within BACOVA_00867 at 123.698 kb on - strand, within BACOVA_00867 at 123.709 kb on - strand, within BACOVA_00867 at 123.741 kb on + strand, within BACOVA_00867 at 123.742 kb on - strand, within BACOVA_00867 at 123.745 kb on + strand, within BACOVA_00867 at 123.746 kb on - strand, within BACOVA_00867 at 123.774 kb on - strand, within BACOVA_00867 at 123.778 kb on - strand, within BACOVA_00867 at 123.795 kb on - strand, within BACOVA_00867 at 123.797 kb on - strand, within BACOVA_00867 at 123.799 kb on + strand, within BACOVA_00867 at 123.799 kb on + strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.873 kb on + strand, within BACOVA_00867 at 123.874 kb on - strand, within BACOVA_00867 at 123.879 kb on + strand, within BACOVA_00867 at 123.879 kb on + strand, within BACOVA_00867 at 123.924 kb on + strand, within BACOVA_00867 at 123.924 kb on + strand, within BACOVA_00867 at 123.925 kb on - strand, within BACOVA_00867 at 124.004 kb on + strand, within BACOVA_00867 at 124.082 kb on - strand, within BACOVA_00867 at 124.175 kb on - strand, within BACOVA_00867 at 124.192 kb on + strand, within BACOVA_00867 at 124.196 kb on + strand, within BACOVA_00867 at 124.196 kb on + strand, within BACOVA_00867 at 124.197 kb on - strand, within BACOVA_00867 at 124.222 kb on + strand at 124.229 kb on - strand at 124.250 kb on + strand at 124.280 kb on - strand at 124.280 kb on - strand at 124.313 kb on - strand at 124.378 kb on + strand, within BACOVA_00869 at 124.438 kb on - strand at 124.491 kb on - strand at 124.491 kb on - strand at 124.491 kb on - strand at 124.491 kb on - strand at 124.508 kb on - strand at 124.548 kb on + strand at 124.549 kb on - strand at 124.552 kb on - strand at 124.588 kb on + strand at 124.589 kb on - strand at 124.595 kb on + strand at 124.606 kb on + strand at 124.654 kb on - strand at 124.727 kb on - strand, within BACOVA_00868 at 124.830 kb on - strand, within BACOVA_00868 at 124.964 kb on - strand, within BACOVA_00868 at 124.988 kb on + strand, within BACOVA_00868 at 124.990 kb on + strand, within BACOVA_00868 at 124.990 kb on + strand, within BACOVA_00868 at 125.093 kb on - strand, within BACOVA_00868 at 125.093 kb on - strand, within BACOVA_00868 at 125.134 kb on + strand, within BACOVA_00868 at 125.184 kb on + strand, within BACOVA_00868 at 125.210 kb on - strand, within BACOVA_00868 at 125.290 kb on + strand, within BACOVA_00868 at 125.290 kb on + strand, within BACOVA_00868 at 125.290 kb on + strand, within BACOVA_00868 at 125.291 kb on - strand, within BACOVA_00868 at 125.302 kb on + strand, within BACOVA_00868 at 125.344 kb on - strand, within BACOVA_00868 at 125.363 kb on - strand, within BACOVA_00868 at 125.460 kb on + strand, within BACOVA_00868 at 125.461 kb on - strand, within BACOVA_00868 at 125.461 kb on - strand, within BACOVA_00868 at 125.462 kb on + strand, within BACOVA_00868 at 125.462 kb on + strand, within BACOVA_00868 at 125.462 kb on + strand, within BACOVA_00868 at 125.463 kb on - strand, within BACOVA_00868 at 125.463 kb on - strand, within BACOVA_00868 at 125.463 kb on - strand, within BACOVA_00868 at 125.555 kb on + strand, within BACOVA_00868 at 125.603 kb on + strand, within BACOVA_00868 at 125.603 kb on + strand, within BACOVA_00868 at 125.603 kb on + strand, within BACOVA_00868 at 125.634 kb on - strand, within BACOVA_00868 at 125.641 kb on - strand, within BACOVA_00868 at 125.666 kb on - strand, within BACOVA_00868 at 125.729 kb on + strand, within BACOVA_00868 at 125.729 kb on + strand, within BACOVA_00868 at 125.729 kb on + strand, within BACOVA_00868 at 125.732 kb on - strand, within BACOVA_00868 at 125.770 kb on - strand, within BACOVA_00868 at 125.773 kb on + strand, within BACOVA_00868 at 125.838 kb on + strand, within BACOVA_00868 at 125.876 kb on + strand, within BACOVA_00868 at 125.877 kb on - strand, within BACOVA_00868 at 125.901 kb on + strand, within BACOVA_00868 at 125.926 kb on - strand, within BACOVA_00868 at 125.936 kb on + strand, within BACOVA_00868 at 125.936 kb on + strand, within BACOVA_00868 at 125.936 kb on + strand, within BACOVA_00868 at 125.998 kb on + strand, within BACOVA_00868 at 126.127 kb on + strand, within BACOVA_00868 at 126.128 kb on - strand, within BACOVA_00868 at 126.129 kb on + strand, within BACOVA_00868 at 126.129 kb on + strand, within BACOVA_00868 at 126.130 kb on - strand, within BACOVA_00868 at 126.132 kb on + strand, within BACOVA_00868 at 126.133 kb on - strand, within BACOVA_00868 at 126.133 kb on - strand, within BACOVA_00868 at 126.133 kb on - strand, within BACOVA_00868 at 126.139 kb on - strand, within BACOVA_00868 at 126.168 kb on - strand, within BACOVA_00868 at 126.224 kb on + strand, within BACOVA_00868 at 126.298 kb on - strand, within BACOVA_00868 at 126.298 kb on - strand, within BACOVA_00868 at 126.298 kb on - strand, within BACOVA_00868 at 126.298 kb on - strand, within BACOVA_00868 at 126.322 kb on + strand, within BACOVA_00868 at 126.352 kb on - strand, within BACOVA_00868 at 126.363 kb on + strand, within BACOVA_00868 at 126.363 kb on + strand, within BACOVA_00868 at 126.364 kb on - strand, within BACOVA_00868 at 126.364 kb on - strand, within BACOVA_00868 at 126.395 kb on + strand, within BACOVA_00868 at 126.396 kb on - strand, within BACOVA_00868 at 126.396 kb on - strand, within BACOVA_00868 at 126.397 kb on + strand, within BACOVA_00868 at 126.398 kb on - strand, within BACOVA_00868 at 126.415 kb on - strand, within BACOVA_00868 at 126.440 kb on - strand, within BACOVA_00868 at 126.440 kb on - strand, within BACOVA_00868 at 126.470 kb on - strand, within BACOVA_00868 at 126.481 kb on + strand, within BACOVA_00868 at 126.482 kb on - strand, within BACOVA_00868 at 126.488 kb on - strand, within BACOVA_00868 at 126.633 kb on + strand at 126.682 kb on + strand at 126.683 kb on - strand at 126.683 kb on - strand at 126.691 kb on + strand at 126.748 kb on - strand at 126.748 kb on - strand at 126.749 kb on + strand at 126.786 kb on + strand at 126.811 kb on + strand at 126.812 kb on - strand at 126.812 kb on - strand at 126.847 kb on - strand at 126.849 kb on + strand at 126.990 kb on + strand at 127.022 kb on + strand at 127.023 kb on - strand at 127.023 kb on - strand at 127.033 kb on + strand at 127.034 kb on - strand at 127.037 kb on - strand at 127.068 kb on + strand at 127.069 kb on - strand at 127.108 kb on + strand at 127.186 kb on - strand, within BACOVA_00871 at 127.192 kb on + strand, within BACOVA_00871 at 127.193 kb on - strand, within BACOVA_00871 at 127.267 kb on - strand, within BACOVA_00871 at 127.310 kb on - strand, within BACOVA_00871 at 127.310 kb on - strand, within BACOVA_00871 at 127.331 kb on + strand, within BACOVA_00871 at 127.362 kb on + strand, within BACOVA_00871 at 127.362 kb on + strand, within BACOVA_00871 at 127.363 kb on - strand, within BACOVA_00871 at 127.363 kb on - strand, within BACOVA_00871 at 127.364 kb on + strand, within BACOVA_00871 at 127.365 kb on - strand, within BACOVA_00871 at 127.378 kb on + strand, within BACOVA_00871 at 127.390 kb on - strand, within BACOVA_00871 at 127.397 kb on + strand, within BACOVA_00871 at 127.398 kb on - strand, within BACOVA_00871 at 127.398 kb on - strand, within BACOVA_00871 at 127.428 kb on + strand, within BACOVA_00871 at 127.495 kb on - strand, within BACOVA_00871 at 127.516 kb on - strand, within BACOVA_00871 at 127.559 kb on - strand, within BACOVA_00871 at 127.573 kb on - strand, within BACOVA_00871 at 127.587 kb on + strand, within BACOVA_00871 at 127.649 kb on - strand, within BACOVA_00871 at 127.649 kb on - strand, within BACOVA_00871 at 127.670 kb on + strand, within BACOVA_00871 at 127.670 kb on + strand, within BACOVA_00871 at 127.713 kb on - strand, within BACOVA_00871 at 127.713 kb on - strand, within BACOVA_00871 at 127.737 kb on + strand, within BACOVA_00871 at 127.749 kb on - strand, within BACOVA_00871 at 127.799 kb on - strand, within BACOVA_00871 at 127.799 kb on - strand, within BACOVA_00871 at 127.800 kb on + strand, within BACOVA_00871 at 127.801 kb on - strand, within BACOVA_00871
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/mL (C) remove 123,423 + BACOVA_00867 0.18 -0.5 123,424 - BACOVA_00867 0.18 -0.0 123,442 - BACOVA_00867 0.20 +1.6 123,471 + BACOVA_00867 0.23 -0.3 123,534 - BACOVA_00867 0.28 -0.4 123,578 + BACOVA_00867 0.32 +0.1 123,578 + BACOVA_00867 0.32 -0.4 123,628 + BACOVA_00867 0.37 +0.1 123,644 + BACOVA_00867 0.38 +0.5 123,645 - BACOVA_00867 0.38 -1.7 123,645 - BACOVA_00867 0.38 +1.0 123,647 - BACOVA_00867 0.38 +0.6 123,698 - BACOVA_00867 0.43 -0.5 123,709 - BACOVA_00867 0.44 +0.3 123,741 + BACOVA_00867 0.47 -1.4 123,742 - BACOVA_00867 0.47 -0.1 123,745 + BACOVA_00867 0.47 +0.5 123,746 - BACOVA_00867 0.47 -0.3 123,774 - BACOVA_00867 0.50 -0.2 123,778 - BACOVA_00867 0.50 -0.5 123,795 - BACOVA_00867 0.52 -1.5 123,797 - BACOVA_00867 0.52 -0.0 123,799 + BACOVA_00867 0.52 -1.3 123,799 + BACOVA_00867 0.52 -0.8 123,800 - BACOVA_00867 0.52 +1.8 123,800 - BACOVA_00867 0.52 -0.5 123,800 - BACOVA_00867 0.52 +0.9 123,800 - BACOVA_00867 0.52 -1.6 123,873 + BACOVA_00867 0.59 -1.0 123,874 - BACOVA_00867 0.59 +0.1 123,879 + BACOVA_00867 0.59 -0.3 123,879 + BACOVA_00867 0.59 +0.5 123,924 + BACOVA_00867 0.63 +0.4 123,924 + BACOVA_00867 0.63 +0.2 123,925 - BACOVA_00867 0.64 -0.4 124,004 + BACOVA_00867 0.71 +0.3 124,082 - BACOVA_00867 0.78 -1.4 124,175 - BACOVA_00867 0.86 -0.9 124,192 + BACOVA_00867 0.88 +0.7 124,196 + BACOVA_00867 0.88 -0.1 124,196 + BACOVA_00867 0.88 -0.4 124,197 - BACOVA_00867 0.88 +0.3 124,222 + +0.3 124,229 - -0.3 124,250 + -0.6 124,280 - -1.0 124,280 - +0.3 124,313 - +0.3 124,378 + BACOVA_00869 0.34 -0.3 124,438 - -3.3 124,491 - -1.3 124,491 - -2.9 124,491 - +0.1 124,491 - -3.6 124,508 - -2.9 124,548 + -0.7 124,549 - -2.0 124,552 - -1.4 124,588 + -0.4 124,589 - -1.9 124,595 + -1.1 124,606 + -1.9 124,654 - -2.5 124,727 - BACOVA_00868 0.13 -1.7 124,830 - BACOVA_00868 0.17 -1.6 124,964 - BACOVA_00868 0.23 -1.9 124,988 + BACOVA_00868 0.24 -1.6 124,990 + BACOVA_00868 0.24 -1.2 124,990 + BACOVA_00868 0.24 -0.6 125,093 - BACOVA_00868 0.28 -1.4 125,093 - BACOVA_00868 0.28 -0.9 125,134 + BACOVA_00868 0.30 -1.7 125,184 + BACOVA_00868 0.32 -1.4 125,210 - BACOVA_00868 0.33 -1.3 125,290 + BACOVA_00868 0.36 -1.6 125,290 + BACOVA_00868 0.36 -3.2 125,290 + BACOVA_00868 0.36 -3.8 125,291 - BACOVA_00868 0.36 -1.1 125,302 + BACOVA_00868 0.37 -3.0 125,344 - BACOVA_00868 0.38 -1.7 125,363 - BACOVA_00868 0.39 -0.9 125,460 + BACOVA_00868 0.43 -2.2 125,461 - BACOVA_00868 0.43 -0.3 125,461 - BACOVA_00868 0.43 -3.7 125,462 + BACOVA_00868 0.43 -3.2 125,462 + BACOVA_00868 0.43 -1.4 125,462 + BACOVA_00868 0.43 -0.9 125,463 - BACOVA_00868 0.43 -1.1 125,463 - BACOVA_00868 0.43 -3.8 125,463 - BACOVA_00868 0.43 -1.6 125,555 + BACOVA_00868 0.47 -1.4 125,603 + BACOVA_00868 0.49 -1.7 125,603 + BACOVA_00868 0.49 -0.3 125,603 + BACOVA_00868 0.49 -0.8 125,634 - BACOVA_00868 0.50 -2.1 125,641 - BACOVA_00868 0.51 -0.2 125,666 - BACOVA_00868 0.52 -0.6 125,729 + BACOVA_00868 0.54 -3.9 125,729 + BACOVA_00868 0.54 -1.5 125,729 + BACOVA_00868 0.54 -1.4 125,732 - BACOVA_00868 0.54 +0.0 125,770 - BACOVA_00868 0.56 -0.1 125,773 + BACOVA_00868 0.56 -2.3 125,838 + BACOVA_00868 0.59 -2.7 125,876 + BACOVA_00868 0.60 -2.4 125,877 - BACOVA_00868 0.60 -1.1 125,901 + BACOVA_00868 0.61 -1.5 125,926 - BACOVA_00868 0.62 -1.8 125,936 + BACOVA_00868 0.63 -1.6 125,936 + BACOVA_00868 0.63 -0.9 125,936 + BACOVA_00868 0.63 -0.3 125,998 + BACOVA_00868 0.65 -1.1 126,127 + BACOVA_00868 0.71 -2.1 126,128 - BACOVA_00868 0.71 -1.5 126,129 + BACOVA_00868 0.71 -0.7 126,129 + BACOVA_00868 0.71 -0.3 126,130 - BACOVA_00868 0.71 -1.1 126,132 + BACOVA_00868 0.71 -2.8 126,133 - BACOVA_00868 0.71 -2.1 126,133 - BACOVA_00868 0.71 -2.7 126,133 - BACOVA_00868 0.71 -2.9 126,139 - BACOVA_00868 0.71 -3.8 126,168 - BACOVA_00868 0.72 -3.8 126,224 + BACOVA_00868 0.75 -2.5 126,298 - BACOVA_00868 0.78 -2.5 126,298 - BACOVA_00868 0.78 -4.2 126,298 - BACOVA_00868 0.78 -3.5 126,298 - BACOVA_00868 0.78 -0.9 126,322 + BACOVA_00868 0.79 -1.7 126,352 - BACOVA_00868 0.80 -2.2 126,363 + BACOVA_00868 0.81 -1.7 126,363 + BACOVA_00868 0.81 -3.6 126,364 - BACOVA_00868 0.81 -4.3 126,364 - BACOVA_00868 0.81 -1.7 126,395 + BACOVA_00868 0.82 -0.9 126,396 - BACOVA_00868 0.82 -2.3 126,396 - BACOVA_00868 0.82 -1.1 126,397 + BACOVA_00868 0.82 -0.4 126,398 - BACOVA_00868 0.82 -2.1 126,415 - BACOVA_00868 0.83 -4.1 126,440 - BACOVA_00868 0.84 -2.4 126,440 - BACOVA_00868 0.84 +0.0 126,470 - BACOVA_00868 0.85 -1.8 126,481 + BACOVA_00868 0.85 -3.5 126,482 - BACOVA_00868 0.85 -1.9 126,488 - BACOVA_00868 0.86 -3.9 126,633 + -0.6 126,682 + -2.2 126,683 - -1.4 126,683 - -2.4 126,691 + -2.5 126,748 - -0.6 126,748 - -3.0 126,749 + -0.7 126,786 + -1.8 126,811 + -0.0 126,812 - -1.1 126,812 - -1.4 126,847 - -0.3 126,849 + +0.3 126,990 + -0.1 127,022 + +1.3 127,023 - -0.9 127,023 - -1.1 127,033 + -0.7 127,034 - -2.7 127,037 - -1.4 127,068 + -1.8 127,069 - -2.1 127,108 + -1.4 127,186 - BACOVA_00871 0.11 -2.8 127,192 + BACOVA_00871 0.12 -0.1 127,193 - BACOVA_00871 0.12 -2.7 127,267 - BACOVA_00871 0.18 -2.3 127,310 - BACOVA_00871 0.22 -1.4 127,310 - BACOVA_00871 0.22 -4.1 127,331 + BACOVA_00871 0.24 -1.2 127,362 + BACOVA_00871 0.27 -1.9 127,362 + BACOVA_00871 0.27 -1.9 127,363 - BACOVA_00871 0.27 -3.3 127,363 - BACOVA_00871 0.27 -1.6 127,364 + BACOVA_00871 0.27 -2.8 127,365 - BACOVA_00871 0.27 -2.7 127,378 + BACOVA_00871 0.28 -1.4 127,390 - BACOVA_00871 0.29 -3.6 127,397 + BACOVA_00871 0.30 -1.1 127,398 - BACOVA_00871 0.30 -2.7 127,398 - BACOVA_00871 0.30 -2.2 127,428 + BACOVA_00871 0.32 -2.7 127,495 - BACOVA_00871 0.38 -0.1 127,516 - BACOVA_00871 0.40 +0.9 127,559 - BACOVA_00871 0.44 -3.6 127,573 - BACOVA_00871 0.45 -1.1 127,587 + BACOVA_00871 0.46 -2.4 127,649 - BACOVA_00871 0.52 -1.8 127,649 - BACOVA_00871 0.52 -0.5 127,670 + BACOVA_00871 0.53 -3.3 127,670 + BACOVA_00871 0.53 -0.6 127,713 - BACOVA_00871 0.57 -1.4 127,713 - BACOVA_00871 0.57 -2.6 127,737 + BACOVA_00871 0.59 -2.3 127,749 - BACOVA_00871 0.60 -3.3 127,799 - BACOVA_00871 0.65 -2.2 127,799 - BACOVA_00871 0.65 -0.9 127,800 + BACOVA_00871 0.65 -1.1 127,801 - BACOVA_00871 0.65 -1.3
Or see this region's nucleotide sequence