Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04116

Experiment: bur MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04114 and OHPLBJKB_04115 are separated by 54 nucleotidesOHPLBJKB_04115 and OHPLBJKB_04116 are separated by 202 nucleotidesOHPLBJKB_04116 and OHPLBJKB_04117 are separated by 155 nucleotides OHPLBJKB_04114: OHPLBJKB_04114 - hypothetical protein, at 4,330,087 to 4,330,710 _04114 OHPLBJKB_04115: OHPLBJKB_04115 - 50S ribosomal protein L31, at 4,330,765 to 4,330,977 _04115 OHPLBJKB_04116: OHPLBJKB_04116 - 'Primosomal protein N'' transl_table=11, at 4,331,180 to 4,333,378 _04116 OHPLBJKB_04117: OHPLBJKB_04117 - HTH-type transcriptional repressor CytR, at 4,333,534 to 4,334,559 _04117 Position (kb) 4331 4332 4333 4334Strain fitness (log2 ratio) -2 -1 0 1 2at 4330.188 kb on + strand, within OHPLBJKB_04114at 4330.188 kb on + strand, within OHPLBJKB_04114at 4330.189 kb on - strand, within OHPLBJKB_04114at 4330.189 kb on - strand, within OHPLBJKB_04114at 4330.189 kb on - strand, within OHPLBJKB_04114at 4330.191 kb on + strand, within OHPLBJKB_04114at 4330.191 kb on + strand, within OHPLBJKB_04114at 4330.191 kb on + strand, within OHPLBJKB_04114at 4330.192 kb on - strand, within OHPLBJKB_04114at 4330.192 kb on - strand, within OHPLBJKB_04114at 4330.192 kb on - strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.196 kb on - strand, within OHPLBJKB_04114at 4330.198 kb on - strand, within OHPLBJKB_04114at 4330.298 kb on - strand, within OHPLBJKB_04114at 4330.327 kb on + strand, within OHPLBJKB_04114at 4330.344 kb on + strand, within OHPLBJKB_04114at 4330.391 kb on + strand, within OHPLBJKB_04114at 4330.391 kb on + strand, within OHPLBJKB_04114at 4330.392 kb on - strand, within OHPLBJKB_04114at 4330.430 kb on - strand, within OHPLBJKB_04114at 4330.430 kb on - strand, within OHPLBJKB_04114at 4330.450 kb on - strand, within OHPLBJKB_04114at 4330.464 kb on + strand, within OHPLBJKB_04114at 4330.465 kb on - strand, within OHPLBJKB_04114at 4330.465 kb on - strand, within OHPLBJKB_04114at 4330.487 kb on + strand, within OHPLBJKB_04114at 4330.487 kb on + strand, within OHPLBJKB_04114at 4330.487 kb on + strand, within OHPLBJKB_04114at 4330.488 kb on - strand, within OHPLBJKB_04114at 4330.488 kb on - strand, within OHPLBJKB_04114at 4330.493 kb on + strand, within OHPLBJKB_04114at 4330.493 kb on + strand, within OHPLBJKB_04114at 4330.497 kb on + strand, within OHPLBJKB_04114at 4330.497 kb on + strand, within OHPLBJKB_04114at 4330.498 kb on - strand, within OHPLBJKB_04114at 4330.558 kb on + strand, within OHPLBJKB_04114at 4330.558 kb on + strand, within OHPLBJKB_04114at 4330.558 kb on + strand, within OHPLBJKB_04114at 4330.559 kb on - strand, within OHPLBJKB_04114at 4330.559 kb on - strand, within OHPLBJKB_04114at 4330.559 kb on - strand, within OHPLBJKB_04114at 4330.577 kb on - strand, within OHPLBJKB_04114at 4330.608 kb on + strand, within OHPLBJKB_04114at 4330.608 kb on + strand, within OHPLBJKB_04114at 4330.609 kb on - strand, within OHPLBJKB_04114at 4330.615 kb on - strand, within OHPLBJKB_04114at 4330.617 kb on + strand, within OHPLBJKB_04114at 4330.618 kb on - strand, within OHPLBJKB_04114at 4330.618 kb on - strand, within OHPLBJKB_04114at 4330.695 kb on - strandat 4331.048 kb on - strandat 4331.143 kb on + strandat 4331.143 kb on + strandat 4331.144 kb on - strandat 4331.144 kb on - strandat 4331.144 kb on - strandat 4331.144 kb on - strandat 4331.145 kb on + strandat 4331.145 kb on + strandat 4331.145 kb on + strandat 4331.145 kb on + strandat 4331.145 kb on + strandat 4331.148 kb on + strandat 4331.148 kb on + strandat 4331.148 kb on + strandat 4331.149 kb on - strandat 4331.149 kb on - strandat 4331.179 kb on + strandat 4331.179 kb on + strandat 4333.460 kb on + strandat 4333.489 kb on + strandat 4333.489 kb on + strandat 4333.490 kb on - strandat 4333.501 kb on + strandat 4333.501 kb on + strandat 4333.501 kb on + strandat 4333.501 kb on + strandat 4333.501 kb on + strandat 4333.502 kb on - strandat 4333.502 kb on - strandat 4333.502 kb on - strandat 4333.502 kb on - strandat 4333.502 kb on - strandat 4333.502 kb on - strandat 4333.504 kb on + strandat 4333.505 kb on - strandat 4333.505 kb on - strandat 4333.505 kb on - strandat 4333.505 kb on - strandat 4333.599 kb on + strandat 4333.622 kb on + strandat 4333.623 kb on - strandat 4333.623 kb on - strandat 4333.635 kb on + strandat 4333.691 kb on - strand, within OHPLBJKB_04117at 4333.726 kb on - strand, within OHPLBJKB_04117at 4333.726 kb on - strand, within OHPLBJKB_04117at 4333.726 kb on - strand, within OHPLBJKB_04117at 4333.789 kb on - strand, within OHPLBJKB_04117at 4333.826 kb on - strand, within OHPLBJKB_04117at 4334.019 kb on + strand, within OHPLBJKB_04117at 4334.020 kb on - strand, within OHPLBJKB_04117at 4334.065 kb on + strand, within OHPLBJKB_04117at 4334.066 kb on - strand, within OHPLBJKB_04117at 4334.069 kb on + strand, within OHPLBJKB_04117at 4334.069 kb on + strand, within OHPLBJKB_04117at 4334.070 kb on - strand, within OHPLBJKB_04117at 4334.070 kb on - strand, within OHPLBJKB_04117at 4334.071 kb on + strand, within OHPLBJKB_04117at 4334.071 kb on + strand, within OHPLBJKB_04117at 4334.071 kb on + strand, within OHPLBJKB_04117at 4334.100 kb on + strand, within OHPLBJKB_04117at 4334.149 kb on + strand, within OHPLBJKB_04117at 4334.179 kb on - strand, within OHPLBJKB_04117at 4334.179 kb on - strand, within OHPLBJKB_04117at 4334.194 kb on + strand, within OHPLBJKB_04117at 4334.271 kb on + strand, within OHPLBJKB_04117

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI10
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4,330,188 + OHPLBJKB_04114 0.16 +0.8
4,330,188 + OHPLBJKB_04114 0.16 -0.0
4,330,189 - OHPLBJKB_04114 0.16 +0.6
4,330,189 - OHPLBJKB_04114 0.16 +0.1
4,330,189 - OHPLBJKB_04114 0.16 +0.3
4,330,191 + OHPLBJKB_04114 0.17 +0.3
4,330,191 + OHPLBJKB_04114 0.17 -1.7
4,330,191 + OHPLBJKB_04114 0.17 +1.2
4,330,192 - OHPLBJKB_04114 0.17 -1.7
4,330,192 - OHPLBJKB_04114 0.17 +1.2
4,330,192 - OHPLBJKB_04114 0.17 +0.0
4,330,195 + OHPLBJKB_04114 0.17 +0.5
4,330,195 + OHPLBJKB_04114 0.17 -0.7
4,330,195 + OHPLBJKB_04114 0.17 -1.2
4,330,195 + OHPLBJKB_04114 0.17 -0.2
4,330,195 + OHPLBJKB_04114 0.17 +0.0
4,330,195 + OHPLBJKB_04114 0.17 -0.0
4,330,196 - OHPLBJKB_04114 0.17 -0.3
4,330,198 - OHPLBJKB_04114 0.18 +0.3
4,330,298 - OHPLBJKB_04114 0.34 -0.5
4,330,327 + OHPLBJKB_04114 0.38 +1.1
4,330,344 + OHPLBJKB_04114 0.41 +0.3
4,330,391 + OHPLBJKB_04114 0.49 +2.2
4,330,391 + OHPLBJKB_04114 0.49 -0.0
4,330,392 - OHPLBJKB_04114 0.49 -1.2
4,330,430 - OHPLBJKB_04114 0.55 -1.1
4,330,430 - OHPLBJKB_04114 0.55 +0.4
4,330,450 - OHPLBJKB_04114 0.58 -0.6
4,330,464 + OHPLBJKB_04114 0.60 -1.3
4,330,465 - OHPLBJKB_04114 0.61 +1.0
4,330,465 - OHPLBJKB_04114 0.61 -0.4
4,330,487 + OHPLBJKB_04114 0.64 +1.0
4,330,487 + OHPLBJKB_04114 0.64 -0.2
4,330,487 + OHPLBJKB_04114 0.64 +1.3
4,330,488 - OHPLBJKB_04114 0.64 -0.9
4,330,488 - OHPLBJKB_04114 0.64 +0.3
4,330,493 + OHPLBJKB_04114 0.65 -0.3
4,330,493 + OHPLBJKB_04114 0.65 +0.2
4,330,497 + OHPLBJKB_04114 0.66 -2.4
4,330,497 + OHPLBJKB_04114 0.66 +0.0
4,330,498 - OHPLBJKB_04114 0.66 -1.4
4,330,558 + OHPLBJKB_04114 0.75 +0.1
4,330,558 + OHPLBJKB_04114 0.75 -1.1
4,330,558 + OHPLBJKB_04114 0.75 +0.8
4,330,559 - OHPLBJKB_04114 0.76 +1.9
4,330,559 - OHPLBJKB_04114 0.76 +1.8
4,330,559 - OHPLBJKB_04114 0.76 -0.5
4,330,577 - OHPLBJKB_04114 0.79 -0.9
4,330,608 + OHPLBJKB_04114 0.83 -0.3
4,330,608 + OHPLBJKB_04114 0.83 -0.0
4,330,609 - OHPLBJKB_04114 0.84 +0.3
4,330,615 - OHPLBJKB_04114 0.85 +1.0
4,330,617 + OHPLBJKB_04114 0.85 -1.8
4,330,618 - OHPLBJKB_04114 0.85 +0.2
4,330,618 - OHPLBJKB_04114 0.85 +0.5
4,330,695 - -0.3
4,331,048 - -0.4
4,331,143 + +0.6
4,331,143 + +0.2
4,331,144 - +0.8
4,331,144 - +0.5
4,331,144 - -0.1
4,331,144 - +0.4
4,331,145 + +0.0
4,331,145 + -1.6
4,331,145 + +1.1
4,331,145 + -0.4
4,331,145 + -0.7
4,331,148 + -1.1
4,331,148 + -0.5
4,331,148 + +1.5
4,331,149 - -1.2
4,331,149 - -1.6
4,331,179 + -0.5
4,331,179 + -1.4
4,333,460 + -0.2
4,333,489 + -0.4
4,333,489 + -0.8
4,333,490 - +0.6
4,333,501 + +0.1
4,333,501 + +0.2
4,333,501 + +0.4
4,333,501 + -0.2
4,333,501 + +0.9
4,333,502 - +0.4
4,333,502 - -0.7
4,333,502 - -1.2
4,333,502 - -0.8
4,333,502 - -1.3
4,333,502 - -0.7
4,333,504 + -0.5
4,333,505 - -0.4
4,333,505 - -1.9
4,333,505 - +1.0
4,333,505 - +0.3
4,333,599 + -0.6
4,333,622 + +1.4
4,333,623 - -0.4
4,333,623 - -0.3
4,333,635 + +0.7
4,333,691 - OHPLBJKB_04117 0.15 -1.6
4,333,726 - OHPLBJKB_04117 0.19 -0.0
4,333,726 - OHPLBJKB_04117 0.19 +0.0
4,333,726 - OHPLBJKB_04117 0.19 -0.8
4,333,789 - OHPLBJKB_04117 0.25 +0.3
4,333,826 - OHPLBJKB_04117 0.28 -2.7
4,334,019 + OHPLBJKB_04117 0.47 -0.5
4,334,020 - OHPLBJKB_04117 0.47 -1.5
4,334,065 + OHPLBJKB_04117 0.52 -0.1
4,334,066 - OHPLBJKB_04117 0.52 -0.9
4,334,069 + OHPLBJKB_04117 0.52 -0.6
4,334,069 + OHPLBJKB_04117 0.52 -1.4
4,334,070 - OHPLBJKB_04117 0.52 +0.1
4,334,070 - OHPLBJKB_04117 0.52 -0.0
4,334,071 + OHPLBJKB_04117 0.52 -0.7
4,334,071 + OHPLBJKB_04117 0.52 -0.3
4,334,071 + OHPLBJKB_04117 0.52 +0.6
4,334,100 + OHPLBJKB_04117 0.55 -1.5
4,334,149 + OHPLBJKB_04117 0.60 -0.0
4,334,179 - OHPLBJKB_04117 0.63 -0.6
4,334,179 - OHPLBJKB_04117 0.63 -0.1
4,334,194 + OHPLBJKB_04117 0.64 -0.3
4,334,271 + OHPLBJKB_04117 0.72 -0.4

Or see this region's nucleotide sequence