Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04020

Experiment: bur MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04018 and OHPLBJKB_04019 overlap by 4 nucleotidesOHPLBJKB_04019 and OHPLBJKB_04020 are separated by 113 nucleotidesOHPLBJKB_04020 and OHPLBJKB_04021 are separated by 348 nucleotides OHPLBJKB_04018: OHPLBJKB_04018 - hypothetical protein, at 4,216,567 to 4,217,304 _04018 OHPLBJKB_04019: OHPLBJKB_04019 - putative lipoprotein GfcB, at 4,217,301 to 4,217,939 _04019 OHPLBJKB_04020: OHPLBJKB_04020 - hypothetical protein, at 4,218,053 to 4,218,295 _04020 OHPLBJKB_04021: OHPLBJKB_04021 - Glucose-6-phosphate isomerase, at 4,218,644 to 4,220,293 _04021 Position (kb) 4218 4219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 4217.176 kb on + strand, within OHPLBJKB_04018at 4217.176 kb on + strand, within OHPLBJKB_04018at 4217.176 kb on + strand, within OHPLBJKB_04018at 4217.177 kb on - strand, within OHPLBJKB_04018at 4217.298 kb on + strandat 4217.299 kb on - strandat 4217.527 kb on + strand, within OHPLBJKB_04019at 4217.532 kb on + strand, within OHPLBJKB_04019at 4217.532 kb on + strand, within OHPLBJKB_04019at 4217.533 kb on - strand, within OHPLBJKB_04019at 4217.601 kb on - strand, within OHPLBJKB_04019at 4217.624 kb on + strand, within OHPLBJKB_04019at 4217.624 kb on + strand, within OHPLBJKB_04019at 4217.749 kb on - strand, within OHPLBJKB_04019at 4217.771 kb on + strand, within OHPLBJKB_04019at 4217.780 kb on + strand, within OHPLBJKB_04019at 4217.780 kb on + strand, within OHPLBJKB_04019at 4217.780 kb on + strand, within OHPLBJKB_04019at 4217.780 kb on + strand, within OHPLBJKB_04019at 4217.781 kb on - strand, within OHPLBJKB_04019at 4217.781 kb on - strand, within OHPLBJKB_04019at 4217.781 kb on - strand, within OHPLBJKB_04019at 4217.781 kb on - strand, within OHPLBJKB_04019at 4217.782 kb on + strand, within OHPLBJKB_04019at 4217.782 kb on + strand, within OHPLBJKB_04019at 4217.782 kb on + strand, within OHPLBJKB_04019at 4217.782 kb on + strand, within OHPLBJKB_04019at 4217.782 kb on + strand, within OHPLBJKB_04019at 4217.782 kb on + strand, within OHPLBJKB_04019at 4217.783 kb on - strand, within OHPLBJKB_04019at 4217.783 kb on - strand, within OHPLBJKB_04019at 4217.783 kb on - strand, within OHPLBJKB_04019at 4217.783 kb on - strand, within OHPLBJKB_04019at 4217.783 kb on - strand, within OHPLBJKB_04019at 4217.783 kb on - strand, within OHPLBJKB_04019at 4217.783 kb on - strand, within OHPLBJKB_04019at 4217.801 kb on + strand, within OHPLBJKB_04019at 4217.801 kb on + strand, within OHPLBJKB_04019at 4217.802 kb on - strand, within OHPLBJKB_04019at 4217.902 kb on - strandat 4217.902 kb on - strandat 4217.904 kb on + strandat 4217.905 kb on - strandat 4217.905 kb on - strandat 4217.963 kb on + strandat 4217.988 kb on + strandat 4217.988 kb on + strandat 4218.000 kb on + strandat 4218.001 kb on - strandat 4218.042 kb on + strandat 4218.042 kb on + strandat 4218.043 kb on - strandat 4218.046 kb on + strandat 4218.046 kb on + strandat 4218.046 kb on + strandat 4218.046 kb on + strandat 4218.046 kb on + strandat 4218.046 kb on + strandat 4218.046 kb on + strandat 4218.046 kb on + strandat 4218.046 kb on + strandat 4218.046 kb on + strandat 4218.046 kb on + strandat 4218.047 kb on - strandat 4218.047 kb on - strandat 4218.047 kb on - strandat 4218.047 kb on - strandat 4218.047 kb on - strandat 4218.047 kb on - strandat 4218.047 kb on - strandat 4218.047 kb on - strandat 4218.047 kb on - strandat 4218.051 kb on + strandat 4218.051 kb on + strandat 4218.052 kb on - strandat 4218.052 kb on - strandat 4218.052 kb on - strandat 4218.052 kb on - strandat 4218.054 kb on + strandat 4218.095 kb on - strand, within OHPLBJKB_04020at 4218.175 kb on + strand, within OHPLBJKB_04020at 4218.263 kb on + strand, within OHPLBJKB_04020at 4218.360 kb on - strandat 4218.360 kb on - strandat 4218.438 kb on - strandat 4218.613 kb on + strandat 4218.691 kb on + strandat 4218.691 kb on + strandat 4218.691 kb on + strandat 4218.692 kb on - strandat 4218.736 kb on + strandat 4218.828 kb on + strand, within OHPLBJKB_04021at 4218.828 kb on + strand, within OHPLBJKB_04021at 4218.828 kb on + strand, within OHPLBJKB_04021at 4218.828 kb on + strand, within OHPLBJKB_04021at 4218.829 kb on - strand, within OHPLBJKB_04021at 4218.928 kb on - strand, within OHPLBJKB_04021at 4218.928 kb on - strand, within OHPLBJKB_04021at 4218.950 kb on - strand, within OHPLBJKB_04021at 4219.129 kb on - strand, within OHPLBJKB_04021at 4219.215 kb on + strand, within OHPLBJKB_04021at 4219.215 kb on + strand, within OHPLBJKB_04021at 4219.215 kb on + strand, within OHPLBJKB_04021at 4219.215 kb on + strand, within OHPLBJKB_04021at 4219.215 kb on + strand, within OHPLBJKB_04021at 4219.215 kb on + strand, within OHPLBJKB_04021at 4219.215 kb on + strand, within OHPLBJKB_04021at 4219.215 kb on + strand, within OHPLBJKB_04021at 4219.215 kb on + strand, within OHPLBJKB_04021at 4219.215 kb on + strand, within OHPLBJKB_04021at 4219.216 kb on - strand, within OHPLBJKB_04021at 4219.216 kb on - strand, within OHPLBJKB_04021at 4219.216 kb on - strand, within OHPLBJKB_04021at 4219.216 kb on - strand, within OHPLBJKB_04021at 4219.216 kb on - strand, within OHPLBJKB_04021at 4219.216 kb on - strand, within OHPLBJKB_04021at 4219.216 kb on - strand, within OHPLBJKB_04021at 4219.216 kb on - strand, within OHPLBJKB_04021at 4219.220 kb on - strand, within OHPLBJKB_04021at 4219.220 kb on - strand, within OHPLBJKB_04021at 4219.234 kb on + strand, within OHPLBJKB_04021at 4219.251 kb on + strand, within OHPLBJKB_04021at 4219.251 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.270 kb on + strand, within OHPLBJKB_04021at 4219.271 kb on - strand, within OHPLBJKB_04021at 4219.271 kb on - strand, within OHPLBJKB_04021at 4219.271 kb on - strand, within OHPLBJKB_04021at 4219.271 kb on - strand, within OHPLBJKB_04021at 4219.271 kb on - strand, within OHPLBJKB_04021at 4219.271 kb on - strand, within OHPLBJKB_04021at 4219.271 kb on - strand, within OHPLBJKB_04021at 4219.271 kb on - strand, within OHPLBJKB_04021at 4219.272 kb on + strand, within OHPLBJKB_04021at 4219.272 kb on + strand, within OHPLBJKB_04021at 4219.272 kb on + strand, within OHPLBJKB_04021at 4219.272 kb on + strand, within OHPLBJKB_04021at 4219.273 kb on - strand, within OHPLBJKB_04021at 4219.273 kb on - strand, within OHPLBJKB_04021at 4219.273 kb on - strand, within OHPLBJKB_04021

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI10
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4,217,176 + OHPLBJKB_04018 0.83 +0.8
4,217,176 + OHPLBJKB_04018 0.83 -0.5
4,217,176 + OHPLBJKB_04018 0.83 +0.1
4,217,177 - OHPLBJKB_04018 0.83 +0.5
4,217,298 + -1.7
4,217,299 - +0.4
4,217,527 + OHPLBJKB_04019 0.35 -0.7
4,217,532 + OHPLBJKB_04019 0.36 -1.5
4,217,532 + OHPLBJKB_04019 0.36 -0.8
4,217,533 - OHPLBJKB_04019 0.36 -2.4
4,217,601 - OHPLBJKB_04019 0.47 -1.1
4,217,624 + OHPLBJKB_04019 0.51 +1.0
4,217,624 + OHPLBJKB_04019 0.51 -1.6
4,217,749 - OHPLBJKB_04019 0.70 +1.4
4,217,771 + OHPLBJKB_04019 0.74 -0.5
4,217,780 + OHPLBJKB_04019 0.75 -0.4
4,217,780 + OHPLBJKB_04019 0.75 -0.6
4,217,780 + OHPLBJKB_04019 0.75 -1.7
4,217,780 + OHPLBJKB_04019 0.75 -0.5
4,217,781 - OHPLBJKB_04019 0.75 -1.1
4,217,781 - OHPLBJKB_04019 0.75 -0.4
4,217,781 - OHPLBJKB_04019 0.75 -0.1
4,217,781 - OHPLBJKB_04019 0.75 -1.3
4,217,782 + OHPLBJKB_04019 0.75 +0.6
4,217,782 + OHPLBJKB_04019 0.75 -1.1
4,217,782 + OHPLBJKB_04019 0.75 +1.0
4,217,782 + OHPLBJKB_04019 0.75 +0.4
4,217,782 + OHPLBJKB_04019 0.75 +0.8
4,217,782 + OHPLBJKB_04019 0.75 -0.6
4,217,783 - OHPLBJKB_04019 0.75 -1.9
4,217,783 - OHPLBJKB_04019 0.75 -0.2
4,217,783 - OHPLBJKB_04019 0.75 -1.4
4,217,783 - OHPLBJKB_04019 0.75 +0.1
4,217,783 - OHPLBJKB_04019 0.75 -0.8
4,217,783 - OHPLBJKB_04019 0.75 +0.4
4,217,783 - OHPLBJKB_04019 0.75 +1.2
4,217,801 + OHPLBJKB_04019 0.78 +0.7
4,217,801 + OHPLBJKB_04019 0.78 +0.9
4,217,802 - OHPLBJKB_04019 0.78 -1.6
4,217,902 - -1.7
4,217,902 - -0.3
4,217,904 + -1.8
4,217,905 - -0.3
4,217,905 - -0.5
4,217,963 + +0.7
4,217,988 + +0.6
4,217,988 + +0.2
4,218,000 + -1.8
4,218,001 - -0.7
4,218,042 + -0.6
4,218,042 + +0.3
4,218,043 - -1.4
4,218,046 + -0.6
4,218,046 + +1.5
4,218,046 + +0.2
4,218,046 + +0.1
4,218,046 + -0.9
4,218,046 + -1.2
4,218,046 + +0.9
4,218,046 + +7.1
4,218,046 + -0.5
4,218,046 + +1.7
4,218,046 + -0.7
4,218,047 - +0.4
4,218,047 - -0.8
4,218,047 - +0.1
4,218,047 - -0.9
4,218,047 - +0.2
4,218,047 - +0.1
4,218,047 - -0.4
4,218,047 - -2.3
4,218,047 - +0.3
4,218,051 + +0.2
4,218,051 + +0.3
4,218,052 - -0.8
4,218,052 - +1.7
4,218,052 - -0.3
4,218,052 - +1.3
4,218,054 + -1.6
4,218,095 - OHPLBJKB_04020 0.17 -0.2
4,218,175 + OHPLBJKB_04020 0.50 -0.7
4,218,263 + OHPLBJKB_04020 0.86 -0.5
4,218,360 - -0.5
4,218,360 - -0.4
4,218,438 - -0.0
4,218,613 + -0.2
4,218,691 + +0.3
4,218,691 + -1.8
4,218,691 + -1.2
4,218,692 - -1.7
4,218,736 + -0.9
4,218,828 + OHPLBJKB_04021 0.11 -0.8
4,218,828 + OHPLBJKB_04021 0.11 +0.1
4,218,828 + OHPLBJKB_04021 0.11 -1.1
4,218,828 + OHPLBJKB_04021 0.11 -0.4
4,218,829 - OHPLBJKB_04021 0.11 -0.8
4,218,928 - OHPLBJKB_04021 0.17 -0.0
4,218,928 - OHPLBJKB_04021 0.17 -2.7
4,218,950 - OHPLBJKB_04021 0.19 -1.7
4,219,129 - OHPLBJKB_04021 0.29 -0.4
4,219,215 + OHPLBJKB_04021 0.35 -1.1
4,219,215 + OHPLBJKB_04021 0.35 -0.8
4,219,215 + OHPLBJKB_04021 0.35 +0.3
4,219,215 + OHPLBJKB_04021 0.35 -0.2
4,219,215 + OHPLBJKB_04021 0.35 +1.2
4,219,215 + OHPLBJKB_04021 0.35 -0.4
4,219,215 + OHPLBJKB_04021 0.35 -0.2
4,219,215 + OHPLBJKB_04021 0.35 -1.3
4,219,215 + OHPLBJKB_04021 0.35 -1.0
4,219,215 + OHPLBJKB_04021 0.35 +1.1
4,219,216 - OHPLBJKB_04021 0.35 -0.6
4,219,216 - OHPLBJKB_04021 0.35 -1.4
4,219,216 - OHPLBJKB_04021 0.35 -1.9
4,219,216 - OHPLBJKB_04021 0.35 -1.0
4,219,216 - OHPLBJKB_04021 0.35 -0.1
4,219,216 - OHPLBJKB_04021 0.35 -0.5
4,219,216 - OHPLBJKB_04021 0.35 -1.4
4,219,216 - OHPLBJKB_04021 0.35 -1.9
4,219,220 - OHPLBJKB_04021 0.35 -1.2
4,219,220 - OHPLBJKB_04021 0.35 -0.4
4,219,234 + OHPLBJKB_04021 0.36 -0.1
4,219,251 + OHPLBJKB_04021 0.37 +1.1
4,219,251 + OHPLBJKB_04021 0.37 -1.6
4,219,270 + OHPLBJKB_04021 0.38 -0.8
4,219,270 + OHPLBJKB_04021 0.38 -0.1
4,219,270 + OHPLBJKB_04021 0.38 -1.1
4,219,270 + OHPLBJKB_04021 0.38 -0.8
4,219,270 + OHPLBJKB_04021 0.38 +0.2
4,219,270 + OHPLBJKB_04021 0.38 +0.8
4,219,270 + OHPLBJKB_04021 0.38 -0.6
4,219,270 + OHPLBJKB_04021 0.38 -1.8
4,219,270 + OHPLBJKB_04021 0.38 -1.0
4,219,270 + OHPLBJKB_04021 0.38 -0.2
4,219,270 + OHPLBJKB_04021 0.38 -0.6
4,219,271 - OHPLBJKB_04021 0.38 +1.1
4,219,271 - OHPLBJKB_04021 0.38 +0.1
4,219,271 - OHPLBJKB_04021 0.38 +1.0
4,219,271 - OHPLBJKB_04021 0.38 -3.2
4,219,271 - OHPLBJKB_04021 0.38 +0.6
4,219,271 - OHPLBJKB_04021 0.38 -2.0
4,219,271 - OHPLBJKB_04021 0.38 -0.4
4,219,271 - OHPLBJKB_04021 0.38 -0.9
4,219,272 + OHPLBJKB_04021 0.38 -1.3
4,219,272 + OHPLBJKB_04021 0.38 -1.1
4,219,272 + OHPLBJKB_04021 0.38 -2.1
4,219,272 + OHPLBJKB_04021 0.38 -1.5
4,219,273 - OHPLBJKB_04021 0.38 -0.0
4,219,273 - OHPLBJKB_04021 0.38 -1.0
4,219,273 - OHPLBJKB_04021 0.38 -1.8

Or see this region's nucleotide sequence