Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03522

Experiment: bur MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03521 and OHPLBJKB_03522 are separated by 104 nucleotidesOHPLBJKB_03522 and OHPLBJKB_03523 are separated by 122 nucleotidesOHPLBJKB_03523 and OHPLBJKB_03524 are separated by 254 nucleotides OHPLBJKB_03521: OHPLBJKB_03521 - putative fimbrial-like protein YadN, at 3,686,531 to 3,687,115 _03521 OHPLBJKB_03522: OHPLBJKB_03522 - putative fimbrial chaperone YadV, at 3,687,220 to 3,687,960 _03522 OHPLBJKB_03523: OHPLBJKB_03523 - hypothetical protein, at 3,688,083 to 3,688,361 _03523 OHPLBJKB_03524: OHPLBJKB_03524 - IS3 family transposase ISEhe3, at 3,688,616 to 3,689,230 _03524 Position (kb) 3687 3688Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3686.258 kb on + strandat 3686.260 kb on + strandat 3686.446 kb on + strandat 3686.545 kb on - strandat 3686.619 kb on + strand, within OHPLBJKB_03521at 3686.620 kb on - strand, within OHPLBJKB_03521at 3686.644 kb on + strand, within OHPLBJKB_03521at 3686.644 kb on + strand, within OHPLBJKB_03521at 3686.645 kb on - strand, within OHPLBJKB_03521at 3686.674 kb on + strand, within OHPLBJKB_03521at 3686.812 kb on + strand, within OHPLBJKB_03521at 3686.815 kb on + strand, within OHPLBJKB_03521at 3686.821 kb on + strand, within OHPLBJKB_03521at 3686.821 kb on + strand, within OHPLBJKB_03521at 3686.855 kb on - strand, within OHPLBJKB_03521at 3686.884 kb on + strand, within OHPLBJKB_03521at 3686.885 kb on - strand, within OHPLBJKB_03521at 3686.978 kb on + strand, within OHPLBJKB_03521at 3686.978 kb on + strand, within OHPLBJKB_03521at 3686.979 kb on - strand, within OHPLBJKB_03521at 3686.979 kb on - strand, within OHPLBJKB_03521at 3686.979 kb on - strand, within OHPLBJKB_03521at 3687.096 kb on - strandat 3687.241 kb on - strandat 3687.328 kb on - strand, within OHPLBJKB_03522at 3687.407 kb on - strand, within OHPLBJKB_03522at 3687.438 kb on + strand, within OHPLBJKB_03522at 3687.438 kb on + strand, within OHPLBJKB_03522at 3687.439 kb on - strand, within OHPLBJKB_03522at 3687.439 kb on - strand, within OHPLBJKB_03522at 3687.439 kb on - strand, within OHPLBJKB_03522at 3687.439 kb on - strand, within OHPLBJKB_03522at 3687.439 kb on - strand, within OHPLBJKB_03522at 3687.439 kb on - strand, within OHPLBJKB_03522at 3687.439 kb on - strand, within OHPLBJKB_03522at 3687.439 kb on - strand, within OHPLBJKB_03522at 3687.506 kb on + strand, within OHPLBJKB_03522at 3687.507 kb on - strand, within OHPLBJKB_03522at 3687.511 kb on + strand, within OHPLBJKB_03522at 3687.512 kb on - strand, within OHPLBJKB_03522at 3687.535 kb on - strand, within OHPLBJKB_03522at 3687.567 kb on - strand, within OHPLBJKB_03522at 3687.643 kb on - strand, within OHPLBJKB_03522at 3687.643 kb on - strand, within OHPLBJKB_03522at 3687.643 kb on - strand, within OHPLBJKB_03522at 3687.644 kb on + strand, within OHPLBJKB_03522at 3687.644 kb on + strand, within OHPLBJKB_03522at 3687.645 kb on - strand, within OHPLBJKB_03522at 3687.655 kb on + strand, within OHPLBJKB_03522at 3687.767 kb on - strand, within OHPLBJKB_03522at 3687.767 kb on - strand, within OHPLBJKB_03522at 3687.767 kb on - strand, within OHPLBJKB_03522at 3687.769 kb on + strand, within OHPLBJKB_03522at 3687.769 kb on + strand, within OHPLBJKB_03522at 3687.769 kb on + strand, within OHPLBJKB_03522at 3687.770 kb on - strand, within OHPLBJKB_03522at 3687.770 kb on - strand, within OHPLBJKB_03522at 3687.770 kb on - strand, within OHPLBJKB_03522at 3687.770 kb on - strand, within OHPLBJKB_03522at 3687.770 kb on - strand, within OHPLBJKB_03522at 3687.770 kb on - strand, within OHPLBJKB_03522at 3687.802 kb on - strand, within OHPLBJKB_03522at 3687.847 kb on - strand, within OHPLBJKB_03522at 3687.959 kb on - strandat 3687.959 kb on - strandat 3687.972 kb on + strandat 3687.972 kb on + strandat 3687.973 kb on - strandat 3687.973 kb on - strandat 3687.991 kb on + strandat 3688.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI10
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3,686,258 + -2.3
3,686,260 + +0.2
3,686,446 + -0.7
3,686,545 - +0.1
3,686,619 + OHPLBJKB_03521 0.15 -1.6
3,686,620 - OHPLBJKB_03521 0.15 +0.2
3,686,644 + OHPLBJKB_03521 0.19 -1.4
3,686,644 + OHPLBJKB_03521 0.19 +0.2
3,686,645 - OHPLBJKB_03521 0.19 +0.3
3,686,674 + OHPLBJKB_03521 0.24 +0.3
3,686,812 + OHPLBJKB_03521 0.48 -0.0
3,686,815 + OHPLBJKB_03521 0.49 -0.5
3,686,821 + OHPLBJKB_03521 0.50 +3.0
3,686,821 + OHPLBJKB_03521 0.50 -2.1
3,686,855 - OHPLBJKB_03521 0.55 -1.0
3,686,884 + OHPLBJKB_03521 0.60 -0.2
3,686,885 - OHPLBJKB_03521 0.61 +0.6
3,686,978 + OHPLBJKB_03521 0.76 -0.7
3,686,978 + OHPLBJKB_03521 0.76 +0.3
3,686,979 - OHPLBJKB_03521 0.77 +0.1
3,686,979 - OHPLBJKB_03521 0.77 -2.5
3,686,979 - OHPLBJKB_03521 0.77 -0.0
3,687,096 - -0.9
3,687,241 - +0.7
3,687,328 - OHPLBJKB_03522 0.15 +1.2
3,687,407 - OHPLBJKB_03522 0.25 -0.6
3,687,438 + OHPLBJKB_03522 0.29 -0.6
3,687,438 + OHPLBJKB_03522 0.29 -1.2
3,687,439 - OHPLBJKB_03522 0.30 +0.5
3,687,439 - OHPLBJKB_03522 0.30 -0.2
3,687,439 - OHPLBJKB_03522 0.30 +0.9
3,687,439 - OHPLBJKB_03522 0.30 +0.5
3,687,439 - OHPLBJKB_03522 0.30 -0.5
3,687,439 - OHPLBJKB_03522 0.30 -0.3
3,687,439 - OHPLBJKB_03522 0.30 -0.4
3,687,439 - OHPLBJKB_03522 0.30 +0.9
3,687,506 + OHPLBJKB_03522 0.39 +0.8
3,687,507 - OHPLBJKB_03522 0.39 +0.1
3,687,511 + OHPLBJKB_03522 0.39 +0.6
3,687,512 - OHPLBJKB_03522 0.39 -1.4
3,687,535 - OHPLBJKB_03522 0.43 +0.9
3,687,567 - OHPLBJKB_03522 0.47 +1.2
3,687,643 - OHPLBJKB_03522 0.57 +0.1
3,687,643 - OHPLBJKB_03522 0.57 +0.4
3,687,643 - OHPLBJKB_03522 0.57 +1.2
3,687,644 + OHPLBJKB_03522 0.57 -0.2
3,687,644 + OHPLBJKB_03522 0.57 -0.2
3,687,645 - OHPLBJKB_03522 0.57 +0.5
3,687,655 + OHPLBJKB_03522 0.59 -0.7
3,687,767 - OHPLBJKB_03522 0.74 -0.5
3,687,767 - OHPLBJKB_03522 0.74 +2.6
3,687,767 - OHPLBJKB_03522 0.74 +0.9
3,687,769 + OHPLBJKB_03522 0.74 -0.7
3,687,769 + OHPLBJKB_03522 0.74 +0.7
3,687,769 + OHPLBJKB_03522 0.74 +1.4
3,687,770 - OHPLBJKB_03522 0.74 +2.1
3,687,770 - OHPLBJKB_03522 0.74 +0.1
3,687,770 - OHPLBJKB_03522 0.74 +0.7
3,687,770 - OHPLBJKB_03522 0.74 +6.4
3,687,770 - OHPLBJKB_03522 0.74 +0.8
3,687,770 - OHPLBJKB_03522 0.74 +1.6
3,687,802 - OHPLBJKB_03522 0.79 -1.0
3,687,847 - OHPLBJKB_03522 0.85 -2.1
3,687,959 - +0.5
3,687,959 - +0.8
3,687,972 + -1.7
3,687,972 + +0.6
3,687,973 - -1.4
3,687,973 - -0.1
3,687,991 + +1.1
3,688,003 - +1.6

Or see this region's nucleotide sequence