Experiment: bur MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02793 and OHPLBJKB_02794 are separated by 494 nucleotides OHPLBJKB_02794 and OHPLBJKB_02795 are separated by 143 nucleotides
OHPLBJKB_02793: OHPLBJKB_02793 - Aquaporin Z, at 2,926,357 to 2,927,052
_02793
OHPLBJKB_02794: OHPLBJKB_02794 - Lysine exporter LysO, at 2,927,547 to 2,928,446
_02794
OHPLBJKB_02795: OHPLBJKB_02795 - Hydroxylamine reductase, at 2,928,590 to 2,930,242
_02795
Position (kb)
2927
2928
2929 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2926.566 kb on - strand, within OHPLBJKB_02793 at 2926.607 kb on - strand, within OHPLBJKB_02793 at 2926.610 kb on + strand, within OHPLBJKB_02793 at 2926.610 kb on + strand, within OHPLBJKB_02793 at 2926.610 kb on + strand, within OHPLBJKB_02793 at 2926.611 kb on - strand, within OHPLBJKB_02793 at 2926.611 kb on - strand, within OHPLBJKB_02793 at 2926.611 kb on - strand, within OHPLBJKB_02793 at 2926.654 kb on + strand, within OHPLBJKB_02793 at 2926.655 kb on - strand, within OHPLBJKB_02793 at 2926.655 kb on - strand, within OHPLBJKB_02793 at 2926.658 kb on + strand, within OHPLBJKB_02793 at 2926.659 kb on - strand, within OHPLBJKB_02793 at 2926.742 kb on - strand, within OHPLBJKB_02793 at 2926.763 kb on + strand, within OHPLBJKB_02793 at 2926.764 kb on - strand, within OHPLBJKB_02793 at 2926.775 kb on + strand, within OHPLBJKB_02793 at 2926.880 kb on + strand, within OHPLBJKB_02793 at 2926.880 kb on + strand, within OHPLBJKB_02793 at 2926.880 kb on + strand, within OHPLBJKB_02793 at 2926.888 kb on - strand, within OHPLBJKB_02793 at 2926.888 kb on - strand, within OHPLBJKB_02793 at 2926.961 kb on + strand, within OHPLBJKB_02793 at 2927.102 kb on + strand at 2927.102 kb on + strand at 2927.103 kb on - strand at 2927.104 kb on + strand at 2927.104 kb on + strand at 2927.104 kb on + strand at 2927.105 kb on - strand at 2927.105 kb on - strand at 2927.105 kb on - strand at 2927.105 kb on - strand at 2927.105 kb on - strand at 2927.105 kb on - strand at 2927.144 kb on - strand at 2927.144 kb on - strand at 2927.144 kb on - strand at 2927.152 kb on + strand at 2927.152 kb on + strand at 2927.152 kb on + strand at 2927.153 kb on - strand at 2927.153 kb on - strand at 2927.394 kb on - strand at 2927.398 kb on - strand at 2927.398 kb on - strand at 2927.410 kb on + strand at 2927.416 kb on + strand at 2927.431 kb on - strand at 2927.436 kb on - strand at 2927.452 kb on - strand at 2927.476 kb on + strand at 2927.631 kb on - strand at 2927.644 kb on + strand, within OHPLBJKB_02794 at 2927.658 kb on + strand, within OHPLBJKB_02794 at 2927.659 kb on - strand, within OHPLBJKB_02794 at 2927.664 kb on - strand, within OHPLBJKB_02794 at 2927.750 kb on + strand, within OHPLBJKB_02794 at 2927.750 kb on + strand, within OHPLBJKB_02794 at 2927.750 kb on + strand, within OHPLBJKB_02794 at 2927.754 kb on - strand, within OHPLBJKB_02794 at 2927.764 kb on + strand, within OHPLBJKB_02794 at 2927.768 kb on - strand, within OHPLBJKB_02794 at 2927.771 kb on + strand, within OHPLBJKB_02794 at 2927.771 kb on + strand, within OHPLBJKB_02794 at 2927.771 kb on + strand, within OHPLBJKB_02794 at 2927.771 kb on + strand, within OHPLBJKB_02794 at 2927.772 kb on - strand, within OHPLBJKB_02794 at 2927.772 kb on - strand, within OHPLBJKB_02794 at 2927.772 kb on - strand, within OHPLBJKB_02794 at 2927.775 kb on - strand, within OHPLBJKB_02794 at 2927.873 kb on - strand, within OHPLBJKB_02794 at 2927.887 kb on + strand, within OHPLBJKB_02794 at 2927.888 kb on - strand, within OHPLBJKB_02794 at 2927.888 kb on - strand, within OHPLBJKB_02794 at 2927.891 kb on - strand, within OHPLBJKB_02794 at 2927.891 kb on - strand, within OHPLBJKB_02794 at 2927.932 kb on + strand, within OHPLBJKB_02794 at 2927.974 kb on + strand, within OHPLBJKB_02794 at 2928.006 kb on - strand, within OHPLBJKB_02794 at 2928.036 kb on - strand, within OHPLBJKB_02794 at 2928.082 kb on + strand, within OHPLBJKB_02794 at 2928.095 kb on - strand, within OHPLBJKB_02794 at 2928.095 kb on - strand, within OHPLBJKB_02794 at 2928.107 kb on + strand, within OHPLBJKB_02794 at 2928.108 kb on - strand, within OHPLBJKB_02794 at 2928.128 kb on + strand, within OHPLBJKB_02794 at 2928.162 kb on + strand, within OHPLBJKB_02794 at 2928.162 kb on + strand, within OHPLBJKB_02794 at 2928.163 kb on - strand, within OHPLBJKB_02794 at 2928.182 kb on - strand, within OHPLBJKB_02794 at 2928.254 kb on + strand, within OHPLBJKB_02794 at 2928.255 kb on - strand, within OHPLBJKB_02794 at 2928.255 kb on - strand, within OHPLBJKB_02794 at 2928.255 kb on - strand, within OHPLBJKB_02794 at 2928.255 kb on - strand, within OHPLBJKB_02794 at 2928.257 kb on + strand, within OHPLBJKB_02794 at 2928.257 kb on + strand, within OHPLBJKB_02794 at 2928.257 kb on + strand, within OHPLBJKB_02794 at 2928.258 kb on - strand, within OHPLBJKB_02794 at 2928.258 kb on - strand, within OHPLBJKB_02794 at 2928.258 kb on - strand, within OHPLBJKB_02794 at 2928.258 kb on - strand, within OHPLBJKB_02794 at 2928.258 kb on - strand, within OHPLBJKB_02794 at 2928.308 kb on - strand, within OHPLBJKB_02794 at 2928.353 kb on + strand, within OHPLBJKB_02794 at 2928.398 kb on + strand at 2928.412 kb on + strand at 2928.444 kb on + strand at 2928.445 kb on - strand at 2928.647 kb on + strand at 2928.648 kb on - strand at 2928.648 kb on - strand at 2928.668 kb on - strand at 2928.838 kb on + strand, within OHPLBJKB_02795 at 2928.903 kb on + strand, within OHPLBJKB_02795 at 2928.903 kb on + strand, within OHPLBJKB_02795 at 2928.903 kb on + strand, within OHPLBJKB_02795 at 2929.009 kb on + strand, within OHPLBJKB_02795 at 2929.058 kb on + strand, within OHPLBJKB_02795 at 2929.082 kb on + strand, within OHPLBJKB_02795 at 2929.082 kb on + strand, within OHPLBJKB_02795 at 2929.082 kb on + strand, within OHPLBJKB_02795 at 2929.083 kb on - strand, within OHPLBJKB_02795 at 2929.123 kb on + strand, within OHPLBJKB_02795 at 2929.123 kb on + strand, within OHPLBJKB_02795 at 2929.124 kb on - strand, within OHPLBJKB_02795 at 2929.124 kb on - strand, within OHPLBJKB_02795 at 2929.262 kb on - strand, within OHPLBJKB_02795 at 2929.265 kb on + strand, within OHPLBJKB_02795 at 2929.265 kb on + strand, within OHPLBJKB_02795 at 2929.265 kb on + strand, within OHPLBJKB_02795 at 2929.266 kb on - strand, within OHPLBJKB_02795 at 2929.352 kb on + strand, within OHPLBJKB_02795 at 2929.352 kb on + strand, within OHPLBJKB_02795 at 2929.353 kb on - strand, within OHPLBJKB_02795
Per-strain Table
Position Strand Gene LocusTag Fraction bur MOI10 remove 2,926,566 - OHPLBJKB_02793 0.30 +0.3 2,926,607 - OHPLBJKB_02793 0.36 +0.7 2,926,610 + OHPLBJKB_02793 0.36 +0.2 2,926,610 + OHPLBJKB_02793 0.36 +1.9 2,926,610 + OHPLBJKB_02793 0.36 +0.9 2,926,611 - OHPLBJKB_02793 0.36 -0.6 2,926,611 - OHPLBJKB_02793 0.36 -0.1 2,926,611 - OHPLBJKB_02793 0.36 -0.0 2,926,654 + OHPLBJKB_02793 0.43 -0.5 2,926,655 - OHPLBJKB_02793 0.43 +1.1 2,926,655 - OHPLBJKB_02793 0.43 -1.9 2,926,658 + OHPLBJKB_02793 0.43 +0.3 2,926,659 - OHPLBJKB_02793 0.43 +0.4 2,926,742 - OHPLBJKB_02793 0.55 -1.4 2,926,763 + OHPLBJKB_02793 0.58 -1.1 2,926,764 - OHPLBJKB_02793 0.58 +0.7 2,926,775 + OHPLBJKB_02793 0.60 +0.5 2,926,880 + OHPLBJKB_02793 0.75 -0.4 2,926,880 + OHPLBJKB_02793 0.75 +0.2 2,926,880 + OHPLBJKB_02793 0.75 +0.3 2,926,888 - OHPLBJKB_02793 0.76 -1.3 2,926,888 - OHPLBJKB_02793 0.76 +1.2 2,926,961 + OHPLBJKB_02793 0.87 -1.6 2,927,102 + -0.1 2,927,102 + -0.7 2,927,103 - +0.3 2,927,104 + +0.3 2,927,104 + -0.5 2,927,104 + -0.4 2,927,105 - -0.9 2,927,105 - -1.8 2,927,105 - -0.0 2,927,105 - -1.8 2,927,105 - -0.4 2,927,105 - -0.7 2,927,144 - +1.2 2,927,144 - +0.2 2,927,144 - -0.1 2,927,152 + -0.6 2,927,152 + -1.1 2,927,152 + -1.0 2,927,153 - -0.1 2,927,153 - -0.5 2,927,394 - -0.4 2,927,398 - -1.8 2,927,398 - +0.1 2,927,410 + -0.1 2,927,416 + -1.3 2,927,431 - +0.4 2,927,436 - +0.3 2,927,452 - -0.7 2,927,476 + -0.8 2,927,631 - +0.1 2,927,644 + OHPLBJKB_02794 0.11 -1.4 2,927,658 + OHPLBJKB_02794 0.12 -0.4 2,927,659 - OHPLBJKB_02794 0.12 -0.6 2,927,664 - OHPLBJKB_02794 0.13 -1.5 2,927,750 + OHPLBJKB_02794 0.23 +0.5 2,927,750 + OHPLBJKB_02794 0.23 +0.8 2,927,750 + OHPLBJKB_02794 0.23 -0.2 2,927,754 - OHPLBJKB_02794 0.23 -0.6 2,927,764 + OHPLBJKB_02794 0.24 -0.0 2,927,768 - OHPLBJKB_02794 0.25 +0.3 2,927,771 + OHPLBJKB_02794 0.25 -0.5 2,927,771 + OHPLBJKB_02794 0.25 -0.4 2,927,771 + OHPLBJKB_02794 0.25 +1.9 2,927,771 + OHPLBJKB_02794 0.25 +0.6 2,927,772 - OHPLBJKB_02794 0.25 +0.4 2,927,772 - OHPLBJKB_02794 0.25 -1.0 2,927,772 - OHPLBJKB_02794 0.25 +1.2 2,927,775 - OHPLBJKB_02794 0.25 +1.3 2,927,873 - OHPLBJKB_02794 0.36 -2.5 2,927,887 + OHPLBJKB_02794 0.38 +1.7 2,927,888 - OHPLBJKB_02794 0.38 -0.0 2,927,888 - OHPLBJKB_02794 0.38 -1.9 2,927,891 - OHPLBJKB_02794 0.38 +1.2 2,927,891 - OHPLBJKB_02794 0.38 +0.7 2,927,932 + OHPLBJKB_02794 0.43 -0.2 2,927,974 + OHPLBJKB_02794 0.47 -0.6 2,928,006 - OHPLBJKB_02794 0.51 +0.3 2,928,036 - OHPLBJKB_02794 0.54 +0.1 2,928,082 + OHPLBJKB_02794 0.59 -2.8 2,928,095 - OHPLBJKB_02794 0.61 +1.6 2,928,095 - OHPLBJKB_02794 0.61 -0.1 2,928,107 + OHPLBJKB_02794 0.62 +0.0 2,928,108 - OHPLBJKB_02794 0.62 +0.5 2,928,128 + OHPLBJKB_02794 0.65 +0.9 2,928,162 + OHPLBJKB_02794 0.68 -0.2 2,928,162 + OHPLBJKB_02794 0.68 +0.4 2,928,163 - OHPLBJKB_02794 0.68 +0.5 2,928,182 - OHPLBJKB_02794 0.71 -0.2 2,928,254 + OHPLBJKB_02794 0.79 +0.2 2,928,255 - OHPLBJKB_02794 0.79 -0.7 2,928,255 - OHPLBJKB_02794 0.79 +0.3 2,928,255 - OHPLBJKB_02794 0.79 +0.3 2,928,255 - OHPLBJKB_02794 0.79 +1.4 2,928,257 + OHPLBJKB_02794 0.79 -0.1 2,928,257 + OHPLBJKB_02794 0.79 +0.1 2,928,257 + OHPLBJKB_02794 0.79 +0.4 2,928,258 - OHPLBJKB_02794 0.79 -1.7 2,928,258 - OHPLBJKB_02794 0.79 +1.6 2,928,258 - OHPLBJKB_02794 0.79 -0.4 2,928,258 - OHPLBJKB_02794 0.79 -0.3 2,928,258 - OHPLBJKB_02794 0.79 +1.6 2,928,308 - OHPLBJKB_02794 0.85 -1.3 2,928,353 + OHPLBJKB_02794 0.90 +0.2 2,928,398 + -0.8 2,928,412 + +1.0 2,928,444 + -1.1 2,928,445 - -1.0 2,928,647 + -0.3 2,928,648 - +0.9 2,928,648 - -0.7 2,928,668 - -0.1 2,928,838 + OHPLBJKB_02795 0.15 +0.0 2,928,903 + OHPLBJKB_02795 0.19 -1.6 2,928,903 + OHPLBJKB_02795 0.19 +0.9 2,928,903 + OHPLBJKB_02795 0.19 -1.3 2,929,009 + OHPLBJKB_02795 0.25 +0.0 2,929,058 + OHPLBJKB_02795 0.28 -0.3 2,929,082 + OHPLBJKB_02795 0.30 -0.5 2,929,082 + OHPLBJKB_02795 0.30 +0.5 2,929,082 + OHPLBJKB_02795 0.30 +0.9 2,929,083 - OHPLBJKB_02795 0.30 +2.8 2,929,123 + OHPLBJKB_02795 0.32 -0.5 2,929,123 + OHPLBJKB_02795 0.32 -0.4 2,929,124 - OHPLBJKB_02795 0.32 -0.7 2,929,124 - OHPLBJKB_02795 0.32 -0.4 2,929,262 - OHPLBJKB_02795 0.41 -0.8 2,929,265 + OHPLBJKB_02795 0.41 -0.7 2,929,265 + OHPLBJKB_02795 0.41 +1.3 2,929,265 + OHPLBJKB_02795 0.41 -1.7 2,929,266 - OHPLBJKB_02795 0.41 +1.1 2,929,352 + OHPLBJKB_02795 0.46 -2.4 2,929,352 + OHPLBJKB_02795 0.46 -0.1 2,929,353 - OHPLBJKB_02795 0.46 +0.0
Or see this region's nucleotide sequence