Experiment: bur MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02454 and OHPLBJKB_02455 are separated by 384 nucleotides OHPLBJKB_02455 and OHPLBJKB_02456 are separated by 361 nucleotides OHPLBJKB_02456 and OHPLBJKB_02457 overlap by 1 nucleotides OHPLBJKB_02457 and OHPLBJKB_02458 overlap by 4 nucleotides
OHPLBJKB_02454: OHPLBJKB_02454 - tRNA-Tyr, at 2,566,764 to 2,566,848
_02454
OHPLBJKB_02455: OHPLBJKB_02455 - tRNA-Tyr, at 2,567,233 to 2,567,317
_02455
OHPLBJKB_02456: OHPLBJKB_02456 - Respiratory nitrate reductase 1 gamma chain, at 2,567,679 to 2,568,356
_02456
OHPLBJKB_02457: OHPLBJKB_02457 - Nitrate reductase molybdenum cofactor assembly chaperone NarJ, at 2,568,356 to 2,569,066
_02457
OHPLBJKB_02458: OHPLBJKB_02458 - Respiratory nitrate reductase 1 beta chain, at 2,569,063 to 2,570,601
_02458
Position (kb)
2567
2568
2569 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2566.849 kb on + strand at 2566.849 kb on + strand at 2567.359 kb on + strand at 2567.359 kb on + strand at 2567.359 kb on + strand at 2567.509 kb on + strand at 2567.567 kb on + strand at 2567.567 kb on + strand at 2567.568 kb on - strand at 2567.584 kb on + strand at 2567.660 kb on + strand at 2567.660 kb on + strand at 2567.704 kb on + strand at 2567.704 kb on + strand at 2567.704 kb on + strand at 2567.708 kb on + strand at 2567.708 kb on + strand at 2567.708 kb on + strand at 2567.708 kb on + strand at 2567.708 kb on + strand at 2567.709 kb on - strand at 2567.709 kb on - strand at 2567.709 kb on - strand at 2568.128 kb on - strand, within OHPLBJKB_02456 at 2568.149 kb on + strand, within OHPLBJKB_02456 at 2568.183 kb on - strand, within OHPLBJKB_02456 at 2568.287 kb on + strand, within OHPLBJKB_02456 at 2568.312 kb on + strand at 2568.316 kb on + strand at 2568.316 kb on + strand at 2568.317 kb on - strand at 2568.323 kb on - strand at 2568.323 kb on - strand at 2568.342 kb on - strand at 2568.342 kb on - strand at 2568.357 kb on + strand at 2568.661 kb on + strand, within OHPLBJKB_02457 at 2568.708 kb on + strand, within OHPLBJKB_02457 at 2568.753 kb on - strand, within OHPLBJKB_02457 at 2568.775 kb on - strand, within OHPLBJKB_02457 at 2568.839 kb on + strand, within OHPLBJKB_02457 at 2568.840 kb on - strand, within OHPLBJKB_02457 at 2569.221 kb on + strand, within OHPLBJKB_02458 at 2569.248 kb on - strand, within OHPLBJKB_02458 at 2569.252 kb on - strand, within OHPLBJKB_02458 at 2569.252 kb on - strand, within OHPLBJKB_02458 at 2569.265 kb on + strand, within OHPLBJKB_02458 at 2569.271 kb on + strand, within OHPLBJKB_02458 at 2569.271 kb on + strand, within OHPLBJKB_02458 at 2569.272 kb on - strand, within OHPLBJKB_02458
Per-strain Table
Position Strand Gene LocusTag Fraction bur MOI10 remove 2,566,849 + -0.5 2,566,849 + +1.3 2,567,359 + +0.1 2,567,359 + +4.1 2,567,359 + +0.8 2,567,509 + +0.6 2,567,567 + +1.5 2,567,567 + -0.8 2,567,568 - +1.1 2,567,584 + +0.5 2,567,660 + -0.8 2,567,660 + +0.4 2,567,704 + +0.7 2,567,704 + -1.4 2,567,704 + -1.4 2,567,708 + +2.0 2,567,708 + +0.5 2,567,708 + +0.2 2,567,708 + +0.2 2,567,708 + -1.6 2,567,709 - +0.3 2,567,709 - +0.0 2,567,709 - +0.4 2,568,128 - OHPLBJKB_02456 0.66 -0.1 2,568,149 + OHPLBJKB_02456 0.69 +0.5 2,568,183 - OHPLBJKB_02456 0.74 -2.1 2,568,287 + OHPLBJKB_02456 0.90 -0.1 2,568,312 + -0.9 2,568,316 + +0.7 2,568,316 + -2.1 2,568,317 - +0.4 2,568,323 - -0.2 2,568,323 - -0.1 2,568,342 - -0.3 2,568,342 - -0.8 2,568,357 + -0.7 2,568,661 + OHPLBJKB_02457 0.43 -0.3 2,568,708 + OHPLBJKB_02457 0.50 +0.4 2,568,753 - OHPLBJKB_02457 0.56 -1.9 2,568,775 - OHPLBJKB_02457 0.59 -2.2 2,568,839 + OHPLBJKB_02457 0.68 -0.6 2,568,840 - OHPLBJKB_02457 0.68 +0.8 2,569,221 + OHPLBJKB_02458 0.10 +1.4 2,569,248 - OHPLBJKB_02458 0.12 +0.2 2,569,252 - OHPLBJKB_02458 0.12 +0.1 2,569,252 - OHPLBJKB_02458 0.12 +0.1 2,569,265 + OHPLBJKB_02458 0.13 -1.9 2,569,271 + OHPLBJKB_02458 0.14 -0.6 2,569,271 + OHPLBJKB_02458 0.14 -0.6 2,569,272 - OHPLBJKB_02458 0.14 -0.2
Or see this region's nucleotide sequence