Experiment: bur MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00598 and OHPLBJKB_00599 overlap by 11 nucleotides OHPLBJKB_00599 and OHPLBJKB_00600 are separated by 2 nucleotides OHPLBJKB_00600 and OHPLBJKB_00601 are separated by 37 nucleotides OHPLBJKB_00601 and OHPLBJKB_00602 are separated by 146 nucleotides OHPLBJKB_00602 and OHPLBJKB_00603 are separated by 3 nucleotides
OHPLBJKB_00598: OHPLBJKB_00598 - hypothetical protein, at 611,612 to 611,911
_00598
OHPLBJKB_00599: OHPLBJKB_00599 - Inner membrane protein YqjE, at 611,901 to 612,305
_00599
OHPLBJKB_00600: OHPLBJKB_00600 - putative protein YqjD, at 612,308 to 612,613
_00600
OHPLBJKB_00601: OHPLBJKB_00601 - Protein YqjC, at 612,651 to 613,019
_00601
OHPLBJKB_00602: OHPLBJKB_00602 - Modulator protein MzrA, at 613,166 to 613,549
_00602
OHPLBJKB_00603: OHPLBJKB_00603 - Inner membrane protein YqjA, at 613,553 to 614,215
_00603
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 611.704 kb on + strand, within OHPLBJKB_00598 at 611.705 kb on - strand, within OHPLBJKB_00598 at 611.705 kb on - strand, within OHPLBJKB_00598 at 611.705 kb on - strand, within OHPLBJKB_00598 at 611.705 kb on - strand, within OHPLBJKB_00598 at 611.705 kb on - strand, within OHPLBJKB_00598 at 611.708 kb on - strand, within OHPLBJKB_00598 at 611.708 kb on - strand, within OHPLBJKB_00598 at 611.708 kb on - strand, within OHPLBJKB_00598 at 611.708 kb on - strand, within OHPLBJKB_00598 at 611.708 kb on - strand, within OHPLBJKB_00598 at 611.771 kb on + strand, within OHPLBJKB_00598 at 611.771 kb on + strand, within OHPLBJKB_00598 at 611.779 kb on + strand, within OHPLBJKB_00598 at 611.881 kb on + strand, within OHPLBJKB_00598 at 611.960 kb on + strand, within OHPLBJKB_00599 at 611.990 kb on + strand, within OHPLBJKB_00599 at 611.995 kb on - strand, within OHPLBJKB_00599 at 611.995 kb on - strand, within OHPLBJKB_00599 at 612.024 kb on + strand, within OHPLBJKB_00599 at 612.089 kb on + strand, within OHPLBJKB_00599 at 612.090 kb on - strand, within OHPLBJKB_00599 at 612.093 kb on + strand, within OHPLBJKB_00599 at 612.093 kb on + strand, within OHPLBJKB_00599 at 612.111 kb on - strand, within OHPLBJKB_00599 at 612.111 kb on - strand, within OHPLBJKB_00599 at 612.111 kb on - strand, within OHPLBJKB_00599 at 612.111 kb on - strand, within OHPLBJKB_00599 at 612.171 kb on - strand, within OHPLBJKB_00599 at 612.171 kb on - strand, within OHPLBJKB_00599 at 612.171 kb on - strand, within OHPLBJKB_00599 at 612.305 kb on + strand at 612.309 kb on + strand at 612.338 kb on + strand at 612.390 kb on + strand, within OHPLBJKB_00600 at 612.390 kb on + strand, within OHPLBJKB_00600 at 612.390 kb on + strand, within OHPLBJKB_00600 at 612.390 kb on + strand, within OHPLBJKB_00600 at 612.390 kb on + strand, within OHPLBJKB_00600 at 612.390 kb on + strand, within OHPLBJKB_00600 at 612.390 kb on + strand, within OHPLBJKB_00600 at 612.390 kb on + strand, within OHPLBJKB_00600 at 612.391 kb on - strand, within OHPLBJKB_00600 at 612.391 kb on - strand, within OHPLBJKB_00600 at 612.493 kb on + strand, within OHPLBJKB_00600 at 612.538 kb on + strand, within OHPLBJKB_00600 at 612.538 kb on + strand, within OHPLBJKB_00600 at 612.538 kb on + strand, within OHPLBJKB_00600 at 612.538 kb on + strand, within OHPLBJKB_00600 at 612.538 kb on + strand, within OHPLBJKB_00600 at 612.539 kb on - strand, within OHPLBJKB_00600 at 612.596 kb on - strand at 612.613 kb on + strand at 612.613 kb on + strand at 612.614 kb on - strand at 612.631 kb on + strand at 612.631 kb on + strand at 612.631 kb on + strand at 612.632 kb on - strand at 612.632 kb on - strand at 612.632 kb on - strand at 612.632 kb on - strand at 612.632 kb on - strand at 612.632 kb on - strand at 612.636 kb on - strand at 612.636 kb on - strand at 612.642 kb on + strand at 612.642 kb on + strand at 612.643 kb on - strand at 612.652 kb on + strand at 612.830 kb on + strand, within OHPLBJKB_00601 at 612.866 kb on + strand, within OHPLBJKB_00601 at 612.910 kb on + strand, within OHPLBJKB_00601 at 612.910 kb on + strand, within OHPLBJKB_00601 at 612.910 kb on + strand, within OHPLBJKB_00601 at 612.911 kb on - strand, within OHPLBJKB_00601 at 612.911 kb on - strand, within OHPLBJKB_00601 at 612.930 kb on - strand, within OHPLBJKB_00601 at 612.964 kb on + strand, within OHPLBJKB_00601 at 612.964 kb on + strand, within OHPLBJKB_00601 at 612.964 kb on + strand, within OHPLBJKB_00601 at 612.964 kb on + strand, within OHPLBJKB_00601 at 612.964 kb on + strand, within OHPLBJKB_00601 at 612.965 kb on - strand, within OHPLBJKB_00601 at 612.965 kb on - strand, within OHPLBJKB_00601 at 612.969 kb on - strand, within OHPLBJKB_00601 at 612.969 kb on - strand, within OHPLBJKB_00601 at 612.977 kb on + strand, within OHPLBJKB_00601 at 612.978 kb on - strand, within OHPLBJKB_00601 at 613.000 kb on - strand at 613.000 kb on - strand at 613.000 kb on - strand at 613.013 kb on - strand at 613.048 kb on + strand at 613.049 kb on - strand at 613.049 kb on - strand at 613.051 kb on + strand at 613.051 kb on + strand at 613.051 kb on + strand at 613.052 kb on - strand at 613.052 kb on - strand at 613.052 kb on - strand at 613.052 kb on - strand at 613.052 kb on - strand at 613.106 kb on - strand at 613.112 kb on - strand at 613.120 kb on - strand at 613.145 kb on + strand at 613.187 kb on - strand at 613.226 kb on - strand, within OHPLBJKB_00602 at 613.226 kb on - strand, within OHPLBJKB_00602 at 613.248 kb on + strand, within OHPLBJKB_00602 at 613.249 kb on - strand, within OHPLBJKB_00602 at 613.249 kb on - strand, within OHPLBJKB_00602 at 613.249 kb on - strand, within OHPLBJKB_00602 at 613.249 kb on - strand, within OHPLBJKB_00602 at 613.315 kb on + strand, within OHPLBJKB_00602 at 613.315 kb on + strand, within OHPLBJKB_00602 at 613.315 kb on + strand, within OHPLBJKB_00602 at 613.320 kb on - strand, within OHPLBJKB_00602 at 613.320 kb on - strand, within OHPLBJKB_00602 at 613.345 kb on + strand, within OHPLBJKB_00602 at 613.441 kb on + strand, within OHPLBJKB_00602 at 613.496 kb on + strand, within OHPLBJKB_00602 at 613.496 kb on + strand, within OHPLBJKB_00602 at 613.496 kb on + strand, within OHPLBJKB_00602 at 613.541 kb on + strand at 613.542 kb on - strand at 613.665 kb on + strand, within OHPLBJKB_00603 at 613.666 kb on - strand, within OHPLBJKB_00603 at 613.698 kb on + strand, within OHPLBJKB_00603 at 613.698 kb on + strand, within OHPLBJKB_00603 at 613.698 kb on + strand, within OHPLBJKB_00603 at 613.698 kb on + strand, within OHPLBJKB_00603 at 613.722 kb on - strand, within OHPLBJKB_00603 at 613.822 kb on + strand, within OHPLBJKB_00603 at 613.823 kb on - strand, within OHPLBJKB_00603 at 613.836 kb on - strand, within OHPLBJKB_00603 at 613.956 kb on + strand, within OHPLBJKB_00603 at 613.956 kb on + strand, within OHPLBJKB_00603 at 613.956 kb on + strand, within OHPLBJKB_00603 at 613.957 kb on - strand, within OHPLBJKB_00603
Per-strain Table
Position Strand Gene LocusTag Fraction bur MOI10 remove 611,704 + OHPLBJKB_00598 0.31 -1.8 611,705 - OHPLBJKB_00598 0.31 -1.4 611,705 - OHPLBJKB_00598 0.31 +0.2 611,705 - OHPLBJKB_00598 0.31 +0.0 611,705 - OHPLBJKB_00598 0.31 +1.1 611,705 - OHPLBJKB_00598 0.31 -1.7 611,708 - OHPLBJKB_00598 0.32 +1.9 611,708 - OHPLBJKB_00598 0.32 -0.1 611,708 - OHPLBJKB_00598 0.32 -0.6 611,708 - OHPLBJKB_00598 0.32 -0.8 611,708 - OHPLBJKB_00598 0.32 +0.5 611,771 + OHPLBJKB_00598 0.53 -0.5 611,771 + OHPLBJKB_00598 0.53 -2.2 611,779 + OHPLBJKB_00598 0.56 -0.6 611,881 + OHPLBJKB_00598 0.90 -0.2 611,960 + OHPLBJKB_00599 0.15 -2.0 611,990 + OHPLBJKB_00599 0.22 +0.3 611,995 - OHPLBJKB_00599 0.23 -0.4 611,995 - OHPLBJKB_00599 0.23 -1.0 612,024 + OHPLBJKB_00599 0.30 -0.2 612,089 + OHPLBJKB_00599 0.46 +0.1 612,090 - OHPLBJKB_00599 0.47 -0.5 612,093 + OHPLBJKB_00599 0.47 +0.1 612,093 + OHPLBJKB_00599 0.47 +0.1 612,111 - OHPLBJKB_00599 0.52 -0.1 612,111 - OHPLBJKB_00599 0.52 -0.5 612,111 - OHPLBJKB_00599 0.52 +1.8 612,111 - OHPLBJKB_00599 0.52 +0.1 612,171 - OHPLBJKB_00599 0.67 -0.6 612,171 - OHPLBJKB_00599 0.67 +0.1 612,171 - OHPLBJKB_00599 0.67 -0.9 612,305 + -2.4 612,309 + -0.1 612,338 + -1.1 612,390 + OHPLBJKB_00600 0.27 +0.5 612,390 + OHPLBJKB_00600 0.27 +0.5 612,390 + OHPLBJKB_00600 0.27 -1.9 612,390 + OHPLBJKB_00600 0.27 -0.8 612,390 + OHPLBJKB_00600 0.27 +1.3 612,390 + OHPLBJKB_00600 0.27 -2.6 612,390 + OHPLBJKB_00600 0.27 -0.2 612,390 + OHPLBJKB_00600 0.27 +0.6 612,391 - OHPLBJKB_00600 0.27 -0.7 612,391 - OHPLBJKB_00600 0.27 +0.8 612,493 + OHPLBJKB_00600 0.60 -1.2 612,538 + OHPLBJKB_00600 0.75 +0.8 612,538 + OHPLBJKB_00600 0.75 +0.2 612,538 + OHPLBJKB_00600 0.75 +0.1 612,538 + OHPLBJKB_00600 0.75 -0.5 612,538 + OHPLBJKB_00600 0.75 -2.7 612,539 - OHPLBJKB_00600 0.75 +0.6 612,596 - +0.6 612,613 + -0.8 612,613 + +0.5 612,614 - -0.4 612,631 + -0.6 612,631 + -0.0 612,631 + -1.0 612,632 - +0.6 612,632 - -0.0 612,632 - -1.1 612,632 - -0.0 612,632 - -1.8 612,632 - -0.9 612,636 - -0.7 612,636 - +0.2 612,642 + +1.2 612,642 + +2.0 612,643 - -1.6 612,652 + +0.3 612,830 + OHPLBJKB_00601 0.49 +0.3 612,866 + OHPLBJKB_00601 0.58 +0.4 612,910 + OHPLBJKB_00601 0.70 -0.6 612,910 + OHPLBJKB_00601 0.70 +0.3 612,910 + OHPLBJKB_00601 0.70 -0.4 612,911 - OHPLBJKB_00601 0.70 +0.7 612,911 - OHPLBJKB_00601 0.70 +0.3 612,930 - OHPLBJKB_00601 0.76 -0.8 612,964 + OHPLBJKB_00601 0.85 -0.1 612,964 + OHPLBJKB_00601 0.85 -0.5 612,964 + OHPLBJKB_00601 0.85 +0.1 612,964 + OHPLBJKB_00601 0.85 +0.1 612,964 + OHPLBJKB_00601 0.85 +0.9 612,965 - OHPLBJKB_00601 0.85 -2.2 612,965 - OHPLBJKB_00601 0.85 +0.8 612,969 - OHPLBJKB_00601 0.86 +1.5 612,969 - OHPLBJKB_00601 0.86 -0.5 612,977 + OHPLBJKB_00601 0.88 +0.3 612,978 - OHPLBJKB_00601 0.89 -0.2 613,000 - +2.2 613,000 - -0.1 613,000 - -0.2 613,013 - +0.2 613,048 + +0.1 613,049 - +0.5 613,049 - +0.7 613,051 + -0.1 613,051 + +0.9 613,051 + -0.5 613,052 - +0.4 613,052 - -0.3 613,052 - +0.5 613,052 - +0.3 613,052 - -0.2 613,106 - -2.2 613,112 - -1.5 613,120 - +0.2 613,145 + -1.5 613,187 - -0.4 613,226 - OHPLBJKB_00602 0.16 -0.3 613,226 - OHPLBJKB_00602 0.16 -0.7 613,248 + OHPLBJKB_00602 0.21 -1.5 613,249 - OHPLBJKB_00602 0.22 -2.5 613,249 - OHPLBJKB_00602 0.22 -1.9 613,249 - OHPLBJKB_00602 0.22 -0.9 613,249 - OHPLBJKB_00602 0.22 -1.4 613,315 + OHPLBJKB_00602 0.39 -0.0 613,315 + OHPLBJKB_00602 0.39 +0.3 613,315 + OHPLBJKB_00602 0.39 -0.9 613,320 - OHPLBJKB_00602 0.40 +0.6 613,320 - OHPLBJKB_00602 0.40 -0.6 613,345 + OHPLBJKB_00602 0.47 -2.5 613,441 + OHPLBJKB_00602 0.72 -1.5 613,496 + OHPLBJKB_00602 0.86 -0.3 613,496 + OHPLBJKB_00602 0.86 +1.3 613,496 + OHPLBJKB_00602 0.86 -0.0 613,541 + -2.8 613,542 - +0.1 613,665 + OHPLBJKB_00603 0.17 -1.4 613,666 - OHPLBJKB_00603 0.17 +1.9 613,698 + OHPLBJKB_00603 0.22 +1.1 613,698 + OHPLBJKB_00603 0.22 +0.3 613,698 + OHPLBJKB_00603 0.22 -0.2 613,698 + OHPLBJKB_00603 0.22 +0.6 613,722 - OHPLBJKB_00603 0.25 -1.1 613,822 + OHPLBJKB_00603 0.41 -1.2 613,823 - OHPLBJKB_00603 0.41 -0.4 613,836 - OHPLBJKB_00603 0.43 -1.6 613,956 + OHPLBJKB_00603 0.61 +0.7 613,956 + OHPLBJKB_00603 0.61 -1.4 613,956 + OHPLBJKB_00603 0.61 +0.5 613,957 - OHPLBJKB_00603 0.61 -1.4
Or see this region's nucleotide sequence