Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00199

Experiment: bur MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00198 and OHPLBJKB_00199 are separated by 628 nucleotidesOHPLBJKB_00199 and OHPLBJKB_00200 are separated by 12 nucleotides OHPLBJKB_00198: OHPLBJKB_00198 - hypothetical protein, at 215,984 to 217,099 _00198 OHPLBJKB_00199: OHPLBJKB_00199 - Arsenate reductase, at 217,728 to 218,153 _00199 OHPLBJKB_00200: OHPLBJKB_00200 - Arsenical pump membrane protein, at 218,166 to 219,455 _00200 Position (kb) 217 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 216.865 kb on - strand, within OHPLBJKB_00198at 217.067 kb on - strandat 217.212 kb on - strandat 217.217 kb on + strandat 217.392 kb on - strandat 217.501 kb on + strandat 217.502 kb on - strandat 217.502 kb on - strandat 217.611 kb on + strandat 217.611 kb on + strandat 217.612 kb on - strandat 217.612 kb on - strandat 217.617 kb on - strandat 217.619 kb on + strandat 217.620 kb on - strandat 217.620 kb on - strandat 217.680 kb on + strandat 217.684 kb on + strandat 217.684 kb on + strandat 217.699 kb on + strandat 217.902 kb on - strand, within OHPLBJKB_00199at 218.102 kb on + strand, within OHPLBJKB_00199at 218.102 kb on + strand, within OHPLBJKB_00199at 218.106 kb on - strand, within OHPLBJKB_00199at 218.106 kb on - strand, within OHPLBJKB_00199at 218.134 kb on + strandat 218.134 kb on + strandat 218.134 kb on + strandat 218.141 kb on + strandat 218.141 kb on + strandat 218.153 kb on + strandat 218.153 kb on + strandat 218.154 kb on - strandat 218.154 kb on - strandat 218.154 kb on - strandat 218.167 kb on + strandat 218.167 kb on + strandat 218.168 kb on - strandat 218.168 kb on - strandat 218.187 kb on + strandat 218.235 kb on - strandat 218.251 kb on + strandat 218.251 kb on + strandat 218.251 kb on + strandat 218.252 kb on - strandat 218.252 kb on - strandat 218.252 kb on - strandat 218.255 kb on - strandat 218.255 kb on - strandat 218.255 kb on - strandat 218.273 kb on + strandat 218.273 kb on + strandat 218.289 kb on + strandat 218.289 kb on + strandat 218.290 kb on - strandat 218.290 kb on - strandat 218.290 kb on - strandat 218.305 kb on - strand, within OHPLBJKB_00200at 218.368 kb on + strand, within OHPLBJKB_00200at 218.369 kb on - strand, within OHPLBJKB_00200at 218.444 kb on + strand, within OHPLBJKB_00200at 218.445 kb on - strand, within OHPLBJKB_00200at 218.445 kb on - strand, within OHPLBJKB_00200at 218.453 kb on + strand, within OHPLBJKB_00200at 218.456 kb on + strand, within OHPLBJKB_00200at 218.457 kb on - strand, within OHPLBJKB_00200at 218.457 kb on - strand, within OHPLBJKB_00200at 218.545 kb on + strand, within OHPLBJKB_00200at 218.545 kb on + strand, within OHPLBJKB_00200at 218.546 kb on - strand, within OHPLBJKB_00200at 218.587 kb on + strand, within OHPLBJKB_00200at 218.587 kb on + strand, within OHPLBJKB_00200at 218.587 kb on + strand, within OHPLBJKB_00200at 218.587 kb on + strand, within OHPLBJKB_00200at 218.588 kb on - strand, within OHPLBJKB_00200at 218.588 kb on - strand, within OHPLBJKB_00200at 218.588 kb on - strand, within OHPLBJKB_00200at 218.588 kb on - strand, within OHPLBJKB_00200at 218.588 kb on - strand, within OHPLBJKB_00200at 218.588 kb on - strand, within OHPLBJKB_00200at 218.588 kb on - strand, within OHPLBJKB_00200at 218.639 kb on + strand, within OHPLBJKB_00200at 218.648 kb on + strand, within OHPLBJKB_00200at 218.649 kb on - strand, within OHPLBJKB_00200at 218.679 kb on + strand, within OHPLBJKB_00200at 218.679 kb on + strand, within OHPLBJKB_00200at 218.679 kb on + strand, within OHPLBJKB_00200at 218.679 kb on + strand, within OHPLBJKB_00200at 218.679 kb on + strand, within OHPLBJKB_00200at 218.680 kb on - strand, within OHPLBJKB_00200at 218.680 kb on - strand, within OHPLBJKB_00200at 218.789 kb on + strand, within OHPLBJKB_00200at 218.789 kb on + strand, within OHPLBJKB_00200at 218.789 kb on + strand, within OHPLBJKB_00200at 218.790 kb on - strand, within OHPLBJKB_00200at 218.839 kb on + strand, within OHPLBJKB_00200at 218.840 kb on - strand, within OHPLBJKB_00200at 218.840 kb on - strand, within OHPLBJKB_00200at 218.874 kb on + strand, within OHPLBJKB_00200at 218.874 kb on + strand, within OHPLBJKB_00200at 218.874 kb on + strand, within OHPLBJKB_00200at 218.874 kb on + strand, within OHPLBJKB_00200at 218.874 kb on + strand, within OHPLBJKB_00200at 218.874 kb on + strand, within OHPLBJKB_00200at 218.874 kb on + strand, within OHPLBJKB_00200at 218.874 kb on + strand, within OHPLBJKB_00200at 218.874 kb on + strand, within OHPLBJKB_00200at 218.875 kb on - strand, within OHPLBJKB_00200at 218.875 kb on - strand, within OHPLBJKB_00200at 218.875 kb on - strand, within OHPLBJKB_00200at 218.875 kb on - strand, within OHPLBJKB_00200at 218.875 kb on - strand, within OHPLBJKB_00200at 218.875 kb on - strand, within OHPLBJKB_00200at 218.875 kb on - strand, within OHPLBJKB_00200at 218.875 kb on - strand, within OHPLBJKB_00200at 218.875 kb on - strand, within OHPLBJKB_00200at 218.933 kb on - strand, within OHPLBJKB_00200at 218.993 kb on + strand, within OHPLBJKB_00200at 218.993 kb on + strand, within OHPLBJKB_00200at 218.993 kb on + strand, within OHPLBJKB_00200at 218.993 kb on + strand, within OHPLBJKB_00200at 218.993 kb on + strand, within OHPLBJKB_00200at 218.993 kb on + strand, within OHPLBJKB_00200at 218.994 kb on - strand, within OHPLBJKB_00200at 219.060 kb on - strand, within OHPLBJKB_00200at 219.070 kb on - strand, within OHPLBJKB_00200

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI10
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216,865 - OHPLBJKB_00198 0.79 +0.3
217,067 - +0.9
217,212 - -1.2
217,217 + -0.1
217,392 - -1.3
217,501 + +1.3
217,502 - -0.4
217,502 - -3.4
217,611 + +0.4
217,611 + -1.3
217,612 - +1.1
217,612 - -0.9
217,617 - +4.1
217,619 + +0.2
217,620 - +0.4
217,620 - -1.7
217,680 + +0.3
217,684 + +0.4
217,684 + -0.4
217,699 + -0.7
217,902 - OHPLBJKB_00199 0.41 +0.1
218,102 + OHPLBJKB_00199 0.88 -1.6
218,102 + OHPLBJKB_00199 0.88 +0.9
218,106 - OHPLBJKB_00199 0.89 +0.3
218,106 - OHPLBJKB_00199 0.89 -1.5
218,134 + +1.6
218,134 + -0.0
218,134 + +1.1
218,141 + +0.8
218,141 + -0.2
218,153 + -1.5
218,153 + -0.7
218,154 - -0.4
218,154 - -0.7
218,154 - +0.7
218,167 + +1.7
218,167 + -0.8
218,168 - -1.0
218,168 - -1.0
218,187 + +0.4
218,235 - +1.3
218,251 + +0.2
218,251 + -1.6
218,251 + -2.0
218,252 - -1.1
218,252 - -0.6
218,252 - -0.3
218,255 - -0.4
218,255 - +0.5
218,255 - +1.0
218,273 + +0.1
218,273 + -1.5
218,289 + +1.4
218,289 + -2.2
218,290 - +0.5
218,290 - -0.4
218,290 - -0.9
218,305 - OHPLBJKB_00200 0.11 +0.1
218,368 + OHPLBJKB_00200 0.16 -0.4
218,369 - OHPLBJKB_00200 0.16 +0.4
218,444 + OHPLBJKB_00200 0.22 -1.3
218,445 - OHPLBJKB_00200 0.22 +1.7
218,445 - OHPLBJKB_00200 0.22 -0.0
218,453 + OHPLBJKB_00200 0.22 +2.1
218,456 + OHPLBJKB_00200 0.22 -1.3
218,457 - OHPLBJKB_00200 0.23 -0.0
218,457 - OHPLBJKB_00200 0.23 +0.7
218,545 + OHPLBJKB_00200 0.29 -1.3
218,545 + OHPLBJKB_00200 0.29 -0.8
218,546 - OHPLBJKB_00200 0.29 -0.9
218,587 + OHPLBJKB_00200 0.33 -0.2
218,587 + OHPLBJKB_00200 0.33 +0.6
218,587 + OHPLBJKB_00200 0.33 +1.1
218,587 + OHPLBJKB_00200 0.33 -0.1
218,588 - OHPLBJKB_00200 0.33 +1.2
218,588 - OHPLBJKB_00200 0.33 +0.4
218,588 - OHPLBJKB_00200 0.33 -1.7
218,588 - OHPLBJKB_00200 0.33 +0.4
218,588 - OHPLBJKB_00200 0.33 +2.3
218,588 - OHPLBJKB_00200 0.33 +0.7
218,588 - OHPLBJKB_00200 0.33 -0.2
218,639 + OHPLBJKB_00200 0.37 -0.8
218,648 + OHPLBJKB_00200 0.37 +0.5
218,649 - OHPLBJKB_00200 0.37 -0.5
218,679 + OHPLBJKB_00200 0.40 +0.1
218,679 + OHPLBJKB_00200 0.40 +0.4
218,679 + OHPLBJKB_00200 0.40 +0.4
218,679 + OHPLBJKB_00200 0.40 +0.8
218,679 + OHPLBJKB_00200 0.40 -2.5
218,680 - OHPLBJKB_00200 0.40 -2.0
218,680 - OHPLBJKB_00200 0.40 +0.2
218,789 + OHPLBJKB_00200 0.48 -1.5
218,789 + OHPLBJKB_00200 0.48 -1.1
218,789 + OHPLBJKB_00200 0.48 +0.4
218,790 - OHPLBJKB_00200 0.48 -1.4
218,839 + OHPLBJKB_00200 0.52 -1.3
218,840 - OHPLBJKB_00200 0.52 -0.5
218,840 - OHPLBJKB_00200 0.52 +0.3
218,874 + OHPLBJKB_00200 0.55 +0.3
218,874 + OHPLBJKB_00200 0.55 -0.2
218,874 + OHPLBJKB_00200 0.55 -2.5
218,874 + OHPLBJKB_00200 0.55 -1.0
218,874 + OHPLBJKB_00200 0.55 -0.4
218,874 + OHPLBJKB_00200 0.55 -1.1
218,874 + OHPLBJKB_00200 0.55 -0.9
218,874 + OHPLBJKB_00200 0.55 -0.3
218,874 + OHPLBJKB_00200 0.55 +0.7
218,875 - OHPLBJKB_00200 0.55 -0.3
218,875 - OHPLBJKB_00200 0.55 +0.4
218,875 - OHPLBJKB_00200 0.55 -1.4
218,875 - OHPLBJKB_00200 0.55 +0.4
218,875 - OHPLBJKB_00200 0.55 +0.2
218,875 - OHPLBJKB_00200 0.55 +0.2
218,875 - OHPLBJKB_00200 0.55 -2.3
218,875 - OHPLBJKB_00200 0.55 -1.5
218,875 - OHPLBJKB_00200 0.55 +0.7
218,933 - OHPLBJKB_00200 0.59 +0.0
218,993 + OHPLBJKB_00200 0.64 +0.6
218,993 + OHPLBJKB_00200 0.64 -1.0
218,993 + OHPLBJKB_00200 0.64 +0.8
218,993 + OHPLBJKB_00200 0.64 +0.1
218,993 + OHPLBJKB_00200 0.64 -0.0
218,993 + OHPLBJKB_00200 0.64 -0.8
218,994 - OHPLBJKB_00200 0.64 +0.3
219,060 - OHPLBJKB_00200 0.69 -1.9
219,070 - OHPLBJKB_00200 0.70 -0.4

Or see this region's nucleotide sequence