Strain Fitness in Escherichia fergusonii Becca around EFB2_04619

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,854,212	+		EFB2_04617	0.81	-0.3
4,854,231	+		EFB2_04617	0.82	+0.3
4,854,232	-		EFB2_04617	0.82	+0.3
4,854,232	-		EFB2_04617	0.82	+0.3
4,854,232	-		EFB2_04617	0.82	-0.5
4,854,232	-		EFB2_04617	0.82	+0.7
4,854,233	+		EFB2_04617	0.82	+0.1
4,854,233	+		EFB2_04617	0.82	+1.2
4,854,234	-		EFB2_04617	0.82	+1.1
4,854,234	-		EFB2_04617	0.82	-0.9
4,854,342	-		EFB2_04617	0.88	-1.3
4,854,342	-		EFB2_04617	0.88	+1.1
4,854,362	+		EFB2_04617	0.89	+0.4
4,854,363	-		EFB2_04617	0.89	+1.2
4,854,376	-		EFB2_04617	0.89	-0.4
4,854,376	-		EFB2_04617	0.89	+0.1
4,854,480	+				-3.8
4,854,518	+				+0.1
4,854,518	+				-0.3
4,854,518	+				-3.6
4,854,519	-				+0.3
4,854,555	+				+1.0
4,854,556	-				+0.3
4,854,556	-				-0.3
4,854,556	-				+0.1
4,854,581	+				+0.6
4,854,581	+				-3.1
4,854,581	+				+0.9
4,854,581	+				-0.4
4,854,581	+				-0.1
4,854,581	+				+0.0
4,854,581	+				+0.1
4,854,581	+				+0.2
4,854,581	+				-1.4
4,854,581	+				+1.6
4,854,581	+				-1.2
4,854,581	+				-1.5
4,854,581	+				-2.0
4,854,581	+				-1.6
4,854,581	+				+0.7
4,854,581	+				+0.4
4,854,581	+				-0.1
4,854,581	+				-0.9
4,854,581	+				-0.4
4,854,582	-				+0.5
4,854,582	-				-2.5
4,854,582	-				-0.6
4,854,582	-				-0.1
4,854,582	-				-1.4
4,854,582	-				-1.2
4,854,582	-				-1.5
4,854,582	-				+0.3
4,854,582	-				+0.4
4,854,582	-				-0.9
4,854,582	-				-0.3
4,854,582	-				-0.5
4,854,582	-				+0.6
4,854,582	-				+1.3
4,854,582	-				+0.8
4,854,582	-				-2.1
4,854,582	-				-0.7
4,854,582	-				+1.7
4,854,582	-				+0.3
4,854,582	-				-1.9
4,854,604	-				-2.1
4,854,604	-				+0.9
4,854,615	+				-0.4
4,854,616	-				+1.2
4,854,616	-				-0.0
4,854,616	-				+1.0
4,854,623	+				+1.1
4,854,623	+				-2.6
4,854,642	+		EFB2_04618	0.10	+1.2
4,854,642	+		EFB2_04618	0.10	+0.1
4,854,642	+		EFB2_04618	0.10	-1.3
4,854,642	+		EFB2_04618	0.10	-0.5
4,854,642	+		EFB2_04618	0.10	+0.3
4,854,642	+		EFB2_04618	0.10	-0.0
4,854,642	+		EFB2_04618	0.10	+0.9
4,854,642	+		EFB2_04618	0.10	-1.5
4,854,642	+		EFB2_04618	0.10	-0.4
4,854,642	+		EFB2_04618	0.10	-1.6
4,854,642	+		EFB2_04618	0.10	+0.5
4,854,642	+		EFB2_04618	0.10	+0.0
4,854,642	+		EFB2_04618	0.10	+0.9
4,854,642	+		EFB2_04618	0.10	-0.5
4,854,642	+		EFB2_04618	0.10	-0.4
4,854,642	+		EFB2_04618	0.10	-1.4
4,854,642	+		EFB2_04618	0.10	+0.5
4,854,642	+		EFB2_04618	0.10	-0.6
4,854,642	+		EFB2_04618	0.10	-0.1
4,854,642	+		EFB2_04618	0.10	+1.7
4,854,642	+		EFB2_04618	0.10	+0.8
4,854,643	-		EFB2_04618	0.10	+0.2
4,854,643	-		EFB2_04618	0.10	-1.4
4,854,643	-		EFB2_04618	0.10	-0.2
4,854,643	-		EFB2_04618	0.10	-2.4
4,854,643	-		EFB2_04618	0.10	+0.8
4,854,643	-		EFB2_04618	0.10	+1.5
4,854,643	-		EFB2_04618	0.10	-2.1
4,854,643	-		EFB2_04618	0.10	+1.1
4,854,643	-		EFB2_04618	0.10	+0.4
4,854,643	-		EFB2_04618	0.10	+0.5
4,854,643	-		EFB2_04618	0.10	+0.6
4,854,643	-		EFB2_04618	0.10	+0.4
4,854,643	-		EFB2_04618	0.10	+0.8
4,854,643	-		EFB2_04618	0.10	-0.4
4,854,643	-		EFB2_04618	0.10	+1.8
4,854,643	-		EFB2_04618	0.10	+0.9
4,854,643	-		EFB2_04618	0.10	+0.2
4,854,643	-		EFB2_04618	0.10	-0.0
4,854,643	-		EFB2_04618	0.10	+0.6
4,854,643	-		EFB2_04618	0.10	+1.9
4,854,675	+		EFB2_04618	0.15	-0.4
4,854,675	+		EFB2_04618	0.15	+0.1
4,854,675	+		EFB2_04618	0.15	+0.0
4,854,675	+		EFB2_04618	0.15	-0.3
4,854,675	+		EFB2_04618	0.15	+1.0
4,854,675	+		EFB2_04618	0.15	-1.1
4,854,675	+		EFB2_04618	0.15	-2.5
4,854,675	+		EFB2_04618	0.15	-2.8
4,854,675	+		EFB2_04618	0.15	+0.5
4,854,676	-		EFB2_04618	0.15	+0.0
4,854,676	-		EFB2_04618	0.15	+0.3
4,854,676	-		EFB2_04618	0.15	-0.5
4,854,676	-		EFB2_04618	0.15	-0.2
4,854,676	-		EFB2_04618	0.15	+0.4
4,854,676	-		EFB2_04618	0.15	+0.4
4,854,676	-		EFB2_04618	0.15	+0.8
4,854,676	-		EFB2_04618	0.15	+0.9
4,854,676	-		EFB2_04618	0.15	+1.6
4,854,676	-		EFB2_04618	0.15	+1.1
4,854,676	-		EFB2_04618	0.15	-0.6
4,854,676	-		EFB2_04618	0.15	+2.4
4,854,676	-		EFB2_04618	0.15	+0.8
4,854,679	+		EFB2_04618	0.16	-1.2
4,854,679	+		EFB2_04618	0.16	+0.4
4,854,679	+		EFB2_04618	0.16	-1.4
4,854,679	+		EFB2_04618	0.16	+1.0
4,854,679	+		EFB2_04618	0.16	-0.3
4,854,679	+		EFB2_04618	0.16	+0.5
4,854,679	+		EFB2_04618	0.16	-0.6
4,854,679	+		EFB2_04618	0.16	-1.8
4,854,679	+		EFB2_04618	0.16	+0.6
4,854,679	+		EFB2_04618	0.16	-3.1
4,854,679	+		EFB2_04618	0.16	+0.4
4,854,679	+		EFB2_04618	0.16	+1.1
4,854,679	+		EFB2_04618	0.16	-2.1
4,854,679	+		EFB2_04618	0.16	-2.1
4,854,679	+		EFB2_04618	0.16	-1.9
4,854,679	+		EFB2_04618	0.16	-0.3
4,854,680	-		EFB2_04618	0.16	-0.0
4,854,680	-		EFB2_04618	0.16	-0.5
4,854,680	-		EFB2_04618	0.16	-0.6
4,854,680	-		EFB2_04618	0.16	+1.1
4,854,680	-		EFB2_04618	0.16	-0.0
4,854,680	-		EFB2_04618	0.16	-0.4
4,854,680	-		EFB2_04618	0.16	+1.9
4,854,680	-		EFB2_04618	0.16	+1.4
4,854,680	-		EFB2_04618	0.16	+0.1
4,854,680	-		EFB2_04618	0.16	-0.5
4,854,680	-		EFB2_04618	0.16	-0.3
4,854,680	-		EFB2_04618	0.16	-3.1
4,854,680	-		EFB2_04618	0.16	+0.5
4,854,680	-		EFB2_04618	0.16	+0.5
4,854,680	-		EFB2_04618	0.16	+1.1
4,854,680	-		EFB2_04618	0.16	-3.0
4,854,680	-		EFB2_04618	0.16	-0.1
4,854,680	-		EFB2_04618	0.16	+0.3
4,854,680	-		EFB2_04618	0.16	-0.3
4,854,690	+		EFB2_04618	0.18	-2.5
4,854,690	+		EFB2_04618	0.18	+0.3
4,854,690	+		EFB2_04618	0.18	-0.6
4,854,690	+		EFB2_04618	0.18	-0.9
4,854,690	+		EFB2_04618	0.18	-0.7
4,854,690	+		EFB2_04618	0.18	+0.4
4,854,690	+		EFB2_04618	0.18	+0.4
4,854,691	-		EFB2_04618	0.18	-0.8
4,854,691	-		EFB2_04618	0.18	-0.5
4,854,691	-		EFB2_04618	0.18	-0.4
4,854,691	-		EFB2_04618	0.18	+0.6
4,854,691	-		EFB2_04618	0.18	+0.4
4,854,691	-		EFB2_04618	0.18	+0.3
4,854,720	+		EFB2_04618	0.22	-0.6
4,854,720	+		EFB2_04618	0.22	-0.6
4,854,720	+		EFB2_04618	0.22	+1.0
4,854,720	+		EFB2_04618	0.22	+0.8
4,854,720	+		EFB2_04618	0.22	+1.2
4,854,720	+		EFB2_04618	0.22	+0.8
4,854,720	+		EFB2_04618	0.22	+1.1
4,854,720	+		EFB2_04618	0.22	-0.1
4,854,720	+		EFB2_04618	0.22	-0.3
4,854,721	-		EFB2_04618	0.22	+0.0
4,854,721	-		EFB2_04618	0.22	+0.3
4,854,721	-		EFB2_04618	0.22	+0.7
4,854,721	-		EFB2_04618	0.22	+1.6
4,854,721	-		EFB2_04618	0.22	+1.1
4,854,721	-		EFB2_04618	0.22	-0.2
4,854,721	-		EFB2_04618	0.22	-2.0
4,854,721	-		EFB2_04618	0.22	-0.5
4,854,721	-		EFB2_04618	0.22	+1.1
4,854,721	-		EFB2_04618	0.22	-2.4
4,854,721	-		EFB2_04618	0.22	-2.0
4,854,721	-		EFB2_04618	0.22	-1.2
4,854,721	-		EFB2_04618	0.22	+0.9
4,854,761	+		EFB2_04618	0.29	-1.5
4,854,761	+		EFB2_04618	0.29	-0.6
4,854,762	-		EFB2_04618	0.29	+0.3
4,854,762	-		EFB2_04618	0.29	-0.6
4,854,764	-		EFB2_04618	0.29	+0.0
4,854,778	+		EFB2_04618	0.31	-0.7
4,854,788	+		EFB2_04618	0.33	+0.8
4,854,789	-		EFB2_04618	0.33	+1.2
4,854,789	-		EFB2_04618	0.33	-0.1
4,854,789	-		EFB2_04618	0.33	+0.3
4,854,805	+		EFB2_04618	0.36	-0.2
4,854,805	+		EFB2_04618	0.36	-1.6
4,854,805	+		EFB2_04618	0.36	+0.3
4,854,805	+		EFB2_04618	0.36	-0.1
4,854,805	+		EFB2_04618	0.36	+0.3
4,854,806	-		EFB2_04618	0.36	-0.4
4,854,806	-		EFB2_04618	0.36	+0.6
4,854,818	+		EFB2_04618	0.38	-0.1
4,854,818	+		EFB2_04618	0.38	-0.7
4,854,818	+		EFB2_04618	0.38	-3.0
4,854,818	+		EFB2_04618	0.38	-1.6
4,854,819	-		EFB2_04618	0.38	-1.9
4,854,819	-		EFB2_04618	0.38	-1.5
4,854,819	-		EFB2_04618	0.38	+2.5
4,854,819	-		EFB2_04618	0.38	+0.9
4,854,950	+		EFB2_04618	0.58	+0.3
4,854,950	+		EFB2_04618	0.58	+0.4
4,854,950	+		EFB2_04618	0.58	-0.4
4,854,950	+		EFB2_04618	0.58	-1.1
4,854,950	+		EFB2_04618	0.58	-0.6
4,854,950	+		EFB2_04618	0.58	-1.9
4,854,950	+		EFB2_04618	0.58	+0.6
4,854,950	+		EFB2_04618	0.58	+0.0
4,854,950	+		EFB2_04618	0.58	-2.5
4,854,950	+		EFB2_04618	0.58	+0.4
4,854,950	+		EFB2_04618	0.58	+0.3
4,854,950	+		EFB2_04618	0.58	-1.3
4,854,950	+		EFB2_04618	0.58	+0.2
4,854,950	+		EFB2_04618	0.58	-0.4
4,854,950	+		EFB2_04618	0.58	-0.2
4,854,950	+		EFB2_04618	0.58	+1.5
4,854,950	+		EFB2_04618	0.58	+0.6
4,854,950	+		EFB2_04618	0.58	+0.0
4,854,950	+		EFB2_04618	0.58	-0.4
4,854,950	+		EFB2_04618	0.58	-0.5
4,854,950	+		EFB2_04618	0.58	-1.3
4,854,951	-		EFB2_04618	0.59	-2.1
4,854,951	-		EFB2_04618	0.59	-0.3
4,854,951	-		EFB2_04618	0.59	+4.4
4,854,951	-		EFB2_04618	0.59	-0.1
4,854,951	-		EFB2_04618	0.59	+0.5
4,854,951	-		EFB2_04618	0.59	+0.5
4,854,951	-		EFB2_04618	0.59	-0.8
4,854,951	-		EFB2_04618	0.59	-0.4
4,854,951	-		EFB2_04618	0.59	-3.0
4,854,951	-		EFB2_04618	0.59	-0.6
4,854,951	-		EFB2_04618	0.59	+1.2
4,854,951	-		EFB2_04618	0.59	+1.4
4,854,951	-		EFB2_04618	0.59	-1.6
4,854,951	-		EFB2_04618	0.59	+0.9
4,854,951	-		EFB2_04618	0.59	-1.4
4,854,951	-		EFB2_04618	0.59	-0.1
4,854,951	-		EFB2_04618	0.59	+0.5
4,854,951	-		EFB2_04618	0.59	-1.8
4,854,951	-		EFB2_04618	0.59	+0.7
4,854,951	-		EFB2_04618	0.59	-2.5
4,854,951	-		EFB2_04618	0.59	-0.1
4,854,951	-		EFB2_04618	0.59	+1.6
4,854,951	-		EFB2_04618	0.59	+1.9
4,854,951	-		EFB2_04618	0.59	+1.5
4,854,951	-		EFB2_04618	0.59	+0.3
4,854,951	-		EFB2_04618	0.59	-1.0
4,854,952	+		EFB2_04618	0.59	+0.2
4,854,952	+		EFB2_04618	0.59	-0.1
4,854,952	+		EFB2_04618	0.59	+0.6
4,854,953	-		EFB2_04618	0.59	+1.3
4,854,953	-		EFB2_04618	0.59	-0.7
4,854,953	-		EFB2_04618	0.59	-2.4
4,854,953	-		EFB2_04618	0.59	-0.9
4,854,953	-		EFB2_04618	0.59	-0.5
4,855,076	-		EFB2_04618	0.78	+0.1
4,855,104	+		EFB2_04618	0.83	+0.7
4,855,105	-		EFB2_04618	0.83	+1.1
4,855,123	+		EFB2_04618	0.86	+0.5
4,855,144	+		EFB2_04618	0.89	+0.1
4,855,144	+		EFB2_04618	0.89	-0.4
4,855,145	-		EFB2_04618	0.89	+0.4
4,855,223	+				-0.1
4,855,223	+				+0.3
4,855,224	-				+0.7
4,855,224	-				+0.8
4,855,230	+				+1.8
4,855,230	+				+1.2
4,855,232	+				+0.2
4,855,233	-				-1.6
4,855,233	-				+1.3
4,855,304	+		EFB2_04619	0.13	-1.0
4,855,325	+		EFB2_04619	0.16	-1.1
4,855,325	+		EFB2_04619	0.16	-0.2
4,855,325	+		EFB2_04619	0.16	-0.3
4,855,326	-		EFB2_04619	0.16	+0.9
4,855,339	+		EFB2_04619	0.18	-1.7
4,855,340	-		EFB2_04619	0.18	+0.4
4,855,340	-		EFB2_04619	0.18	+0.3
4,855,341	+		EFB2_04619	0.18	+0.6
4,855,341	+		EFB2_04619	0.18	-1.4
4,855,341	+		EFB2_04619	0.18	-0.1
4,855,342	-		EFB2_04619	0.18	+0.8
4,855,342	-		EFB2_04619	0.18	-2.6
4,855,342	-		EFB2_04619	0.18	-0.6
4,855,342	-		EFB2_04619	0.18	+0.3
4,855,342	-		EFB2_04619	0.18	+1.6
4,855,342	-		EFB2_04619	0.18	-0.6
4,855,342	-		EFB2_04619	0.18	+0.4
4,855,373	-		EFB2_04619	0.22	+1.0
4,855,373	-		EFB2_04619	0.22	+0.6
4,855,399	+		EFB2_04619	0.26	+0.5
4,855,399	+		EFB2_04619	0.26	-0.9
4,855,399	+		EFB2_04619	0.26	-1.5
4,855,399	+		EFB2_04619	0.26	+0.4
4,855,399	+		EFB2_04619	0.26	-0.2
4,855,399	+		EFB2_04619	0.26	+0.9
4,855,400	-		EFB2_04619	0.26	-1.6
4,855,400	-		EFB2_04619	0.26	+0.1
4,855,400	-		EFB2_04619	0.26	+1.0
4,855,400	-		EFB2_04619	0.26	+1.0
4,855,400	-		EFB2_04619	0.26	+0.6
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