Strain Fitness in Escherichia fergusonii Becca around EFB2_04042

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,250,626	+		EFB2_04041	0.79	-1.2
4,250,626	+		EFB2_04041	0.79	-0.4
4,250,647	+		EFB2_04041	0.80	+2.6
4,250,647	+		EFB2_04041	0.80	-2.4
4,250,647	+		EFB2_04041	0.80	+0.3
4,250,648	-		EFB2_04041	0.80	+0.5
4,250,648	-		EFB2_04041	0.80	-0.1
4,250,656	+		EFB2_04041	0.80	+2.1
4,250,656	+		EFB2_04041	0.80	-0.2
4,250,657	-		EFB2_04041	0.80	-0.6
4,250,657	-		EFB2_04041	0.80	+0.4
4,250,667	+		EFB2_04041	0.81	+0.2
4,250,667	+		EFB2_04041	0.81	-2.6
4,250,667	+		EFB2_04041	0.81	+0.1
4,250,668	-		EFB2_04041	0.81	+0.3
4,250,668	-		EFB2_04041	0.81	-0.7
4,250,668	-		EFB2_04041	0.81	-0.2
4,250,710	+		EFB2_04041	0.82	-3.4
4,250,710	+		EFB2_04041	0.82	-0.4
4,250,732	+		EFB2_04041	0.83	+0.9
4,250,732	+		EFB2_04041	0.83	+0.6
4,250,733	-		EFB2_04041	0.83	-1.7
4,250,733	-		EFB2_04041	0.83	+0.2
4,250,733	-		EFB2_04041	0.83	+0.1
4,250,733	-		EFB2_04041	0.83	-0.1
4,250,733	-		EFB2_04041	0.83	+1.6
4,250,733	-		EFB2_04041	0.83	-1.6
4,250,733	-		EFB2_04041	0.83	-2.3
4,250,747	-		EFB2_04041	0.84	-1.0
4,250,843	+		EFB2_04041	0.88	+0.2
4,250,844	-		EFB2_04041	0.88	+0.0
4,250,844	-		EFB2_04041	0.88	-2.0
4,250,844	-		EFB2_04041	0.88	+0.9
4,250,844	-		EFB2_04041	0.88	-2.1
4,250,939	-				-0.9
4,250,939	-				+1.4
4,250,956	+				+1.1
4,250,956	+				-0.4
4,250,957	-				-2.5
4,251,121	+				-0.0
4,251,121	+				-0.1
4,251,121	+				-1.2
4,251,122	-				-0.1
4,251,122	-				-2.3
4,251,122	-				+0.1
4,251,122	-				-1.0
4,251,152	+				+0.6
4,251,152	+				-1.3
4,251,152	+				-3.4
4,251,152	+				-4.0
4,251,152	+				+1.6
4,251,152	+				+0.1
4,251,152	+				-2.4
4,251,152	+				+1.3
4,251,152	+				-0.6
4,251,152	+				+0.0
4,251,152	+				-1.1
4,251,153	-				-1.6
4,251,153	-				-1.4
4,251,153	-				+1.2
4,251,153	-				-3.1
4,251,153	-				-0.5
4,251,153	-				-0.3
4,251,153	-				-0.3
4,251,153	-				-1.1
4,251,153	-				+0.6
4,251,160	+				+0.2
4,251,161	-				-0.2
4,251,220	+				-0.4
4,251,221	-				-0.3
4,251,240	+				-0.2
4,251,250	-				+0.4
4,251,267	+				-0.1
4,251,279	+				-1.0
4,251,280	-				-0.1
4,251,302	+				-0.2
4,251,302	+				-1.4
4,251,303	-				+3.6
4,251,303	-				-1.3
4,251,303	-				-0.1
4,251,303	-				+0.6
4,251,309	+				-1.0
4,251,309	+				+0.1
4,251,316	+				+0.3
4,251,331	+				+2.1
4,251,332	-				+0.6
4,251,332	-				-0.2
4,251,332	-				-0.6
4,251,337	+				-1.3
4,251,337	+				-0.4
4,251,337	+				+0.9
4,251,337	+				-0.4
4,251,338	-				+1.0
4,251,338	-				-0.9
4,251,338	-				-1.0
4,251,338	-				+1.5
4,251,339	+				-1.6
4,251,339	+				+0.5
4,251,340	-				+1.3
4,251,351	+				-1.0
4,251,351	+				-1.5
4,251,352	-				+0.0
4,251,352	-				+0.8
4,251,352	-				-0.5
4,251,355	+				-2.5
4,251,356	-				+1.4
4,251,356	-				-2.1
4,251,363	+				+2.1
4,251,363	+				-0.6
4,251,363	+				+2.1
4,251,363	+				+3.6
4,251,363	+				+1.4
4,251,364	-				+0.2
4,251,364	-				+1.6
4,251,364	-				-2.1
4,251,372	-				+0.3
4,251,384	+				+0.8
4,251,384	+				+0.7
4,251,384	+				-1.9
4,251,385	-				-0.7
4,251,385	-				+1.2
4,251,385	-				-2.1
4,251,416	+				+1.7
4,251,417	-				+0.4
4,251,435	-				-0.4
4,251,451	+				+0.2
4,251,451	+				+1.7
4,251,451	+				+1.3
4,251,451	+				-0.7
4,251,451	+				-0.6
4,251,451	+				-0.9
4,251,451	+				-0.1
4,251,451	+				-1.2
4,251,451	+				-1.2
4,251,451	+				+0.1
4,251,451	+				-0.4
4,251,451	+				+2.6
4,251,451	+				+0.1
4,251,451	+				+1.0
4,251,451	+				+0.5
4,251,451	+				-1.2
4,251,451	+				-3.3
4,251,451	+				+1.0
4,251,451	+				-0.2
4,251,451	+				+1.8
4,251,452	-				-0.6
4,251,452	-				+0.7
4,251,452	-				-1.9
4,251,452	-				+0.8
4,251,452	-				-2.5
4,251,452	-				+2.3
4,251,452	-				+0.5
4,251,452	-				+0.5
4,251,452	-				+0.7
4,251,452	-				+1.5
4,251,452	-				+0.1
4,251,452	-				-1.8
4,251,452	-				-1.2
4,251,452	-				-0.1
4,251,452	-				+0.5
4,251,452	-				-1.3
4,251,452	-				-1.4
4,251,452	-				-0.5
4,251,452	-				-2.8
4,251,452	-				-0.4
4,251,452	-				-0.3
4,251,452	-				+0.0
4,251,452	-				+0.2
4,251,452	-				+0.8
4,251,452	-				+2.4
4,251,452	-				+0.4
4,251,452	-				+0.9
4,251,452	-				+1.5
4,251,452	-				-3.2
4,251,491	+				+0.8
4,251,491	+				-1.9
4,251,491	+				-0.8
4,251,491	+				-0.2
4,251,491	+				+0.0
4,251,491	+				-0.2
4,251,492	-				+0.4
4,251,492	-				-0.3
4,251,492	-				-0.6
4,251,492	-				-1.5
4,251,492	-				-1.6
4,251,492	-				-1.3
4,251,494	+				+2.1
4,251,494	+				-1.3
4,251,494	+				+0.3
4,251,494	+				+0.2
4,251,494	+				+0.7
4,251,494	+				+0.8
4,251,495	-				+0.2
4,251,507	-				-0.8
4,251,529	-				-3.0
4,251,529	-				+0.1
4,251,571	+				-0.6
4,251,571	+				-0.4
4,251,571	+				+0.3
4,251,571	+				+2.1
4,251,572	-				-1.0
4,251,572	-				-0.0
4,251,572	-				-1.0
4,251,572	-				+0.7
4,251,592	+		EFB2_04042	0.13	+2.0
4,251,593	-		EFB2_04042	0.13	+0.3
4,251,593	-		EFB2_04042	0.13	-0.1
4,251,610	+		EFB2_04042	0.15	+0.6
4,251,610	+		EFB2_04042	0.15	+0.7
4,251,610	+		EFB2_04042	0.15	-0.5
4,251,610	+		EFB2_04042	0.15	+1.0
4,251,610	+		EFB2_04042	0.15	+1.0
4,251,611	-		EFB2_04042	0.15	-0.3
4,251,611	-		EFB2_04042	0.15	-0.6
4,251,611	-		EFB2_04042	0.15	+0.4
4,251,611	-		EFB2_04042	0.15	-1.2
4,251,611	-		EFB2_04042	0.15	+1.1
4,251,611	-		EFB2_04042	0.15	-1.6
4,251,611	-		EFB2_04042	0.15	+0.3
4,251,661	+		EFB2_04042	0.23	-0.9
4,251,715	+		EFB2_04042	0.31	+2.2
4,251,715	+		EFB2_04042	0.31	+0.0
4,251,715	+		EFB2_04042	0.31	-1.6
4,251,715	+		EFB2_04042	0.31	-3.1
4,251,715	+		EFB2_04042	0.31	+1.0
4,251,715	+		EFB2_04042	0.31	-0.7
4,251,716	-		EFB2_04042	0.31	+0.2
4,251,716	-		EFB2_04042	0.31	+0.5
4,251,716	-		EFB2_04042	0.31	-1.6
4,251,716	-		EFB2_04042	0.31	-0.0
4,251,716	-		EFB2_04042	0.31	-0.1
4,251,716	-		EFB2_04042	0.31	+0.1
4,251,718	+		EFB2_04042	0.31	+1.3
4,251,718	+		EFB2_04042	0.31	-0.2
4,251,718	+		EFB2_04042	0.31	+0.4
4,251,718	+		EFB2_04042	0.31	-0.4
4,251,718	+		EFB2_04042	0.31	-0.4
4,251,718	+		EFB2_04042	0.31	+0.2
4,251,718	+		EFB2_04042	0.31	+1.1
4,251,719	-		EFB2_04042	0.31	+1.2
4,251,719	-		EFB2_04042	0.31	-1.2
4,251,727	+		EFB2_04042	0.32	-0.6
4,251,727	+		EFB2_04042	0.32	-0.2
4,251,734	+		EFB2_04042	0.33	-0.7
4,251,735	-		EFB2_04042	0.33	-3.5
4,251,740	+		EFB2_04042	0.34	-1.1
4,251,740	+		EFB2_04042	0.34	+0.7
4,251,740	+		EFB2_04042	0.34	-0.4
4,251,740	+		EFB2_04042	0.34	+2.1
4,251,740	+		EFB2_04042	0.34	+0.6
4,251,740	+		EFB2_04042	0.34	-0.3
4,251,741	-		EFB2_04042	0.34	-1.4
4,251,741	-		EFB2_04042	0.34	+0.6
4,251,741	-		EFB2_04042	0.34	-0.6
4,251,741	-		EFB2_04042	0.34	+0.7
4,251,741	-		EFB2_04042	0.34	+1.0
4,251,741	-		EFB2_04042	0.34	-3.2
4,251,741	-		EFB2_04042	0.34	+0.6
4,251,741	-		EFB2_04042	0.34	-1.4
4,251,741	-		EFB2_04042	0.34	+0.5
4,251,741	-		EFB2_04042	0.34	+0.8
4,251,741	-		EFB2_04042	0.34	-0.4
4,251,801	+		EFB2_04042	0.43	-2.3
4,251,801	+		EFB2_04042	0.43	-0.2
4,251,802	-		EFB2_04042	0.43	-1.4
4,251,802	-		EFB2_04042	0.43	+1.7
4,251,820	+		EFB2_04042	0.46	-2.9
4,251,821	-		EFB2_04042	0.46	+0.5
4,251,899	-		EFB2_04042	0.57	-1.7
4,251,917	-		EFB2_04042	0.60	-2.7
4,251,924	+		EFB2_04042	0.61	-2.9
4,251,929	+		EFB2_04042	0.62	-1.0
4,251,929	+		EFB2_04042	0.62	-1.6
4,251,929	+		EFB2_04042	0.62	-1.3
4,251,929	+		EFB2_04042	0.62	-1.6
4,251,930	-		EFB2_04042	0.62	-3.3
4,251,930	-		EFB2_04042	0.62	+1.5
4,251,930	-		EFB2_04042	0.62	-0.2
4,251,930	-		EFB2_04042	0.62	-2.5
4,251,932	+		EFB2_04042	0.62	-2.9
4,251,932	+		EFB2_04042	0.62	+0.2
4,251,932	+		EFB2_04042	0.62	-3.2
4,251,932	+		EFB2_04042	0.62	-0.1
4,251,932	+		EFB2_04042	0.62	-0.3
4,251,932	+		EFB2_04042	0.62	-2.7
4,251,932	+		EFB2_04042	0.62	-0.7
4,251,932	+		EFB2_04042	0.62	-0.7
4,251,932	+		EFB2_04042	0.62	+2.1
4,251,933	-		EFB2_04042	0.62	-1.9
4,251,933	-		EFB2_04042	0.62	-0.3
4,251,933	-		EFB2_04042	0.62	-0.5
4,251,933	-		EFB2_04042	0.62	-0.2
4,251,933	-		EFB2_04042	0.62	-1.6
4,251,933	-		EFB2_04042	0.62	+0.2
4,251,933	-		EFB2_04042	0.62	-0.3
4,251,933	-		EFB2_04042	0.62	+0.3
4,251,933	-		EFB2_04042	0.62	-0.7
4,251,938	+		EFB2_04042	0.63	-1.1
4,251,939	-		EFB2_04042	0.63	+0.1
4,251,939	-		EFB2_04042	0.63	-1.3
4,251,939	-		EFB2_04042	0.63	-0.7
4,251,939	-		EFB2_04042	0.63	+0.3
4,251,939	-		EFB2_04042	0.63	-0.7
4,251,939	-		EFB2_04042	0.63	-2.1
4,251,939	-		EFB2_04042	0.63	+0.3
4,252,001	-		EFB2_04042	0.72	-2.3
4,252,001	-		EFB2_04042	0.72	-1.3
4,252,001	-		EFB2_04042	0.72	+0.0
4,252,020	+		EFB2_04042	0.75	+0.8
4,252,024	-		EFB2_04042	0.76	+1.3
4,252,029	+		EFB2_04042	0.76	-1.4
4,252,032	+		EFB2_04042	0.77	+1.7
4,252,086	+		EFB2_04042	0.85	-1.0
4,252,086	+		EFB2_04042	0.85	-0.6
4,252,087	-		EFB2_04042	0.85	-0.3
4,252,087	-		EFB2_04042	0.85	+1.2
4,252,146	+				+0.3
4,252,177	-				-0.1
4,252,177	-				+0.8
4,252,184	-				-0.1
4,252,185	+				+0.4
4,252,185	+				-3.8
4,252,185	+				-0.2
4,252,185	+				+0.8
4,252,185	+				+0.7
4,252,185	+				-2.6
4,252,185	+				-2.2
4,252,185	+				-2.5
4,252,185	+				+1.2
4,252,185	+				+0.4
4,252,185	+				+1.6
4,252,185	+				-2.3
4,252,185	+				-2.1
4,252,186	-				-0.6
4,252,186	-				+0.5
4,252,186	-				-0.4
4,252,186	-				-0.2
4,252,186	-				-0.2
4,252,186	-				+0.2
4,252,186	-				-1.0
4,252,186	-				-2.6
4,252,186	-				+0.7
4,252,186	-				-1.2
4,252,186	-				+0.1
4,252,186	-				+0.7
4,252,191	+				-0.7
4,252,191	+				-1.6
4,252,192	-				+0.6
4,252,192	-				+0.7
4,252,192	-				+0.7
4,252,192	-				+0.6
4,252,215	-				-0.1
4,252,244	+				+0.1
4,252,278	-				+2.1
4,252,278	-				-0.1
4,252,302	+				-0.3
4,252,302	+				+0.8
4,252,302	+				+1.4
4,252,303	-				-0.4
4,252,303	-				+0.0
4,252,303	-				-2.0
4,252,303	-				-0.9
4,252,303	-				+0.0
4,252,318	-				+0.0
4,252,322	+				-0.1
4,252,323	-				-0.2
4,252,323	-				+0.7
4,252,335	+				+0.6
4,252,335	+				+1.9
4,252,335	+				-1.4
4,252,339	-				+1.6
4,252,367	+				+1.4
4,252,367	+				+1.4
4,252,368	-				+1.2
4,252,368	-				+0.5
4,252,368	-				-1.2
4,252,432	+				-0.6
4,252,432	+				-0.0
4,252,435	+				+0.2
4,252,435	+				-0.3
4,252,435	+				+1.2
4,252,435	+				+0.2
4,252,435	+				-0.7
4,252,435	+				+0.2
4,252,436	-				+2.0
4,252,436	-				-0.4
4,252,436	-				+0.8
4,252,436	-				+0.4
4,252,441	+				+0.7
4,252,441	+				+0.1
4,252,442	-				-0.8
4,252,452	+				-0.4
4,252,453	-				+2.0
4,252,453	-				-0.2
4,252,453	-				+1.9
4,252,469	+				+1.0
4,252,485	-				-0.2
4,252,491	+				+1.0
4,252,491	+				+0.3
4,252,491	+				-1.6
4,252,491	+				-1.0
4,252,495	+				+0.2
4,252,495	+				-1.1
4,252,495	+				-0.2
4,252,496	-				+0.9
4,252,496	-				+0.4
4,252,525	+				-0.9
4,252,525	+				+1.7
4,252,525	+				+2.5
4,252,525	+				-1.7
4,252,526	-				-2.3
4,252,540	+				-0.1
4,252,540	+				+0.0
4,252,540	+				+0.2
4,252,540	+				+0.4
4,252,540	+				-0.1
4,252,540	+				-0.2
4,252,540	+				+1.6
4,252,540	+				+2.4
4,252,540	+				+0.3
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