Strain Fitness in Escherichia fergusonii Becca around EFB2_03779

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,960,833	+		EFB2_03778	0.37	+0.2
3,960,833	+		EFB2_03778	0.37	-2.3
3,960,833	+		EFB2_03778	0.37	+0.8
3,960,834	-		EFB2_03778	0.37	-2.8
3,960,834	-		EFB2_03778	0.37	-0.8
3,960,891	-		EFB2_03778	0.42	-0.1
3,960,891	-		EFB2_03778	0.42	-4.6
3,960,891	-		EFB2_03778	0.42	-1.6
3,960,955	+		EFB2_03778	0.48	-3.5
3,960,955	+		EFB2_03778	0.48	-1.9
3,960,956	-		EFB2_03778	0.48	-2.2
3,960,956	-		EFB2_03778	0.48	-0.4
3,960,956	-		EFB2_03778	0.48	-0.4
3,960,956	-		EFB2_03778	0.48	+1.9
3,960,965	+		EFB2_03778	0.49	-0.4
3,960,965	+		EFB2_03778	0.49	-2.8
3,960,965	+		EFB2_03778	0.49	-2.5
3,960,966	-		EFB2_03778	0.49	-1.3
3,960,966	-		EFB2_03778	0.49	-2.4
3,960,966	-		EFB2_03778	0.49	-0.4
3,960,966	-		EFB2_03778	0.49	-1.1
3,961,004	+		EFB2_03778	0.52	-2.3
3,961,005	-		EFB2_03778	0.52	-3.5
3,961,006	+		EFB2_03778	0.53	-2.7
3,961,006	+		EFB2_03778	0.53	-1.9
3,961,006	+		EFB2_03778	0.53	-1.9
3,961,006	+		EFB2_03778	0.53	-4.1
3,961,006	+		EFB2_03778	0.53	-1.2
3,961,006	+		EFB2_03778	0.53	-1.2
3,961,006	+		EFB2_03778	0.53	-0.9
3,961,006	+		EFB2_03778	0.53	-3.9
3,961,006	+		EFB2_03778	0.53	-0.2
3,961,006	+		EFB2_03778	0.53	-2.6
3,961,006	+		EFB2_03778	0.53	-2.2
3,961,007	-		EFB2_03778	0.53	-2.3
3,961,007	-		EFB2_03778	0.53	-2.1
3,961,007	-		EFB2_03778	0.53	+1.3
3,961,007	-		EFB2_03778	0.53	-1.4
3,961,007	-		EFB2_03778	0.53	-0.4
3,961,007	-		EFB2_03778	0.53	-1.9
3,961,007	-		EFB2_03778	0.53	-0.9
3,961,007	-		EFB2_03778	0.53	-0.3
3,961,007	-		EFB2_03778	0.53	-0.3
3,961,007	-		EFB2_03778	0.53	-3.0
3,961,007	-		EFB2_03778	0.53	-3.7
3,961,040	+		EFB2_03778	0.56	+0.3
3,961,085	+		EFB2_03778	0.60	-2.2
3,961,097	+		EFB2_03778	0.61	-0.2
3,961,097	+		EFB2_03778	0.61	-3.4
3,961,097	+		EFB2_03778	0.61	-0.6
3,961,097	+		EFB2_03778	0.61	-2.7
3,961,097	+		EFB2_03778	0.61	-1.2
3,961,097	+		EFB2_03778	0.61	-1.8
3,961,097	+		EFB2_03778	0.61	-0.4
3,961,098	-		EFB2_03778	0.61	-1.5
3,961,098	-		EFB2_03778	0.61	-1.9
3,961,098	-		EFB2_03778	0.61	-0.9
3,961,110	-		EFB2_03778	0.62	-3.8
3,961,131	-		EFB2_03778	0.64	-4.5
3,961,131	-		EFB2_03778	0.64	-1.2
3,961,131	-		EFB2_03778	0.64	-2.9
3,961,131	-		EFB2_03778	0.64	-2.5
3,961,131	-		EFB2_03778	0.64	-0.7
3,961,134	+		EFB2_03778	0.64	-2.4
3,961,134	+		EFB2_03778	0.64	+0.5
3,961,145	+		EFB2_03778	0.65	-1.8
3,961,145	+		EFB2_03778	0.65	-4.1
3,961,145	+		EFB2_03778	0.65	-1.5
3,961,146	-		EFB2_03778	0.65	-2.6
3,961,208	+		EFB2_03778	0.71	-0.4
3,961,209	-		EFB2_03778	0.71	+0.6
3,961,249	+		EFB2_03778	0.75	+0.2
3,961,249	+		EFB2_03778	0.75	-0.4
3,961,250	-		EFB2_03778	0.75	-4.3
3,961,325	+		EFB2_03778	0.81	-3.3
3,961,326	-		EFB2_03778	0.82	-2.2
3,961,391	+		EFB2_03778	0.87	-0.1
3,961,391	+		EFB2_03778	0.87	-2.7
3,961,391	+		EFB2_03778	0.87	-1.2
3,961,391	+		EFB2_03778	0.87	-1.0
3,961,391	+		EFB2_03778	0.87	-1.7
3,961,391	+		EFB2_03778	0.87	-0.4
3,961,392	-		EFB2_03778	0.88	-2.0
3,961,392	-		EFB2_03778	0.88	-1.3
3,961,416	+		EFB2_03778	0.90	+0.5
3,961,416	+		EFB2_03778	0.90	-2.4
3,961,416	+		EFB2_03778	0.90	-2.4
3,961,416	+		EFB2_03778	0.90	-0.3
3,961,416	+		EFB2_03778	0.90	+0.1
3,961,416	+		EFB2_03778	0.90	-0.7
3,961,417	-		EFB2_03778	0.90	-2.0
3,961,417	-		EFB2_03778	0.90	-0.2
3,961,417	-		EFB2_03778	0.90	-1.8
3,961,417	-		EFB2_03778	0.90	-1.0
3,961,417	-		EFB2_03778	0.90	+3.0
3,961,417	-		EFB2_03778	0.90	-4.2
3,961,417	-		EFB2_03778	0.90	-4.0
3,961,417	-		EFB2_03778	0.90	-1.2
3,961,417	-		EFB2_03778	0.90	-0.2
3,961,417	-		EFB2_03778	0.90	-1.7
3,961,417	-		EFB2_03778	0.90	-2.2
3,961,417	-		EFB2_03778	0.90	-2.6
3,961,417	-		EFB2_03778	0.90	-1.3
3,961,482	+				-2.9
3,961,482	+				-4.1
3,961,482	+				-0.5
3,961,483	-				+0.6
3,961,580	-				-0.0
3,961,580	-				+0.3
3,961,580	-				-0.1
3,961,666	+				+0.2
3,961,667	-				+0.8
3,961,667	-				+1.1
3,961,674	+				+1.1
3,961,674	+				-0.1
3,961,675	-				-1.9
3,961,686	-				-0.9
3,961,704	-				-3.5
3,961,704	-				-0.7
3,961,704	-				+0.6
3,961,713	-				+1.6
3,961,716	-				-0.5
3,961,716	-				-0.3
3,961,722	+				+0.1
3,961,723	-				+1.5
3,961,725	+				-0.9
3,961,726	-				-1.6
3,961,727	+				+1.1
3,961,728	-				-0.5
3,961,728	-				+2.1
3,961,797	+				-0.2
3,961,798	-				-1.0
3,961,892	+				+2.1
3,961,892	+				-0.2
3,961,893	-				+1.5
3,961,920	+				+1.0
3,961,932	-		EFB2_03779	0.11	+1.7
3,961,944	+		EFB2_03779	0.12	-1.8
3,961,944	+		EFB2_03779	0.12	+0.7
3,961,945	-		EFB2_03779	0.12	+0.5
3,961,945	-		EFB2_03779	0.12	-0.7
3,961,946	+		EFB2_03779	0.12	-3.0
3,961,964	+		EFB2_03779	0.14	-0.7
3,961,984	-		EFB2_03779	0.16	+0.4
3,962,037	+		EFB2_03779	0.21	+2.1
3,962,084	+		EFB2_03779	0.25	+0.2
3,962,129	+		EFB2_03779	0.29	-0.4
3,962,129	+		EFB2_03779	0.29	+0.7
3,962,151	+		EFB2_03779	0.32	-0.4
3,962,151	+		EFB2_03779	0.32	-0.3
3,962,160	-		EFB2_03779	0.32	-1.8
3,962,175	+		EFB2_03779	0.34	-0.3
3,962,175	+		EFB2_03779	0.34	-0.2
3,962,175	+		EFB2_03779	0.34	+0.1
3,962,175	+		EFB2_03779	0.34	+2.3
3,962,175	+		EFB2_03779	0.34	-2.1
3,962,175	+		EFB2_03779	0.34	+1.0
3,962,175	+		EFB2_03779	0.34	-0.7
3,962,175	+		EFB2_03779	0.34	+0.9
3,962,176	-		EFB2_03779	0.34	-0.4
3,962,176	-		EFB2_03779	0.34	+0.1
3,962,176	-		EFB2_03779	0.34	+1.8
3,962,176	-		EFB2_03779	0.34	+0.8
3,962,176	-		EFB2_03779	0.34	+1.8
3,962,176	-		EFB2_03779	0.34	-0.4
3,962,176	-		EFB2_03779	0.34	+0.2
3,962,176	-		EFB2_03779	0.34	-1.1
3,962,196	+		EFB2_03779	0.36	-0.4
3,962,198	+		EFB2_03779	0.36	+1.4
3,962,198	+		EFB2_03779	0.36	-0.0
3,962,198	+		EFB2_03779	0.36	-0.6
3,962,199	-		EFB2_03779	0.36	-0.9
3,962,199	-		EFB2_03779	0.36	-1.7
3,962,199	-		EFB2_03779	0.36	-1.9
3,962,199	-		EFB2_03779	0.36	+1.0
3,962,199	-		EFB2_03779	0.36	+0.8
3,962,199	-		EFB2_03779	0.36	+1.4
3,962,246	+		EFB2_03779	0.41	+1.6
3,962,246	+		EFB2_03779	0.41	+0.9
3,962,320	+		EFB2_03779	0.48	+0.5
3,962,320	+		EFB2_03779	0.48	-1.4
3,962,320	+		EFB2_03779	0.48	+1.4
3,962,321	-		EFB2_03779	0.48	+0.3
3,962,321	-		EFB2_03779	0.48	+0.9
3,962,321	-		EFB2_03779	0.48	+1.0
3,962,331	+		EFB2_03779	0.49	-0.1
3,962,332	-		EFB2_03779	0.49	-2.2
3,962,332	-		EFB2_03779	0.49	-1.2
3,962,332	-		EFB2_03779	0.49	-1.3
3,962,400	+		EFB2_03779	0.55	-1.3
3,962,400	+		EFB2_03779	0.55	+1.7
3,962,400	+		EFB2_03779	0.55	-0.1
3,962,400	+		EFB2_03779	0.55	+0.4
3,962,401	-		EFB2_03779	0.55	-2.7
3,962,401	-		EFB2_03779	0.55	-0.5
3,962,401	-		EFB2_03779	0.55	+0.1
3,962,401	-		EFB2_03779	0.55	-2.2
3,962,439	+		EFB2_03779	0.59	-0.1
3,962,439	+		EFB2_03779	0.59	+2.1
3,962,439	+		EFB2_03779	0.59	+0.3
3,962,439	+		EFB2_03779	0.59	+1.1
3,962,440	-		EFB2_03779	0.59	-1.0
3,962,440	-		EFB2_03779	0.59	+0.3
3,962,441	+		EFB2_03779	0.59	+1.3
3,962,441	+		EFB2_03779	0.59	-1.2
3,962,442	-		EFB2_03779	0.59	+0.1
3,962,442	-		EFB2_03779	0.59	+0.6
3,962,456	+		EFB2_03779	0.60	-1.1
3,962,457	-		EFB2_03779	0.61	+0.5
3,962,526	+		EFB2_03779	0.67	+0.3
3,962,527	-		EFB2_03779	0.67	+0.6
3,962,527	-		EFB2_03779	0.67	+0.1
3,962,540	+		EFB2_03779	0.68	+0.4
3,962,540	+		EFB2_03779	0.68	+1.0
3,962,540	+		EFB2_03779	0.68	+1.7
3,962,540	+		EFB2_03779	0.68	-0.7
3,962,541	-		EFB2_03779	0.68	-0.8
3,962,541	-		EFB2_03779	0.68	+0.8
3,962,544	+		EFB2_03779	0.69	+2.6
3,962,544	+		EFB2_03779	0.69	-0.2
3,962,545	-		EFB2_03779	0.69	-1.0
3,962,607	-		EFB2_03779	0.75	+1.1
3,962,607	-		EFB2_03779	0.75	+1.0
3,962,673	+		EFB2_03779	0.81	-1.8
3,962,674	-		EFB2_03779	0.81	+0.6
3,962,696	+		EFB2_03779	0.83	+2.1
3,962,696	+		EFB2_03779	0.83	-1.0
3,962,731	-		EFB2_03779	0.86	+5.3
3,962,731	-		EFB2_03779	0.86	-0.6
3,962,747	+		EFB2_03779	0.88	-0.3
3,962,747	+		EFB2_03779	0.88	+0.5
3,962,748	-		EFB2_03779	0.88	-0.5
3,962,751	+		EFB2_03779	0.88	+1.1
3,962,751	+		EFB2_03779	0.88	+1.7
3,962,752	-		EFB2_03779	0.88	-0.7
3,962,755	-		EFB2_03779	0.89	+1.1
3,962,789	+				-0.4
3,962,826	-				-0.1
3,962,828	+				-1.0
3,962,829	-				+0.3
3,962,831	+				+0.1
3,962,832	-				-0.3
3,962,840	+				+1.9
3,962,862	+				+0.8
3,962,863	-				+0.6
3,962,863	-				+0.3
3,962,872	-				+0.5
3,963,053	+		EFB2_03780	0.35	-1.6
3,963,102	+		EFB2_03780	0.47	-3.8
3,963,102	+		EFB2_03780	0.47	+0.4
3,963,102	+		EFB2_03780	0.47	-0.7
3,963,102	+		EFB2_03780	0.47	+1.3
3,963,102	+		EFB2_03780	0.47	-1.4
3,963,103	-		EFB2_03780	0.48	-0.5
3,963,103	-		EFB2_03780	0.48	+0.3
3,963,103	-		EFB2_03780	0.48	+1.0
3,963,103	-		EFB2_03780	0.48	-0.2
3,963,108	+		EFB2_03780	0.49	-3.9
3,963,108	+		EFB2_03780	0.49	-1.9
3,963,109	-		EFB2_03780	0.49	+0.2
3,963,109	-		EFB2_03780	0.49	-0.6
3,963,109	-		EFB2_03780	0.49	-0.4
3,963,109	-		EFB2_03780	0.49	+0.6
3,963,109	-		EFB2_03780	0.49	+0.7
3,963,112	+		EFB2_03780	0.50	+0.6
3,963,112	+		EFB2_03780	0.50	-1.3
3,963,112	+		EFB2_03780	0.50	+0.1
3,963,112	+		EFB2_03780	0.50	+1.1
3,963,112	+		EFB2_03780	0.50	-3.4
3,963,113	-		EFB2_03780	0.50	+0.8
3,963,113	-		EFB2_03780	0.50	-0.1
3,963,113	-		EFB2_03780	0.50	+1.5
3,963,113	-		EFB2_03780	0.50	-0.1
3,963,113	-		EFB2_03780	0.50	+0.6
3,963,113	-		EFB2_03780	0.50	-0.1
3,963,194	+		EFB2_03780	0.70	-1.0
3,963,194	+		EFB2_03780	0.70	+2.7
3,963,194	+		EFB2_03780	0.70	+0.1
3,963,194	+		EFB2_03780	0.70	-0.9
3,963,194	+		EFB2_03780	0.70	-1.9
3,963,194	+		EFB2_03780	0.70	+0.3
3,963,194	+		EFB2_03780	0.70	-0.3
3,963,195	-		EFB2_03780	0.70	-1.3
3,963,195	-		EFB2_03780	0.70	+1.5
3,963,195	-		EFB2_03780	0.70	+0.4
3,963,195	-		EFB2_03780	0.70	-0.6
3,963,195	-		EFB2_03780	0.70	-0.6
3,963,224	-		EFB2_03780	0.78	+0.6
3,963,224	-		EFB2_03780	0.78	-3.8
3,963,224	-		EFB2_03780	0.78	-0.3
3,963,235	+		EFB2_03780	0.80	-0.6
3,963,235	+		EFB2_03780	0.80	-1.8
3,963,235	+		EFB2_03780	0.80	+1.3
3,963,235	+		EFB2_03780	0.80	+0.4
3,963,235	+		EFB2_03780	0.80	+0.4
3,963,235	+		EFB2_03780	0.80	+0.3
3,963,235	+		EFB2_03780	0.80	-3.8
3,963,235	+		EFB2_03780	0.80	+1.2
3,963,235	+		EFB2_03780	0.80	+0.1
3,963,235	+		EFB2_03780	0.80	+2.0
3,963,235	+		EFB2_03780	0.80	-2.1
3,963,235	+		EFB2_03780	0.80	+0.0
3,963,235	+		EFB2_03780	0.80	-0.3
3,963,235	+		EFB2_03780	0.80	+1.0
3,963,235	+		EFB2_03780	0.80	+0.5
3,963,235	+		EFB2_03780	0.80	+1.0
3,963,235	+		EFB2_03780	0.80	+0.5
3,963,235	+		EFB2_03780	0.80	-0.5
3,963,235	+		EFB2_03780	0.80	+0.6
3,963,236	-		EFB2_03780	0.81	-1.1
3,963,236	-		EFB2_03780	0.81	+0.5
3,963,236	-		EFB2_03780	0.81	-1.3
3,963,236	-		EFB2_03780	0.81	-0.8
3,963,236	-		EFB2_03780	0.81	-2.1
3,963,236	-		EFB2_03780	0.81	-0.9
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