Strain Fitness in Escherichia fergusonii Becca around EFB2_03712

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,883,351	+		EFB2_03711	0.42	+0.9
3,883,351	+		EFB2_03711	0.42	+2.3
3,883,351	+		EFB2_03711	0.42	+0.3
3,883,352	-		EFB2_03711	0.42	+0.9
3,883,390	+		EFB2_03711	0.45	+0.3
3,883,390	+		EFB2_03711	0.45	+0.4
3,883,391	-		EFB2_03711	0.45	+0.1
3,883,391	-		EFB2_03711	0.45	-1.3
3,883,399	+		EFB2_03711	0.46	-0.1
3,883,399	+		EFB2_03711	0.46	-0.1
3,883,399	+		EFB2_03711	0.46	+1.1
3,883,399	+		EFB2_03711	0.46	+0.8
3,883,399	+		EFB2_03711	0.46	+0.1
3,883,399	+		EFB2_03711	0.46	-0.5
3,883,399	+		EFB2_03711	0.46	-0.1
3,883,399	+		EFB2_03711	0.46	-0.9
3,883,399	+		EFB2_03711	0.46	+0.9
3,883,399	+		EFB2_03711	0.46	+0.3
3,883,399	+		EFB2_03711	0.46	+1.0
3,883,399	+		EFB2_03711	0.46	+1.0
3,883,399	+		EFB2_03711	0.46	-1.0
3,883,399	+		EFB2_03711	0.46	-2.9
3,883,399	+		EFB2_03711	0.46	-1.2
3,883,399	+		EFB2_03711	0.46	+0.8
3,883,400	-		EFB2_03711	0.46	-0.2
3,883,400	-		EFB2_03711	0.46	-1.0
3,883,400	-		EFB2_03711	0.46	+0.4
3,883,400	-		EFB2_03711	0.46	-0.9
3,883,400	-		EFB2_03711	0.46	-2.6
3,883,400	-		EFB2_03711	0.46	-1.4
3,883,400	-		EFB2_03711	0.46	+0.2
3,883,400	-		EFB2_03711	0.46	-2.1
3,883,400	-		EFB2_03711	0.46	+2.1
3,883,400	-		EFB2_03711	0.46	+0.1
3,883,400	-		EFB2_03711	0.46	-1.2
3,883,400	-		EFB2_03711	0.46	-1.6
3,883,400	-		EFB2_03711	0.46	-1.2
3,883,463	+		EFB2_03711	0.52	+0.5
3,883,473	+		EFB2_03711	0.53	-0.2
3,883,473	+		EFB2_03711	0.53	+1.8
3,883,473	+		EFB2_03711	0.53	-1.4
3,883,473	+		EFB2_03711	0.53	+0.9
3,883,473	+		EFB2_03711	0.53	+1.5
3,883,473	+		EFB2_03711	0.53	-1.2
3,883,473	+		EFB2_03711	0.53	+1.1
3,883,473	+		EFB2_03711	0.53	+0.8
3,883,473	+		EFB2_03711	0.53	-0.8
3,883,474	-		EFB2_03711	0.53	-0.4
3,883,474	-		EFB2_03711	0.53	+0.6
3,883,474	-		EFB2_03711	0.53	+0.3
3,883,474	-		EFB2_03711	0.53	+1.5
3,883,537	+		EFB2_03711	0.59	-0.4
3,883,538	-		EFB2_03711	0.59	+1.8
3,883,548	+		EFB2_03711	0.60	+1.1
3,883,548	+		EFB2_03711	0.60	+3.0
3,883,548	+		EFB2_03711	0.60	+0.5
3,883,548	+		EFB2_03711	0.60	+1.1
3,883,548	+		EFB2_03711	0.60	+1.6
3,883,548	+		EFB2_03711	0.60	+1.6
3,883,548	+		EFB2_03711	0.60	-0.4
3,883,549	-		EFB2_03711	0.60	-0.6
3,883,549	-		EFB2_03711	0.60	-0.4
3,883,549	-		EFB2_03711	0.60	-1.6
3,883,549	-		EFB2_03711	0.60	-2.6
3,883,549	-		EFB2_03711	0.60	-1.0
3,883,549	-		EFB2_03711	0.60	+0.2
3,883,591	+		EFB2_03711	0.64	-0.3
3,883,591	+		EFB2_03711	0.64	+0.5
3,883,592	-		EFB2_03711	0.65	-0.4
3,883,621	+		EFB2_03711	0.67	-0.4
3,883,621	+		EFB2_03711	0.67	+2.7
3,883,621	+		EFB2_03711	0.67	-1.9
3,883,621	+		EFB2_03711	0.67	+1.2
3,883,622	-		EFB2_03711	0.67	-1.7
3,883,622	-		EFB2_03711	0.67	+2.0
3,883,622	-		EFB2_03711	0.67	+1.2
3,883,622	-		EFB2_03711	0.67	-1.7
3,883,622	-		EFB2_03711	0.67	+0.6
3,883,622	-		EFB2_03711	0.67	-1.7
3,883,622	-		EFB2_03711	0.67	-1.4
3,883,622	-		EFB2_03711	0.67	+0.0
3,883,623	+		EFB2_03711	0.68	+0.8
3,883,623	+		EFB2_03711	0.68	-1.2
3,883,623	+		EFB2_03711	0.68	+1.4
3,883,623	+		EFB2_03711	0.68	-0.9
3,883,623	+		EFB2_03711	0.68	-3.1
3,883,623	+		EFB2_03711	0.68	-2.8
3,883,623	+		EFB2_03711	0.68	-1.7
3,883,623	+		EFB2_03711	0.68	-2.3
3,883,623	+		EFB2_03711	0.68	-1.2
3,883,623	+		EFB2_03711	0.68	-2.5
3,883,623	+		EFB2_03711	0.68	-0.3
3,883,623	+		EFB2_03711	0.68	-1.5
3,883,623	+		EFB2_03711	0.68	+0.2
3,883,623	+		EFB2_03711	0.68	-1.8
3,883,624	-		EFB2_03711	0.68	-0.1
3,883,624	-		EFB2_03711	0.68	+0.4
3,883,624	-		EFB2_03711	0.68	+0.8
3,883,624	-		EFB2_03711	0.68	-0.2
3,883,624	-		EFB2_03711	0.68	+0.9
3,883,624	-		EFB2_03711	0.68	+2.2
3,883,624	-		EFB2_03711	0.68	-0.0
3,883,624	-		EFB2_03711	0.68	+1.1
3,883,624	-		EFB2_03711	0.68	+0.3
3,883,624	-		EFB2_03711	0.68	-2.1
3,883,624	-		EFB2_03711	0.68	-0.9
3,883,624	-		EFB2_03711	0.68	+0.8
3,883,624	-		EFB2_03711	0.68	+0.2
3,883,624	-		EFB2_03711	0.68	-2.4
3,883,624	-		EFB2_03711	0.68	+0.6
3,883,624	-		EFB2_03711	0.68	-0.0
3,883,624	-		EFB2_03711	0.68	-1.1
3,883,624	-		EFB2_03711	0.68	-1.2
3,883,624	-		EFB2_03711	0.68	+0.4
3,883,624	-		EFB2_03711	0.68	-1.1
3,883,624	-		EFB2_03711	0.68	-2.4
3,883,624	-		EFB2_03711	0.68	+0.8
3,883,638	+		EFB2_03711	0.69	+0.7
3,883,638	+		EFB2_03711	0.69	+0.2
3,883,638	+		EFB2_03711	0.69	-1.9
3,883,638	+		EFB2_03711	0.69	-0.4
3,883,638	+		EFB2_03711	0.69	-0.7
3,883,638	+		EFB2_03711	0.69	-2.3
3,883,638	+		EFB2_03711	0.69	+0.1
3,883,638	+		EFB2_03711	0.69	+0.1
3,883,638	+		EFB2_03711	0.69	-1.6
3,883,638	+		EFB2_03711	0.69	+1.4
3,883,638	+		EFB2_03711	0.69	-2.5
3,883,638	+		EFB2_03711	0.69	+0.8
3,883,638	+		EFB2_03711	0.69	-0.5
3,883,638	+		EFB2_03711	0.69	-0.1
3,883,638	+		EFB2_03711	0.69	+0.3
3,883,639	-		EFB2_03711	0.69	+0.0
3,883,639	-		EFB2_03711	0.69	-0.5
3,883,639	-		EFB2_03711	0.69	+0.9
3,883,639	-		EFB2_03711	0.69	+0.2
3,883,639	-		EFB2_03711	0.69	+0.4
3,883,639	-		EFB2_03711	0.69	+0.6
3,883,639	-		EFB2_03711	0.69	-0.4
3,883,639	-		EFB2_03711	0.69	-2.7
3,883,639	-		EFB2_03711	0.69	-0.0
3,883,639	-		EFB2_03711	0.69	-1.3
3,883,639	-		EFB2_03711	0.69	-0.4
3,883,639	-		EFB2_03711	0.69	-1.7
3,883,639	-		EFB2_03711	0.69	-0.1
3,883,639	-		EFB2_03711	0.69	+0.7
3,883,639	-		EFB2_03711	0.69	+0.4
3,883,639	-		EFB2_03711	0.69	+1.0
3,883,639	-		EFB2_03711	0.69	-0.9
3,883,639	-		EFB2_03711	0.69	+0.7
3,883,639	-		EFB2_03711	0.69	+0.1
3,883,639	-		EFB2_03711	0.69	+0.9
3,883,647	+		EFB2_03711	0.70	+1.5
3,883,647	+		EFB2_03711	0.70	-0.6
3,883,647	+		EFB2_03711	0.70	-0.2
3,883,647	+		EFB2_03711	0.70	+0.3
3,883,647	+		EFB2_03711	0.70	+0.4
3,883,648	-		EFB2_03711	0.70	-1.1
3,883,684	+		EFB2_03711	0.73	+1.1
3,883,684	+		EFB2_03711	0.73	+1.1
3,883,684	+		EFB2_03711	0.73	+1.1
3,883,684	+		EFB2_03711	0.73	-2.0
3,883,684	+		EFB2_03711	0.73	+1.3
3,883,685	-		EFB2_03711	0.73	+0.2
3,883,685	-		EFB2_03711	0.73	+0.1
3,883,685	-		EFB2_03711	0.73	+2.6
3,883,685	-		EFB2_03711	0.73	+0.7
3,883,685	-		EFB2_03711	0.73	-3.3
3,883,685	-		EFB2_03711	0.73	-2.2
3,883,739	+		EFB2_03711	0.79	+1.2
3,883,739	+		EFB2_03711	0.79	-0.3
3,883,740	-		EFB2_03711	0.79	-1.4
3,883,797	+		EFB2_03711	0.84	-0.8
3,883,798	-		EFB2_03711	0.84	-0.0
3,883,858	-		EFB2_03711	0.90	-0.9
3,883,858	-		EFB2_03711	0.90	+1.4
3,883,858	-		EFB2_03711	0.90	-0.8
3,883,931	-				+1.0
3,883,939	-				+0.8
3,883,939	-				+0.0
3,883,939	-				-2.4
3,883,939	-				+0.8
3,883,939	-				-0.7
3,883,970	+				+0.6
3,883,971	-				-0.3
3,883,971	-				-0.1
3,883,980	+				+0.5
3,883,980	+				-1.0
3,883,980	+				+0.6
3,883,980	+				+1.1
3,883,980	+				-0.8
3,883,980	+				-0.2
3,883,980	+				+0.1
3,883,980	+				+1.3
3,883,981	-				-2.3
3,883,981	-				-1.4
3,883,981	-				+0.4
3,883,981	-				+1.7
3,883,981	-				-3.3
3,883,981	-				-0.8
3,883,981	-				+0.0
3,883,981	-				-2.5
3,883,981	-				-0.4
3,883,981	-				+2.5
3,883,981	-				-0.0
3,883,981	-				+0.4
3,883,984	+				+0.4
3,883,984	+				-0.7
3,883,984	+				+0.1
3,883,984	+				-0.5
3,883,984	+				+0.5
3,883,984	+				-0.4
3,883,984	+				-3.1
3,883,984	+				+1.3
3,883,984	+				-0.6
3,883,984	+				-0.2
3,883,984	+				+1.4
3,883,984	+				-1.1
3,883,984	+				+1.8
3,883,984	+				+1.1
3,883,984	+				+1.7
3,883,984	+				-0.9
3,883,984	+				+0.4
3,883,984	+				-0.7
3,883,984	+				+0.5
3,883,984	+				+1.0
3,883,984	+				-3.5
3,883,984	+				+0.1
3,883,984	+				-0.1
3,883,984	+				-0.9
3,883,984	+				-1.4
3,883,984	+				-0.4
3,883,984	+				+0.0
3,883,984	+				+0.4
3,883,984	+				+0.4
3,883,984	+				+0.6
3,883,984	+				+0.8
3,883,984	+				+0.6
3,883,984	+				+3.7
3,883,984	+				-0.7
3,883,984	+				-0.1
3,883,984	+				-2.4
3,883,984	+				-1.7
3,883,985	-				-2.5
3,883,985	-				+1.8
3,883,985	-				-0.8
3,883,985	-				-1.2
3,883,985	-				+0.7
3,883,985	-				+1.3
3,883,985	-				+1.6
3,883,985	-				+0.1
3,883,985	-				-0.2
3,883,985	-				+0.3
3,883,985	-				-2.7
3,883,985	-				+0.3
3,883,985	-				-2.0
3,883,985	-				-0.1
3,883,985	-				-0.6
3,883,985	-				-0.4
3,883,985	-				-0.5
3,883,985	-				-0.6
3,883,985	-				-1.9
3,883,985	-				-0.4
3,883,985	-				-0.0
3,883,985	-				-1.2
3,883,985	-				-1.3
3,883,985	-				-0.7
3,883,985	-				-0.0
3,883,985	-				+0.2
3,883,985	-				-1.1
3,883,985	-				-0.4
3,883,985	-				-3.9
3,883,985	-				-2.4
3,883,985	-				+1.7
3,883,985	-				+0.6
3,883,985	-				-2.2
3,883,985	-				-0.2
3,883,985	-				+1.1
3,883,985	-				+0.6
3,883,985	-				-1.2
3,883,990	+				+0.9
3,883,990	+				-1.3
3,883,990	+				+0.7
3,883,990	+				-1.1
3,883,990	+				-1.1
3,883,990	+				-2.9
3,883,990	+				-0.9
3,883,990	+				-0.7
3,883,990	+				+0.4
3,883,991	-				-1.2
3,883,991	-				-0.7
3,883,991	-				+0.0
3,883,991	-				-3.4
3,883,991	-				-1.3
3,883,991	-				-1.3
3,883,991	-				+0.9
3,883,991	-				+0.7
3,883,991	-				+1.2
3,884,007	+				-0.8
3,884,007	+				+0.4
3,884,007	+				-1.4
3,884,007	+				+1.0
3,884,007	+				-0.4
3,884,007	+				-0.4
3,884,007	+				+0.6
3,884,007	+				-1.0
3,884,008	-				+0.4
3,884,008	-				-0.8
3,884,008	-				+0.7
3,884,008	-				+0.7
3,884,008	-				-2.8
3,884,008	-				-0.3
3,884,038	+				-4.1
3,884,038	+				+1.1
3,884,039	-				-1.4
3,884,039	-				-1.9
3,884,039	-				+0.3
3,884,039	-				-2.5
3,884,039	-				-0.5
3,884,039	-				+1.5
3,884,040	+				+1.7
3,884,040	+				-2.8
3,884,040	+				+0.1
3,884,040	+				-0.2
3,884,041	-				-3.3
3,884,041	-				+1.1
3,884,041	-				-0.2
3,884,041	-				+0.2
3,884,041	-				-0.7
3,884,041	-				-0.1
3,884,047	+				-0.2
3,884,047	+				-0.7
3,884,047	+				+0.3
3,884,048	-				-2.0
3,884,048	-				-0.6
3,884,048	-				+0.1
3,884,051	+				-1.6
3,884,052	-				-0.8
3,884,052	-				+0.7
3,884,052	-				-1.4
3,884,052	-				+1.7
3,884,052	-				-1.2
3,884,071	+				-3.0
3,884,116	+				+1.0
3,884,116	+				+1.9
3,884,129	+				+1.0
3,884,129	+				-1.8
3,884,129	+				-0.2
3,884,129	+				-1.2
3,884,129	+				-0.1
3,884,129	+				+0.8
3,884,130	-				-3.3
3,884,130	-				+1.7
3,884,130	-				+0.4
3,884,130	-				+0.2
3,884,130	-				-0.6
3,884,130	-				-1.0
3,884,130	-				+0.2
3,884,131	+				-0.9
3,884,131	+				+0.6
3,884,131	+				+2.6
3,884,131	+				+0.1
3,884,131	+				-1.2
3,884,131	+				-0.3
3,884,131	+				+2.1
3,884,131	+				+0.1
3,884,131	+				-1.0
3,884,131	+				-2.6
3,884,131	+				-3.0
3,884,131	+				-2.0
3,884,131	+				+0.6
3,884,131	+				+0.3
3,884,131	+				+0.5
3,884,131	+				+0.2
3,884,131	+				-3.1
3,884,131	+				-2.1
3,884,131	+				+1.8
3,884,131	+				-0.1
3,884,131	+				-0.2
3,884,131	+				-0.2
3,884,131	+				+4.7
3,884,131	+				+0.6
3,884,131	+				-2.8
3,884,131	+				-0.4
3,884,132	-				+0.1
3,884,132	-				+0.8
3,884,132	-				-3.2
3,884,132	-				+0.1
3,884,132	-				+0.8
3,884,132	-				+0.0
3,884,132	-				+0.4
3,884,132	-				-0.1
3,884,132	-				-1.4
3,884,132	-				-0.3
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