Strain Fitness in Escherichia fergusonii Becca around EFB2_03659

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,825,368	+				-0.3
3,825,368	+				+1.0
3,825,368	+				-0.5
3,825,368	+				+0.8
3,825,369	-				+0.4
3,825,369	-				+0.0
3,825,369	-				-0.1
3,825,369	-				-1.8
3,825,369	-				+1.0
3,825,369	-				-1.2
3,825,369	-				-1.3
3,825,414	+				-0.7
3,825,414	+				-0.2
3,825,414	+				+1.8
3,825,414	+				+0.3
3,825,414	+				+0.4
3,825,414	+				+0.9
3,825,414	+				-0.8
3,825,414	+				-1.8
3,825,414	+				-0.5
3,825,414	+				+1.0
3,825,414	+				+1.1
3,825,414	+				-0.4
3,825,414	+				+0.1
3,825,415	-				-0.3
3,825,415	-				+0.1
3,825,415	-				+0.3
3,825,415	-				-0.4
3,825,415	-				+2.9
3,825,415	-				-1.5
3,825,415	-				+1.0
3,825,415	-				-1.1
3,825,415	-				-0.0
3,825,419	+				-0.9
3,825,419	+				+0.7
3,825,419	+				+0.6
3,825,419	+				+0.5
3,825,420	-				+0.1
3,825,420	-				-0.7
3,825,420	-				-1.8
3,825,420	-				-2.9
3,825,438	+				+1.6
3,825,439	-				-4.4
3,825,439	-				+0.6
3,825,439	-				-0.1
3,825,450	+				+1.3
3,825,450	+				-0.7
3,825,450	+				-0.1
3,825,450	+				+1.1
3,825,451	-				-0.7
3,825,451	-				-1.3
3,825,451	-				-1.5
3,825,451	-				-0.3
3,825,451	-				+2.0
3,825,451	-				-1.5
3,825,451	-				-0.4
3,825,451	-				-1.0
3,825,451	-				+0.2
3,825,451	-				+0.8
3,825,471	+				-1.2
3,825,471	+				-2.6
3,825,472	-				+1.0
3,825,472	-				-1.4
3,825,550	+		EFB2_03658	0.12	-0.3
3,825,580	+		EFB2_03658	0.16	+1.0
3,825,581	-		EFB2_03658	0.16	+1.1
3,825,594	+		EFB2_03658	0.18	+1.1
3,825,594	+		EFB2_03658	0.18	+1.5
3,825,594	+		EFB2_03658	0.18	-1.0
3,825,594	+		EFB2_03658	0.18	+0.8
3,825,594	+		EFB2_03658	0.18	-2.1
3,825,594	+		EFB2_03658	0.18	-0.0
3,825,594	+		EFB2_03658	0.18	-3.1
3,825,594	+		EFB2_03658	0.18	+0.5
3,825,594	+		EFB2_03658	0.18	-3.4
3,825,594	+		EFB2_03658	0.18	-1.9
3,825,594	+		EFB2_03658	0.18	-0.0
3,825,594	+		EFB2_03658	0.18	-0.4
3,825,595	-		EFB2_03658	0.18	-0.8
3,825,595	-		EFB2_03658	0.18	+0.9
3,825,595	-		EFB2_03658	0.18	+0.2
3,825,595	-		EFB2_03658	0.18	-1.3
3,825,595	-		EFB2_03658	0.18	-1.9
3,825,595	-		EFB2_03658	0.18	-0.8
3,825,595	-		EFB2_03658	0.18	-2.6
3,825,595	-		EFB2_03658	0.18	-1.0
3,825,595	-		EFB2_03658	0.18	-1.2
3,825,595	-		EFB2_03658	0.18	+0.4
3,825,595	-		EFB2_03658	0.18	-1.5
3,825,595	-		EFB2_03658	0.18	+0.7
3,825,595	-		EFB2_03658	0.18	+0.8
3,825,595	-		EFB2_03658	0.18	+1.3
3,825,595	-		EFB2_03658	0.18	-1.7
3,825,595	-		EFB2_03658	0.18	-0.4
3,825,595	-		EFB2_03658	0.18	+0.4
3,825,595	-		EFB2_03658	0.18	-0.6
3,825,595	-		EFB2_03658	0.18	+0.8
3,825,620	+		EFB2_03658	0.22	+0.9
3,825,620	+		EFB2_03658	0.22	-1.2
3,825,620	+		EFB2_03658	0.22	+0.6
3,825,620	+		EFB2_03658	0.22	-1.4
3,825,621	-		EFB2_03658	0.22	-0.3
3,825,639	+		EFB2_03658	0.24	+0.2
3,825,639	+		EFB2_03658	0.24	+1.3
3,825,639	+		EFB2_03658	0.24	-3.3
3,825,640	-		EFB2_03658	0.25	+1.2
3,825,679	+		EFB2_03658	0.30	+0.3
3,825,749	+		EFB2_03658	0.40	-1.1
3,825,749	+		EFB2_03658	0.40	+1.7
3,825,749	+		EFB2_03658	0.40	+0.2
3,825,750	-		EFB2_03658	0.41	-0.1
3,825,793	+		EFB2_03658	0.47	+1.1
3,825,794	-		EFB2_03658	0.47	+0.6
3,825,803	+		EFB2_03658	0.48	+0.5
3,825,853	+		EFB2_03658	0.56	-0.4
3,825,853	+		EFB2_03658	0.56	+0.4
3,825,853	+		EFB2_03658	0.56	+2.3
3,825,853	+		EFB2_03658	0.56	-0.0
3,825,853	+		EFB2_03658	0.56	-0.0
3,825,853	+		EFB2_03658	0.56	-0.1
3,825,853	+		EFB2_03658	0.56	-0.2
3,825,854	-		EFB2_03658	0.56	-0.3
3,825,854	-		EFB2_03658	0.56	-1.5
3,825,854	-		EFB2_03658	0.56	-0.7
3,825,854	-		EFB2_03658	0.56	-0.3
3,825,854	-		EFB2_03658	0.56	-1.0
3,825,854	-		EFB2_03658	0.56	+0.2
3,825,854	-		EFB2_03658	0.56	+0.2
3,825,854	-		EFB2_03658	0.56	+1.5
3,825,854	-		EFB2_03658	0.56	-0.1
3,825,854	-		EFB2_03658	0.56	-0.1
3,825,854	-		EFB2_03658	0.56	+1.6
3,825,854	-		EFB2_03658	0.56	+0.2
3,825,854	-		EFB2_03658	0.56	-1.6
3,825,855	+		EFB2_03658	0.56	+0.1
3,825,855	+		EFB2_03658	0.56	-3.0
3,825,855	+		EFB2_03658	0.56	+0.7
3,825,855	+		EFB2_03658	0.56	-0.3
3,825,855	+		EFB2_03658	0.56	+0.6
3,825,855	+		EFB2_03658	0.56	+3.0
3,825,855	+		EFB2_03658	0.56	-0.2
3,825,855	+		EFB2_03658	0.56	-0.1
3,825,855	+		EFB2_03658	0.56	+0.0
3,825,855	+		EFB2_03658	0.56	-0.7
3,825,855	+		EFB2_03658	0.56	+1.3
3,825,855	+		EFB2_03658	0.56	+1.0
3,825,855	+		EFB2_03658	0.56	+2.1
3,825,855	+		EFB2_03658	0.56	+0.4
3,825,855	+		EFB2_03658	0.56	-0.0
3,825,855	+		EFB2_03658	0.56	+0.4
3,825,855	+		EFB2_03658	0.56	+0.6
3,825,855	+		EFB2_03658	0.56	+0.1
3,825,855	+		EFB2_03658	0.56	+0.5
3,825,855	+		EFB2_03658	0.56	-1.7
3,825,856	-		EFB2_03658	0.56	+1.9
3,825,856	-		EFB2_03658	0.56	-0.6
3,825,856	-		EFB2_03658	0.56	-1.2
3,825,856	-		EFB2_03658	0.56	+1.0
3,825,856	-		EFB2_03658	0.56	+2.6
3,825,856	-		EFB2_03658	0.56	+0.5
3,825,856	-		EFB2_03658	0.56	-2.1
3,825,856	-		EFB2_03658	0.56	+1.0
3,825,856	-		EFB2_03658	0.56	-0.2
3,825,856	-		EFB2_03658	0.56	-1.8
3,825,856	-		EFB2_03658	0.56	+0.2
3,825,856	-		EFB2_03658	0.56	-0.3
3,825,856	-		EFB2_03658	0.56	-1.2
3,825,856	-		EFB2_03658	0.56	+0.1
3,825,856	-		EFB2_03658	0.56	-2.9
3,825,856	-		EFB2_03658	0.56	-0.2
3,825,856	-		EFB2_03658	0.56	-1.6
3,825,856	-		EFB2_03658	0.56	+1.9
3,825,856	-		EFB2_03658	0.56	-3.3
3,825,856	-		EFB2_03658	0.56	+0.8
3,825,856	-		EFB2_03658	0.56	+1.1
3,825,856	-		EFB2_03658	0.56	-0.5
3,825,856	-		EFB2_03658	0.56	-0.0
3,825,856	-		EFB2_03658	0.56	+0.7
3,825,856	-		EFB2_03658	0.56	+1.1
3,825,856	-		EFB2_03658	0.56	-0.6
3,825,920	+		EFB2_03658	0.65	+0.1
3,825,920	+		EFB2_03658	0.65	+0.1
3,825,920	+		EFB2_03658	0.65	+0.2
3,825,920	+		EFB2_03658	0.65	+1.6
3,825,920	+		EFB2_03658	0.65	-0.0
3,825,920	+		EFB2_03658	0.65	-0.1
3,825,920	+		EFB2_03658	0.65	+1.0
3,825,920	+		EFB2_03658	0.65	-0.2
3,825,920	+		EFB2_03658	0.65	-0.8
3,825,921	-		EFB2_03658	0.65	+1.7
3,825,921	-		EFB2_03658	0.65	+0.3
3,825,921	-		EFB2_03658	0.65	-2.8
3,825,921	-		EFB2_03658	0.65	-1.3
3,825,992	+		EFB2_03658	0.76	+0.3
3,825,993	-		EFB2_03658	0.76	-0.6
3,825,993	-		EFB2_03658	0.76	-0.6
3,825,993	-		EFB2_03658	0.76	+0.9
3,825,993	-		EFB2_03658	0.76	+2.5
3,825,993	-		EFB2_03658	0.76	-2.5
3,825,993	-		EFB2_03658	0.76	+0.3
3,826,013	+		EFB2_03658	0.79	+1.0
3,826,013	+		EFB2_03658	0.79	-1.2
3,826,056	+		EFB2_03658	0.85	+0.7
3,826,056	+		EFB2_03658	0.85	-0.9
3,826,056	+		EFB2_03658	0.85	+1.2
3,826,056	+		EFB2_03658	0.85	+0.1
3,826,057	-		EFB2_03658	0.85	-0.0
3,826,057	-		EFB2_03658	0.85	+0.9
3,826,057	-		EFB2_03658	0.85	-2.1
3,826,057	-		EFB2_03658	0.85	+0.7
3,826,057	-		EFB2_03658	0.85	-1.1
3,826,057	-		EFB2_03658	0.85	-0.0
3,826,057	-		EFB2_03658	0.85	-2.1
3,826,057	-		EFB2_03658	0.85	+0.8
3,826,136	+				+2.4
3,826,137	-				+0.6
3,826,137	-				-0.2
3,826,137	-				-0.2
3,826,137	-				+1.1
3,826,147	+				+1.5
3,826,147	+				+0.9
3,826,147	+				-0.2
3,826,147	+				+0.4
3,826,147	+				-2.3
3,826,147	+				+1.1
3,826,148	-				+0.3
3,826,148	-				+1.9
3,826,148	-				+1.3
3,826,148	-				+0.5
3,826,148	-				-0.1
3,826,148	-				-0.7
3,826,174	+				-1.6
3,826,174	+				+0.9
3,826,174	+				-0.1
3,826,174	+				-0.0
3,826,174	+				+0.5
3,826,174	+				-0.2
3,826,174	+				+0.3
3,826,174	+				+1.0
3,826,175	-				+1.0
3,826,175	-				-0.2
3,826,175	-				-1.3
3,826,175	-				-1.0
3,826,175	-				+0.0
3,826,175	-				-0.6
3,826,175	-				+1.1
3,826,175	-				+0.2
3,826,175	-				-2.3
3,826,177	+				+0.8
3,826,177	+				-1.3
3,826,177	+				-2.4
3,826,177	+				+4.4
3,826,177	+				-0.6
3,826,177	+				-0.2
3,826,177	+				-0.6
3,826,177	+				+0.7
3,826,177	+				-1.0
3,826,178	-				-2.2
3,826,178	-				-0.3
3,826,178	-				+0.7
3,826,178	-				+0.3
3,826,178	-				+0.4
3,826,178	-				+1.1
3,826,178	-				+1.0
3,826,178	-				+1.0
3,826,178	-				+0.2
3,826,178	-				-0.2
3,826,178	-				+0.6
3,826,178	-				-2.6
3,826,178	-				+0.9
3,826,178	-				-0.7
3,826,178	-				+0.3
3,826,178	-				-1.8
3,826,178	-				-0.1
3,826,178	-				-0.2
3,826,181	+				+0.8
3,826,181	+				+0.2
3,826,181	+				+0.5
3,826,181	+				-0.4
3,826,181	+				-2.5
3,826,181	+				-0.6
3,826,181	+				-1.0
3,826,181	+				+1.9
3,826,181	+				-3.6
3,826,181	+				-0.5
3,826,181	+				-1.4
3,826,181	+				-0.4
3,826,181	+				+0.1
3,826,182	-				+1.1
3,826,182	-				+1.1
3,826,182	-				+0.9
3,826,182	-				-0.2
3,826,182	-				-1.6
3,826,182	-				-0.1
3,826,182	-				-0.2
3,826,182	-				-1.7
3,826,182	-				+0.6
3,826,182	-				-3.3
3,826,196	-				-0.3
3,826,196	-				+1.6
3,826,196	-				-3.5
3,826,209	+				-1.1
3,826,209	+				+0.7
3,826,210	-				-1.2
3,826,210	-				-1.2
3,826,210	-				-0.5
3,826,223	-				-1.3
3,826,223	-				-0.5
3,826,234	-				+1.2
3,826,253	+				+2.0
3,826,253	+				-1.8
3,826,253	+				+0.9
3,826,253	+				-1.2
3,826,253	+				+0.6
3,826,253	+				-3.0
3,826,253	+				-0.1
3,826,253	+				-1.7
3,826,253	+				-2.0
3,826,253	+				+0.5
3,826,253	+				+0.5
3,826,253	+				-1.4
3,826,253	+				+0.4
3,826,253	+				-1.2
3,826,253	+				+1.0
3,826,254	-				-0.2
3,826,254	-				+0.3
3,826,254	-				-1.5
3,826,254	-				-0.9
3,826,254	-				-0.5
3,826,254	-				-2.0
3,826,254	-				+1.0
3,826,254	-				-1.6
3,826,254	-				+0.6
3,826,254	-				-3.2
3,826,254	-				+1.4
3,826,254	-				-2.1
3,826,264	+				+0.2
3,826,312	+				-2.9
3,826,314	+				-3.3
3,826,315	-				+0.9
3,826,315	-				-1.2
3,826,348	+				+0.2
3,826,394	+				+1.2
3,826,394	+				-0.7
3,826,394	+				+0.1
3,826,395	-				+1.0
3,826,395	-				-1.7
3,826,395	-				-0.4
3,826,399	+				+0.5
3,826,399	+				-3.1
3,826,399	+				+0.7
3,826,399	+				-1.0
3,826,399	+				+0.1
3,826,400	-				-0.6
3,826,400	-				+0.5
3,826,400	-				-0.1
3,826,400	-				+0.7
3,826,477	+		EFB2_03659	0.11	+1.9
3,826,478	-		EFB2_03659	0.11	+0.3
3,826,520	+		EFB2_03659	0.14	+1.0
3,826,521	-		EFB2_03659	0.14	-0.9
3,826,521	-		EFB2_03659	0.14	+1.6
3,826,533	+		EFB2_03659	0.15	+0.3
3,826,533	+		EFB2_03659	0.15	-0.0
3,826,533	+		EFB2_03659	0.15	+1.6
3,826,534	-		EFB2_03659	0.15	-1.1
3,826,534	-		EFB2_03659	0.15	+1.0
3,826,535	+		EFB2_03659	0.15	-1.0
3,826,535	+		EFB2_03659	0.15	+1.0
3,826,535	+		EFB2_03659	0.15	+0.8
3,826,535	+		EFB2_03659	0.15	+0.7
3,826,535	+		EFB2_03659	0.15	-1.7
3,826,535	+		EFB2_03659	0.15	+0.2
3,826,535	+		EFB2_03659	0.15	-1.1
3,826,535	+		EFB2_03659	0.15	-2.1
3,826,535	+		EFB2_03659	0.15	-1.3
3,826,535	+		EFB2_03659	0.15	-0.7
3,826,535	+		EFB2_03659	0.15	+0.6
3,826,535	+		EFB2_03659	0.15	+1.1
3,826,535	+		EFB2_03659	0.15	+0.6
3,826,535	+		EFB2_03659	0.15	+0.5
3,826,535	+		EFB2_03659	0.15	-2.3
3,826,536	-		EFB2_03659	0.16	-1.6
3,826,536	-		EFB2_03659	0.16	+0.8
3,826,536	-		EFB2_03659	0.16	-1.8
3,826,536	-		EFB2_03659	0.16	+0.2
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