Strain Fitness in Escherichia fergusonii Becca around EFB2_02967

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,097,724	+		EFB2_02965	0.43	-0.2
3,097,724	+		EFB2_02965	0.43	+0.3
3,097,724	+		EFB2_02965	0.43	-1.1
3,097,724	+		EFB2_02965	0.43	-2.8
3,097,724	+		EFB2_02965	0.43	-0.5
3,097,724	+		EFB2_02965	0.43	+1.2
3,097,724	+		EFB2_02965	0.43	+0.4
3,097,724	+		EFB2_02965	0.43	-2.0
3,097,724	+		EFB2_02965	0.43	+0.0
3,097,724	+		EFB2_02965	0.43	-2.4
3,097,724	+		EFB2_02965	0.43	-0.6
3,097,724	+		EFB2_02965	0.43	-0.6
3,097,725	-		EFB2_02965	0.43	+1.3
3,097,725	-		EFB2_02965	0.43	+2.2
3,097,725	-		EFB2_02965	0.43	+1.9
3,097,725	-		EFB2_02965	0.43	-1.0
3,097,725	-		EFB2_02965	0.43	+0.9
3,097,725	-		EFB2_02965	0.43	+2.4
3,097,793	+		EFB2_02965	0.50	-0.6
3,097,793	+		EFB2_02965	0.50	+1.2
3,097,793	+		EFB2_02965	0.50	-2.2
3,097,793	+		EFB2_02965	0.50	-1.1
3,097,793	+		EFB2_02965	0.50	-0.2
3,097,793	+		EFB2_02965	0.50	-1.0
3,097,794	-		EFB2_02965	0.50	-0.4
3,097,794	-		EFB2_02965	0.50	-3.4
3,097,794	-		EFB2_02965	0.50	-0.8
3,097,794	-		EFB2_02965	0.50	+1.0
3,097,794	-		EFB2_02965	0.50	-0.6
3,097,794	-		EFB2_02965	0.50	-3.4
3,097,794	-		EFB2_02965	0.50	-2.1
3,097,794	-		EFB2_02965	0.50	-0.8
3,097,794	-		EFB2_02965	0.50	-1.6
3,097,794	-		EFB2_02965	0.50	-0.4
3,097,794	-		EFB2_02965	0.50	-0.6
3,097,794	-		EFB2_02965	0.50	+1.6
3,097,794	-		EFB2_02965	0.50	-0.6
3,097,794	-		EFB2_02965	0.50	+0.1
3,097,794	-		EFB2_02965	0.50	-0.8
3,097,845	-		EFB2_02965	0.56	-1.6
3,097,871	-		EFB2_02965	0.59	+0.9
3,097,893	+		EFB2_02965	0.62	+3.3
3,097,893	+		EFB2_02965	0.62	-0.8
3,097,893	+		EFB2_02965	0.62	-0.2
3,097,894	-		EFB2_02965	0.62	+0.1
3,097,894	-		EFB2_02965	0.62	-2.4
3,097,894	-		EFB2_02965	0.62	-1.1
3,097,943	+		EFB2_02965	0.67	-2.7
3,097,943	+		EFB2_02965	0.67	-0.6
3,097,943	+		EFB2_02965	0.67	+0.6
3,097,943	+		EFB2_02965	0.67	-2.3
3,097,943	+		EFB2_02965	0.67	-0.2
3,097,944	-		EFB2_02965	0.67	-2.0
3,097,952	+		EFB2_02965	0.68	-0.4
3,097,952	+		EFB2_02965	0.68	+0.4
3,097,952	+		EFB2_02965	0.68	+0.1
3,097,952	+		EFB2_02965	0.68	+0.2
3,097,953	-		EFB2_02965	0.68	-1.1
3,097,954	+		EFB2_02965	0.68	+0.4
3,097,954	+		EFB2_02965	0.68	-0.9
3,097,954	+		EFB2_02965	0.68	-0.0
3,097,954	+		EFB2_02965	0.68	-0.4
3,097,954	+		EFB2_02965	0.68	+0.2
3,097,954	+		EFB2_02965	0.68	+0.3
3,097,954	+		EFB2_02965	0.68	-0.5
3,097,955	-		EFB2_02965	0.68	+0.9
3,097,955	-		EFB2_02965	0.68	-0.7
3,097,955	-		EFB2_02965	0.68	-0.5
3,097,955	-		EFB2_02965	0.68	+2.8
3,097,955	-		EFB2_02965	0.68	+0.2
3,097,955	-		EFB2_02965	0.68	-1.2
3,097,955	-		EFB2_02965	0.68	-2.9
3,097,955	-		EFB2_02965	0.68	-1.7
3,098,000	-		EFB2_02965	0.73	-0.0
3,098,129	+		EFB2_02965	0.88	-2.9
3,098,129	+		EFB2_02965	0.88	-2.4
3,098,130	-		EFB2_02965	0.88	-0.8
3,098,130	-		EFB2_02965	0.88	+1.1
3,098,145	+		EFB2_02965	0.90	-0.2
3,098,145	+		EFB2_02965	0.90	+0.3
3,098,146	-		EFB2_02965	0.90	-0.3
3,098,185	+				+1.2
3,098,185	+				+1.5
3,098,185	+				+0.7
3,098,185	+				-2.4
3,098,185	+				-2.6
3,098,185	+				-0.0
3,098,185	+				-0.3
3,098,185	+				-0.5
3,098,185	+				+1.0
3,098,185	+				+0.4
3,098,185	+				+0.0
3,098,185	+				-0.6
3,098,185	+				+1.0
3,098,185	+				-2.6
3,098,185	+				+0.2
3,098,185	+				+0.2
3,098,185	+				-1.1
3,098,185	+				+2.8
3,098,185	+				-0.8
3,098,185	+				+0.3
3,098,185	+				+0.8
3,098,185	+				+0.1
3,098,185	+				+0.7
3,098,185	+				+0.4
3,098,185	+				+0.4
3,098,185	+				+0.7
3,098,185	+				-0.3
3,098,185	+				-0.9
3,098,185	+				-1.2
3,098,185	+				-0.6
3,098,185	+				-0.5
3,098,185	+				-2.0
3,098,185	+				-1.8
3,098,186	-				+1.4
3,098,186	-				+1.3
3,098,186	-				-0.8
3,098,186	-				+0.4
3,098,186	-				+0.8
3,098,186	-				-1.7
3,098,186	-				-0.1
3,098,186	-				-2.0
3,098,186	-				+1.4
3,098,186	-				-1.4
3,098,186	-				+1.2
3,098,186	-				+0.0
3,098,186	-				-0.4
3,098,186	-				+1.5
3,098,186	-				+0.9
3,098,186	-				+2.6
3,098,186	-				+1.0
3,098,186	-				-0.5
3,098,186	-				-1.3
3,098,186	-				+3.4
3,098,186	-				+1.8
3,098,186	-				+1.1
3,098,186	-				-1.8
3,098,186	-				+0.3
3,098,186	-				+2.0
3,098,274	+				-0.4
3,098,274	+				+1.2
3,098,274	+				-0.7
3,098,274	+				+0.1
3,098,274	+				-0.8
3,098,274	+				+1.5
3,098,274	+				-1.3
3,098,275	-				+0.2
3,098,275	-				+1.0
3,098,275	-				+0.3
3,098,287	+				+0.8
3,098,307	-				-0.6
3,098,314	+				-0.4
3,098,314	+				+0.2
3,098,315	-				-0.6
3,098,315	-				-0.5
3,098,340	+				-2.1
3,098,340	+				+0.3
3,098,340	+				-2.0
3,098,340	+				-1.0
3,098,340	+				+0.1
3,098,340	+				+2.4
3,098,340	+				+0.0
3,098,340	+				-1.3
3,098,340	+				-1.4
3,098,340	+				-3.3
3,098,340	+				-0.0
3,098,340	+				+0.6
3,098,340	+				+1.0
3,098,340	+				-2.6
3,098,340	+				+0.3
3,098,340	+				-1.6
3,098,340	+				+0.9
3,098,340	+				-0.2
3,098,340	+				+0.4
3,098,340	+				+1.5
3,098,340	+				-0.6
3,098,340	+				+0.5
3,098,341	-				-0.6
3,098,341	-				-0.7
3,098,341	-				+0.8
3,098,341	-				-2.1
3,098,341	-				-1.0
3,098,341	-				-1.0
3,098,341	-				-2.7
3,098,341	-				+0.0
3,098,341	-				+0.7
3,098,341	-				-2.1
3,098,341	-				+1.0
3,098,341	-				+2.6
3,098,341	-				-0.6
3,098,341	-				-1.4
3,098,341	-				+2.8
3,098,341	-				-0.6
3,098,341	-				+0.5
3,098,341	-				-3.2
3,098,341	-				-1.6
3,098,341	-				-1.9
3,098,341	-				+0.9
3,098,341	-				-2.1
3,098,341	-				+0.0
3,098,341	-				-2.1
3,098,341	-				+1.1
3,098,341	-				-0.2
3,098,445	+		EFB2_02966	0.24	-0.7
3,098,445	+		EFB2_02966	0.24	-0.3
3,098,446	-		EFB2_02966	0.24	-0.9
3,098,446	-		EFB2_02966	0.24	-0.7
3,098,446	-		EFB2_02966	0.24	+0.1
3,098,476	-		EFB2_02966	0.33	-0.1
3,098,483	+		EFB2_02966	0.35	-1.8
3,098,483	+		EFB2_02966	0.35	+1.0
3,098,483	+		EFB2_02966	0.35	+0.2
3,098,624	+		EFB2_02966	0.76	-0.1
3,098,624	+		EFB2_02966	0.76	+0.9
3,098,625	-		EFB2_02966	0.76	-0.8
3,098,625	-		EFB2_02966	0.76	-1.6
3,098,625	-		EFB2_02966	0.76	+1.1
3,098,625	-		EFB2_02966	0.76	-2.2
3,098,625	-		EFB2_02966	0.76	+2.0
3,098,628	+		EFB2_02966	0.77	+1.4
3,098,628	+		EFB2_02966	0.77	+1.1
3,098,628	+		EFB2_02966	0.77	+1.7
3,098,628	+		EFB2_02966	0.77	-0.5
3,098,628	+		EFB2_02966	0.77	+0.9
3,098,628	+		EFB2_02966	0.77	-3.0
3,098,628	+		EFB2_02966	0.77	-2.8
3,098,628	+		EFB2_02966	0.77	+1.0
3,098,628	+		EFB2_02966	0.77	+0.8
3,098,628	+		EFB2_02966	0.77	-0.4
3,098,628	+		EFB2_02966	0.77	-0.8
3,098,628	+		EFB2_02966	0.77	-1.1
3,098,628	+		EFB2_02966	0.77	-2.6
3,098,628	+		EFB2_02966	0.77	+0.4
3,098,628	+		EFB2_02966	0.77	+2.4
3,098,628	+		EFB2_02966	0.77	+1.7
3,098,628	+		EFB2_02966	0.77	+0.2
3,098,629	-		EFB2_02966	0.77	+0.3
3,098,629	-		EFB2_02966	0.77	-1.1
3,098,629	-		EFB2_02966	0.77	-0.1
3,098,629	-		EFB2_02966	0.77	-0.3
3,098,629	-		EFB2_02966	0.77	-2.3
3,098,629	-		EFB2_02966	0.77	-0.3
3,098,629	-		EFB2_02966	0.77	+0.4
3,098,629	-		EFB2_02966	0.77	+0.1
3,098,629	-		EFB2_02966	0.77	-3.1
3,098,629	-		EFB2_02966	0.77	+0.9
3,098,629	-		EFB2_02966	0.77	-1.8
3,098,629	-		EFB2_02966	0.77	+0.4
3,098,629	-		EFB2_02966	0.77	+1.8
3,098,629	-		EFB2_02966	0.77	-1.4
3,098,629	-		EFB2_02966	0.77	+0.7
3,098,629	-		EFB2_02966	0.77	+0.4
3,098,629	-		EFB2_02966	0.77	-0.8
3,098,629	-		EFB2_02966	0.77	+4.3
3,098,659	-		EFB2_02966	0.86	+2.5
3,098,659	-		EFB2_02966	0.86	-0.2
3,098,767	-		EFB2_02967	0.62	-1.1
3,098,801	-				-0.1
3,098,801	-				-1.6
3,098,806	-				+0.6
3,098,806	-				-0.8
3,098,849	-				+0.3
3,098,853	+				+2.0
3,098,853	+				-0.0
3,098,858	+				-1.8
3,098,859	-				+0.5
3,098,872	+				+0.5
3,098,872	+				-0.3
3,098,872	+				+2.0
3,098,873	-				-1.0
3,098,873	-				-2.6
3,098,898	-				-1.2
3,098,905	+				+0.2
3,098,940	+				+1.0
3,098,941	-				+0.5
3,098,947	+				+0.5
3,098,947	+				+0.4
3,098,947	+				-2.0
3,098,947	+				-2.3
3,098,947	+				+0.4
3,098,947	+				-0.2
3,098,947	+				-1.3
3,098,947	+				+0.3
3,098,948	-				-2.9
3,098,948	-				+0.4
3,098,948	-				+0.4
3,098,948	-				+2.0
3,098,948	-				+0.5
3,098,962	+				-3.6
3,098,962	+				+0.0
3,098,966	+				-1.4
3,098,966	+				-0.8
3,098,966	+				+2.0
3,098,966	+				+1.4
3,098,966	+				+2.0
3,098,966	+				-1.6
3,098,967	-				+0.8
3,098,967	-				+0.2
3,098,967	-				+2.1
3,098,967	-				+0.3
3,098,967	-				+0.3
3,098,967	-				-0.1
3,098,967	-				+0.0
3,098,967	-				+1.6
3,098,967	-				+0.6
3,098,967	-				-0.4
3,098,974	+				+0.3
3,098,974	+				+0.3
3,098,974	+				-0.6
3,098,974	+				-0.6
3,098,975	-				+0.3
3,099,024	+		EFB2_02968	0.51	+0.7
3,099,024	+		EFB2_02968	0.51	-0.3
3,099,025	-		EFB2_02968	0.52	+0.2
3,099,025	-		EFB2_02968	0.52	-2.0
3,099,025	-		EFB2_02968	0.52	-1.2
3,099,025	-		EFB2_02968	0.52	-3.4
3,099,025	-		EFB2_02968	0.52	+0.3
3,099,025	-		EFB2_02968	0.52	+1.5
3,099,025	-		EFB2_02968	0.52	-0.3
3,099,073	+				+0.4
3,099,074	-				-0.2
3,099,077	-				-0.1
3,099,077	-				-0.1
3,099,082	+				-1.1
3,099,109	+				+1.0
3,099,110	-				-1.0
3,099,110	-				-2.1
3,099,110	-				-0.9
3,099,110	-				-0.8
3,099,110	-				-1.7
3,099,110	-				+1.2
3,099,110	-				+0.9
3,099,110	-				-2.5
3,099,112	+				-0.4
3,099,112	+				+0.7
3,099,112	+				+1.4
3,099,112	+				+0.2
3,099,112	+				+1.0
3,099,112	+				-1.8
3,099,112	+				-0.3
3,099,112	+				+2.6
3,099,113	-				-0.9
3,099,113	-				-0.4
3,099,113	-				-2.4
3,099,113	-				-0.2
3,099,113	-				+0.7
3,099,113	-				+0.4
3,099,113	-				+1.4
3,099,113	-				+0.9
3,099,113	-				-0.6
3,099,113	-				-0.8
3,099,113	-				+1.3
3,099,113	-				-2.2
3,099,132	-				+1.1
3,099,149	+				+1.0
3,099,150	-				+0.5
3,099,150	-				+0.3
3,099,164	+				+1.1
3,099,164	+				+0.3
3,099,164	+				-1.2
3,099,165	-				-1.3
3,099,186	+				+1.0
3,099,187	-				+0.6
3,099,196	+				-2.9
3,099,196	+				-3.4
3,099,197	-				-1.2
3,099,208	-				+0.9
3,099,208	-				+0.0
3,099,208	-				-2.0
3,099,211	+				-2.5
3,099,211	+				+0.0
3,099,211	+				+2.3
3,099,211	+				+1.9
3,099,211	+				+0.4
3,099,211	+				+1.0
3,099,211	+				-1.1
3,099,211	+				-0.3
3,099,212	-				+1.3
3,099,212	-				+1.7
3,099,212	-				-1.3
3,099,212	-				+1.1
3,099,212	-				-0.6
3,099,212	-				+2.0
3,099,212	-				-0.8
3,099,212	-				+0.9
3,099,212	-				+0.8
3,099,212	-				-1.3
3,099,212	-				-2.6
3,099,212	-				-0.7
3,099,212	-				-1.1
3,099,212	-				+0.1
3,099,212	-				-0.5
3,099,212	-				+0.6
3,099,212	-				-1.6
3,099,214	+				+0.8
3,099,214	+				-1.4
3,099,214	+				-2.7
3,099,215	-				+0.4
3,099,215	-				+0.0
3,099,215	-				+1.5
3,099,215	-				-3.8
3,099,217	+				+1.1
3,099,217	+				+1.5
3,099,218	-				-1.0
3,099,218	-				+0.8
3,099,218	-				+2.0
3,099,218	-				-0.5
3,099,218	-				-1.0
3,099,218	-				+1.0
3,099,218	-				-1.5
3,099,218	-				+0.4
3,099,221	+				-1.0
3,099,221	+				-1.1
3,099,221	+				-0.2
3,099,222	-				+0.1
3,099,222	-				-3.3
3,099,222	-				-1.3
3,099,222	-				+1.6
3,099,222	-				-2.0
3,099,259	+				-2.4
3,099,259	+				+0.4
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