Strain Fitness in Escherichia fergusonii Becca around EFB2_02693

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,849,949	+		EFB2_02692	0.11	-3.8
2,849,949	+		EFB2_02692	0.11	-0.7
2,849,949	+		EFB2_02692	0.11	-1.7
2,849,950	-		EFB2_02692	0.11	-1.8
2,849,950	-		EFB2_02692	0.11	+0.7
2,849,950	-		EFB2_02692	0.11	-0.5
2,849,950	-		EFB2_02692	0.11	-0.1
2,849,950	-		EFB2_02692	0.11	+0.5
2,849,950	-		EFB2_02692	0.11	-0.0
2,849,950	-		EFB2_02692	0.11	-0.9
2,849,950	-		EFB2_02692	0.11	-0.2
2,849,950	-		EFB2_02692	0.11	-0.5
2,849,950	-		EFB2_02692	0.11	-0.8
2,849,953	+		EFB2_02692	0.11	-2.2
2,849,953	+		EFB2_02692	0.11	+3.4
2,849,953	+		EFB2_02692	0.11	+0.6
2,849,954	-		EFB2_02692	0.11	-0.1
2,849,954	-		EFB2_02692	0.11	-0.5
2,849,954	-		EFB2_02692	0.11	+0.7
2,849,954	-		EFB2_02692	0.11	-1.3
2,850,015	+		EFB2_02692	0.18	-2.9
2,850,051	+		EFB2_02692	0.21	-2.9
2,850,052	-		EFB2_02692	0.22	-0.4
2,850,052	-		EFB2_02692	0.22	+4.8
2,850,052	-		EFB2_02692	0.22	+1.2
2,850,094	+		EFB2_02692	0.26	-3.0
2,850,095	-		EFB2_02692	0.26	+0.2
2,850,172	-		EFB2_02692	0.34	+2.0
2,850,234	+		EFB2_02692	0.41	-2.8
2,850,234	+		EFB2_02692	0.41	-1.1
2,850,235	-		EFB2_02692	0.41	-0.7
2,850,235	-		EFB2_02692	0.41	-1.2
2,850,235	-		EFB2_02692	0.41	+2.2
2,850,264	+		EFB2_02692	0.44	+0.0
2,850,265	-		EFB2_02692	0.44	-1.2
2,850,265	-		EFB2_02692	0.44	+0.4
2,850,265	-		EFB2_02692	0.44	-0.6
2,850,276	+		EFB2_02692	0.45	-0.1
2,850,280	+		EFB2_02692	0.46	+4.0
2,850,281	-		EFB2_02692	0.46	+0.7
2,850,281	-		EFB2_02692	0.46	-1.5
2,850,281	-		EFB2_02692	0.46	-1.4
2,850,281	-		EFB2_02692	0.46	+0.3
2,850,281	-		EFB2_02692	0.46	-0.9
2,850,281	-		EFB2_02692	0.46	+1.7
2,850,281	-		EFB2_02692	0.46	+3.4
2,850,281	-		EFB2_02692	0.46	-0.6
2,850,281	-		EFB2_02692	0.46	-2.9
2,850,281	-		EFB2_02692	0.46	+0.6
2,850,281	-		EFB2_02692	0.46	-0.9
2,850,281	-		EFB2_02692	0.46	+2.2
2,850,281	-		EFB2_02692	0.46	+1.9
2,850,281	-		EFB2_02692	0.46	-0.4
2,850,328	+		EFB2_02692	0.51	+1.6
2,850,329	-		EFB2_02692	0.51	+1.9
2,850,329	-		EFB2_02692	0.51	-0.0
2,850,329	-		EFB2_02692	0.51	+0.2
2,850,358	-		EFB2_02692	0.54	+0.3
2,850,358	-		EFB2_02692	0.54	+1.9
2,850,358	-		EFB2_02692	0.54	+1.4
2,850,358	-		EFB2_02692	0.54	-0.9
2,850,358	-		EFB2_02692	0.54	-1.7
2,850,382	-		EFB2_02692	0.57	+0.3
2,850,382	-		EFB2_02692	0.57	+1.5
2,850,388	+		EFB2_02692	0.57	+2.8
2,850,389	-		EFB2_02692	0.57	+0.5
2,850,389	-		EFB2_02692	0.57	+1.8
2,850,389	-		EFB2_02692	0.57	-1.2
2,850,389	-		EFB2_02692	0.57	+2.4
2,850,389	-		EFB2_02692	0.57	+1.8
2,850,402	+		EFB2_02692	0.59	+3.2
2,850,403	-		EFB2_02692	0.59	-0.5
2,850,403	-		EFB2_02692	0.59	-1.4
2,850,403	-		EFB2_02692	0.59	+2.2
2,850,407	-		EFB2_02692	0.59	-0.2
2,850,407	-		EFB2_02692	0.59	-0.9
2,850,447	-		EFB2_02692	0.63	+1.0
2,850,466	+		EFB2_02692	0.65	-1.5
2,850,467	-		EFB2_02692	0.66	-1.6
2,850,467	-		EFB2_02692	0.66	-0.7
2,850,541	+		EFB2_02692	0.73	+2.2
2,850,555	-		EFB2_02692	0.75	+1.6
2,850,605	+		EFB2_02692	0.80	-1.1
2,850,606	-		EFB2_02692	0.80	+0.9
2,850,606	-		EFB2_02692	0.80	+0.5
2,850,606	-		EFB2_02692	0.80	+3.0
2,850,606	-		EFB2_02692	0.80	-0.4
2,850,606	-		EFB2_02692	0.80	-2.4
2,850,682	-		EFB2_02692	0.88	+1.4
2,850,682	-		EFB2_02692	0.88	+0.5
2,850,682	-		EFB2_02692	0.88	-1.6
2,850,682	-		EFB2_02692	0.88	+0.2
2,850,682	-		EFB2_02692	0.88	-0.9
2,850,685	+		EFB2_02692	0.89	-1.2
2,850,686	-		EFB2_02692	0.89	+2.2
2,850,693	+		EFB2_02692	0.89	-2.4
2,850,694	-		EFB2_02692	0.90	-0.7
2,850,694	-		EFB2_02692	0.90	-0.3
2,850,694	-		EFB2_02692	0.90	-1.0
2,850,694	-		EFB2_02692	0.90	-1.7
2,850,694	-		EFB2_02692	0.90	-3.0
2,850,737	-				+0.6
2,850,754	+				-0.3
2,850,755	-				+0.2
2,850,786	+				-0.2
2,850,786	+				-0.2
2,850,787	-				-1.3
2,850,814	+				-2.2
2,850,814	+				+0.4
2,850,814	+				+1.4
2,850,814	+				+0.0
2,850,814	+				+1.2
2,850,814	+				+0.7
2,850,814	+				+2.4
2,850,815	-				+0.3
2,850,815	-				+0.5
2,850,815	-				-2.4
2,850,815	-				+0.6
2,850,815	-				-0.1
2,850,815	-				-1.1
2,850,815	-				-0.6
2,850,815	-				+0.2
2,850,815	-				+0.5
2,850,815	-				-0.5
2,850,815	-				-3.2
2,850,815	-				+0.1
2,850,815	-				-2.7
2,850,815	-				-0.9
2,850,815	-				+0.6
2,850,815	-				-0.8
2,850,815	-				-0.6
2,850,815	-				-1.5
2,850,815	-				-0.2
2,850,815	-				-3.3
2,850,815	-				-1.3
2,850,815	-				+0.1
2,850,815	-				-0.3
2,850,815	-				+1.1
2,850,815	-				-0.6
2,850,815	-				-0.8
2,850,821	-				-0.6
2,850,821	-				+0.6
2,850,821	-				-2.2
2,850,821	-				-1.5
2,850,835	+				+1.8
2,850,835	+				-2.1
2,850,836	-				+0.3
2,850,836	-				-0.2
2,850,843	+				+0.5
2,850,861	+				+0.0
2,850,861	+				+0.4
2,850,861	+				+2.5
2,850,861	+				+0.2
2,850,861	+				+2.2
2,850,861	+				-1.4
2,850,861	+				-0.7
2,850,861	+				-0.4
2,850,861	+				-2.2
2,850,862	-				-2.2
2,850,862	-				-1.2
2,850,862	-				+0.1
2,850,862	-				+0.5
2,850,862	-				-2.0
2,850,862	-				+0.1
2,850,889	+				+1.5
2,850,889	+				+0.1
2,850,889	+				+1.0
2,850,890	-				+1.2
2,850,890	-				+0.9
2,850,902	+				-0.1
2,850,903	+				+0.6
2,850,903	-				-1.1
2,850,903	-				-0.2
2,850,903	-				+1.0
2,850,904	+				+0.2
2,850,904	+				-3.3
2,850,904	+				-1.8
2,850,904	+				+0.8
2,850,904	+				-0.4
2,850,904	+				-2.4
2,850,904	+				+1.2
2,850,904	+				+0.9
2,850,905	-				-1.9
2,850,905	-				-0.8
2,850,905	-				-1.5
2,850,905	-				-0.5
2,850,905	-				-1.1
2,850,905	-				+0.8
2,850,905	-				-1.6
2,850,905	-				-2.9
2,850,905	-				+0.7
2,850,905	-				-0.0
2,850,905	-				+0.5
2,850,905	-				-1.7
2,850,905	-				+2.5
2,850,909	+				+1.2
2,850,909	+				+0.0
2,850,909	+				+0.4
2,850,909	+				+1.4
2,850,909	+				-0.4
2,850,909	+				+1.0
2,850,909	+				-0.1
2,850,909	+				+1.6
2,850,909	+				-0.2
2,850,909	+				+1.0
2,850,909	+				+0.6
2,850,909	+				+0.1
2,850,909	+				-1.2
2,850,909	+				+0.6
2,850,909	+				-1.9
2,850,909	+				+2.6
2,850,909	+				-1.8
2,850,909	+				+1.1
2,850,909	+				+0.4
2,850,909	+				-1.1
2,850,909	+				-0.8
2,850,909	+				-1.7
2,850,909	+				+1.6
2,850,909	+				+1.2
2,850,909	+				-1.5
2,850,909	+				-1.4
2,850,909	+				+0.5
2,850,909	+				-0.9
2,850,909	+				+1.3
2,850,909	+				+1.7
2,850,909	+				-2.2
2,850,909	+				+0.6
2,850,909	+				+0.3
2,850,909	+				-1.5
2,850,909	+				+0.4
2,850,909	+				+2.4
2,850,909	+				+0.6
2,850,909	+				-1.8
2,850,910	-				+1.3
2,850,910	-				-2.7
2,850,910	-				+0.7
2,850,910	-				-2.2
2,850,910	-				+2.0
2,850,910	-				+1.2
2,850,910	-				+2.9
2,850,910	-				+0.9
2,850,910	-				-1.6
2,850,910	-				+0.6
2,850,910	-				+0.1
2,850,910	-				-0.8
2,850,910	-				+2.1
2,850,910	-				+0.5
2,850,910	-				-2.4
2,850,910	-				+0.3
2,850,910	-				+0.9
2,850,910	-				-0.4
2,850,910	-				+0.3
2,850,910	-				-1.8
2,850,910	-				-0.8
2,850,910	-				-2.0
2,850,910	-				+0.6
2,850,910	-				-1.5
2,850,910	-				+0.2
2,850,910	-				-0.4
2,850,910	-				-1.3
2,850,910	-				+0.2
2,850,910	-				-2.1
2,850,910	-				-1.1
2,850,910	-				-2.6
2,850,910	-				+0.2
2,850,910	-				-3.7
2,850,910	-				+0.8
2,850,910	-				-0.7
2,850,910	-				+0.2
2,850,910	-				+0.1
2,850,910	-				-2.7
2,850,910	-				+1.1
2,850,910	-				+1.0
2,850,910	-				-1.9
2,850,910	-				+1.4
2,850,910	-				-2.8
2,850,910	-				+0.4
2,850,910	-				-0.9
2,850,923	+		EFB2_02693	0.12	-2.5
2,850,923	+		EFB2_02693	0.12	+2.0
2,850,923	+		EFB2_02693	0.12	+1.5
2,850,923	+		EFB2_02693	0.12	+3.2
2,850,923	+		EFB2_02693	0.12	-0.3
2,850,923	+		EFB2_02693	0.12	+0.4
2,850,923	+		EFB2_02693	0.12	+3.1
2,850,923	+		EFB2_02693	0.12	+1.3
2,850,923	+		EFB2_02693	0.12	+2.5
2,850,923	+		EFB2_02693	0.12	+1.7
2,850,923	+		EFB2_02693	0.12	-2.5
2,850,923	+		EFB2_02693	0.12	-0.1
2,850,923	+		EFB2_02693	0.12	-1.4
2,850,923	+		EFB2_02693	0.12	+1.7
2,850,923	+		EFB2_02693	0.12	+0.7
2,850,923	+		EFB2_02693	0.12	-1.1
2,850,923	+		EFB2_02693	0.12	+1.4
2,850,923	+		EFB2_02693	0.12	+1.2
2,850,923	+		EFB2_02693	0.12	+0.6
2,850,923	+		EFB2_02693	0.12	+1.6
2,850,923	+		EFB2_02693	0.12	+0.2
2,850,923	+		EFB2_02693	0.12	-0.9
2,850,923	+		EFB2_02693	0.12	-2.2
2,850,923	+		EFB2_02693	0.12	-0.9
2,850,923	+		EFB2_02693	0.12	-1.4
2,850,924	-		EFB2_02693	0.13	-1.4
2,850,924	-		EFB2_02693	0.13	+0.5
2,850,924	-		EFB2_02693	0.13	+1.1
2,850,924	-		EFB2_02693	0.13	-0.2
2,850,924	-		EFB2_02693	0.13	+1.2
2,850,924	-		EFB2_02693	0.13	-1.1
2,850,924	-		EFB2_02693	0.13	-0.6
2,850,924	-		EFB2_02693	0.13	-2.8
2,850,924	-		EFB2_02693	0.13	+0.0
2,850,924	-		EFB2_02693	0.13	+0.0
2,850,924	-		EFB2_02693	0.13	-3.1
2,850,924	-		EFB2_02693	0.13	+0.1
2,850,924	-		EFB2_02693	0.13	-0.5
2,850,924	-		EFB2_02693	0.13	-0.4
2,850,924	-		EFB2_02693	0.13	-0.0
2,850,924	-		EFB2_02693	0.13	-0.5
2,850,924	-		EFB2_02693	0.13	-1.8
2,850,924	-		EFB2_02693	0.13	-0.1
2,850,924	-		EFB2_02693	0.13	-0.5
2,850,924	-		EFB2_02693	0.13	-0.2
2,850,924	-		EFB2_02693	0.13	-1.1
2,850,924	-		EFB2_02693	0.13	-0.3
2,851,007	+		EFB2_02693	0.31	-0.4
2,851,007	+		EFB2_02693	0.31	+0.2
2,851,007	+		EFB2_02693	0.31	+0.2
2,851,008	-		EFB2_02693	0.31	+0.5
2,851,008	-		EFB2_02693	0.31	+0.3
2,851,011	+		EFB2_02693	0.32	-0.3
2,851,011	+		EFB2_02693	0.32	-0.6
2,851,011	+		EFB2_02693	0.32	-1.4
2,851,011	+		EFB2_02693	0.32	+0.0
2,851,011	+		EFB2_02693	0.32	+0.4
2,851,014	+		EFB2_02693	0.32	-0.9
2,851,014	+		EFB2_02693	0.32	+1.0
2,851,015	-		EFB2_02693	0.32	+1.2
2,851,050	+		EFB2_02693	0.40	+0.8
2,851,081	+		EFB2_02693	0.47	+0.3
2,851,081	+		EFB2_02693	0.47	-2.4
2,851,082	-		EFB2_02693	0.47	-0.9
2,851,082	-		EFB2_02693	0.47	-2.1
2,851,082	-		EFB2_02693	0.47	+0.1
2,851,104	+		EFB2_02693	0.52	+0.3
2,851,104	+		EFB2_02693	0.52	-0.9
2,851,104	+		EFB2_02693	0.52	+0.6
2,851,105	-		EFB2_02693	0.52	+0.8
2,851,105	-		EFB2_02693	0.52	-1.9
2,851,105	-		EFB2_02693	0.52	+1.8
2,851,105	-		EFB2_02693	0.52	-0.1
2,851,105	-		EFB2_02693	0.52	+0.4
2,851,135	+		EFB2_02693	0.59	-2.2
2,851,191	+		EFB2_02693	0.71	-0.5
2,851,191	+		EFB2_02693	0.71	-1.4
2,851,191	+		EFB2_02693	0.71	-2.8
2,851,191	+		EFB2_02693	0.71	-1.1
2,851,192	-		EFB2_02693	0.71	-1.9
2,851,232	+		EFB2_02693	0.80	+1.5
2,851,232	+		EFB2_02693	0.80	-1.9
2,851,232	+		EFB2_02693	0.80	+1.1
2,851,232	+		EFB2_02693	0.80	+0.7
2,851,232	+		EFB2_02693	0.80	+1.6
2,851,232	+		EFB2_02693	0.80	-0.3
2,851,232	+		EFB2_02693	0.80	-1.2
2,851,232	+		EFB2_02693	0.80	+2.2
2,851,232	+		EFB2_02693	0.80	+2.2
2,851,232	+		EFB2_02693	0.80	-1.6
2,851,232	+		EFB2_02693	0.80	+0.2
2,851,232	+		EFB2_02693	0.80	+0.9
2,851,233	-		EFB2_02693	0.80	-2.4
2,851,233	-		EFB2_02693	0.80	+1.7
2,851,233	-		EFB2_02693	0.80	+1.3
2,851,233	-		EFB2_02693	0.80	-1.2
2,851,233	-		EFB2_02693	0.80	+0.2
2,851,233	-		EFB2_02693	0.80	-2.6
2,851,235	+		EFB2_02693	0.80	-0.1
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2,852,108	+		EFB2_02694	0.87	+1.7
2,852,108	+		EFB2_02694	0.87	-3.9
2,852,108	+		EFB2_02694	0.87	+0.3
2,852,108	+		EFB2_02694	0.87	-2.7
2,852,108	+		EFB2_02694	0.87	-0.1
2,852,108	+		EFB2_02694	0.87	-2.4
2,852,108	+		EFB2_02694	0.87	-0.7
2,852,108	+		EFB2_02694	0.87	+0.6
2,852,108	+		EFB2_02694	0.87	-1.6
2,852,109	-		EFB2_02694	0.87	-2.6
2,852,109	-		EFB2_02694	0.87	-2.7
2,852,109	-		EFB2_02694	0.87	-1.6
2,852,109	-		EFB2_02694	0.87	+0.2
2,852,146	+				-3.0
2,852,146	+				+1.0
2,852,146	+				-2.5
2,852,147	-				-0.4
2,852,147	-				-0.0
2,852,147	-				+1.6
2,852,147	-				-1.6
2,852,147	-				-0.1
2,852,147	-				-0.9
2,852,158	+				-2.5
2,852,159	-				-0.9
2,852,160	+				-0.3
2,852,160	+				+1.9
2,852,160	+				-1.8
2,852,160	+				+2.6
2,852,160	+				-0.5
2,852,160	+				-0.1
2,852,160	+				+0.8
2,852,160	+				+0.1
2,852,161	-				-0.0
2,852,161	-				+1.0
2,852,161	-				-0.1
2,852,167	+				+1.2
2,852,167	+				+0.5
2,852,167	+				+2.4
2,852,168	-				+0.2
2,852,207	+				+1.8
2,852,208	-				-1.2
2,852,231	-				-0.6
2,852,238	+				-1.5
2,852,238	+				+1.0
2,852,238	+				+0.4
2,852,238	+				-1.7
2,852,239	-				-0.8
2,852,292	+				-0.3
2,852,292	+				-1.9
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2,852,293	-				+1.9
2,852,293	-				-1.2
2,852,293	-				+0.1
2,852,293	-				-0.4
2,852,300	+				+0.4
2,852,300	+				+0.9
2,852,300	+				+1.2
2,852,320	+				-1.5
2,852,321	-				-0.1
2,852,321	-				-0.9