Strain Fitness in Escherichia fergusonii Becca around EFB2_02692

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,848,869	-		EFB2_02691	0.12	-1.6
2,848,900	-		EFB2_02691	0.15	-1.4
2,848,954	+		EFB2_02691	0.21	-1.2
2,848,955	-		EFB2_02691	0.21	+2.0
2,848,958	-		EFB2_02691	0.21	+1.2
2,848,958	-		EFB2_02691	0.21	+0.6
2,848,965	+		EFB2_02691	0.22	+0.6
2,848,966	-		EFB2_02691	0.22	+2.2
2,848,966	-		EFB2_02691	0.22	-0.3
2,848,966	-		EFB2_02691	0.22	+0.2
2,848,966	-		EFB2_02691	0.22	-1.2
2,848,966	-		EFB2_02691	0.22	+0.2
2,848,966	-		EFB2_02691	0.22	-0.9
2,848,966	-		EFB2_02691	0.22	+0.4
2,848,966	-		EFB2_02691	0.22	-1.9
2,848,966	-		EFB2_02691	0.22	-0.1
2,848,966	-		EFB2_02691	0.22	-0.9
2,848,966	-		EFB2_02691	0.22	-1.9
2,849,004	+		EFB2_02691	0.26	-0.6
2,849,005	-		EFB2_02691	0.26	+0.6
2,849,005	-		EFB2_02691	0.26	-2.0
2,849,013	+		EFB2_02691	0.27	+3.4
2,849,077	-		EFB2_02691	0.33	+2.0
2,849,077	-		EFB2_02691	0.33	+1.7
2,849,079	+		EFB2_02691	0.33	-1.5
2,849,101	-		EFB2_02691	0.35	-0.6
2,849,101	-		EFB2_02691	0.35	-0.8
2,849,119	-		EFB2_02691	0.37	+0.1
2,849,127	-		EFB2_02691	0.38	+2.2
2,849,127	-		EFB2_02691	0.38	+0.6
2,849,127	-		EFB2_02691	0.38	+5.0
2,849,223	+		EFB2_02691	0.47	-2.0
2,849,223	+		EFB2_02691	0.47	+0.2
2,849,223	+		EFB2_02691	0.47	+0.6
2,849,223	+		EFB2_02691	0.47	-2.6
2,849,224	-		EFB2_02691	0.47	+2.2
2,849,224	-		EFB2_02691	0.47	+1.9
2,849,224	-		EFB2_02691	0.47	-1.4
2,849,224	-		EFB2_02691	0.47	+1.2
2,849,234	-		EFB2_02691	0.48	+1.0
2,849,234	-		EFB2_02691	0.48	-0.9
2,849,238	-		EFB2_02691	0.49	+0.3
2,849,278	-		EFB2_02691	0.53	-2.4
2,849,278	-		EFB2_02691	0.53	-2.1
2,849,278	-		EFB2_02691	0.53	+0.2
2,849,289	+		EFB2_02691	0.54	-1.8
2,849,290	-		EFB2_02691	0.54	+1.1
2,849,290	-		EFB2_02691	0.54	+1.4
2,849,290	-		EFB2_02691	0.54	-0.8
2,849,369	+		EFB2_02691	0.62	+2.8
2,849,369	+		EFB2_02691	0.62	+0.6
2,849,369	+		EFB2_02691	0.62	+0.6
2,849,369	+		EFB2_02691	0.62	+0.6
2,849,370	-		EFB2_02691	0.62	-2.1
2,849,370	-		EFB2_02691	0.62	+0.6
2,849,463	+		EFB2_02691	0.71	-0.9
2,849,477	+		EFB2_02691	0.72	-1.4
2,849,478	-		EFB2_02691	0.72	+0.5
2,849,503	-		EFB2_02691	0.75	+1.4
2,849,503	-		EFB2_02691	0.75	-0.0
2,849,538	+		EFB2_02691	0.78	-1.5
2,849,538	+		EFB2_02691	0.78	-2.2
2,849,538	+		EFB2_02691	0.78	-0.6
2,849,538	+		EFB2_02691	0.78	+2.2
2,849,538	+		EFB2_02691	0.78	-1.1
2,849,539	-		EFB2_02691	0.79	-0.8
2,849,539	-		EFB2_02691	0.79	-0.8
2,849,539	-		EFB2_02691	0.79	+1.6
2,849,539	-		EFB2_02691	0.79	+0.1
2,849,539	-		EFB2_02691	0.79	+0.6
2,849,539	-		EFB2_02691	0.79	+0.4
2,849,539	-		EFB2_02691	0.79	-1.2
2,849,539	-		EFB2_02691	0.79	+2.6
2,849,539	-		EFB2_02691	0.79	+2.0
2,849,539	-		EFB2_02691	0.79	+0.6
2,849,539	-		EFB2_02691	0.79	-1.5
2,849,539	-		EFB2_02691	0.79	-2.5
2,849,539	-		EFB2_02691	0.79	+1.9
2,849,539	-		EFB2_02691	0.79	-0.4
2,849,539	-		EFB2_02691	0.79	-1.2
2,849,539	-		EFB2_02691	0.79	+1.8
2,849,540	+		EFB2_02691	0.79	+1.9
2,849,541	-		EFB2_02691	0.79	-1.2
2,849,541	-		EFB2_02691	0.79	+1.8
2,849,555	+		EFB2_02691	0.80	+3.5
2,849,556	-		EFB2_02691	0.80	+0.2
2,849,589	+		EFB2_02691	0.83	-0.6
2,849,589	+		EFB2_02691	0.83	+0.4
2,849,589	+		EFB2_02691	0.83	-0.1
2,849,589	+		EFB2_02691	0.83	-0.6
2,849,589	+		EFB2_02691	0.83	-1.9
2,849,590	-		EFB2_02691	0.84	+1.7
2,849,590	-		EFB2_02691	0.84	-0.1
2,849,590	-		EFB2_02691	0.84	+1.6
2,849,590	-		EFB2_02691	0.84	-0.6
2,849,590	-		EFB2_02691	0.84	+0.4
2,849,590	-		EFB2_02691	0.84	+1.2
2,849,590	-		EFB2_02691	0.84	-0.6
2,849,590	-		EFB2_02691	0.84	+1.2
2,849,590	-		EFB2_02691	0.84	+2.2
2,849,590	-		EFB2_02691	0.84	+0.6
2,849,590	-		EFB2_02691	0.84	-1.7
2,849,590	-		EFB2_02691	0.84	-2.1
2,849,590	-		EFB2_02691	0.84	-0.7
2,849,590	-		EFB2_02691	0.84	+1.2
2,849,590	-		EFB2_02691	0.84	+1.2
2,849,590	-		EFB2_02691	0.84	+1.4
2,849,590	-		EFB2_02691	0.84	-1.7
2,849,590	-		EFB2_02691	0.84	-2.2
2,849,652	+		EFB2_02691	0.90	-0.6
2,849,653	-		EFB2_02691	0.90	+0.5
2,849,704	-				-2.2
2,849,704	-				-0.6
2,849,704	-				+1.3
2,849,785	+				-0.8
2,849,786	-				-1.1
2,849,796	+				+3.4
2,849,797	-				-1.0
2,849,797	-				-2.0
2,849,806	+				+2.4
2,849,806	+				-2.1
2,849,806	+				+1.9
2,849,806	+				-1.9
2,849,806	+				-0.4
2,849,806	+				-3.1
2,849,806	+				-0.1
2,849,806	+				+0.2
2,849,807	-				-1.9
2,849,807	-				+0.4
2,849,807	-				+0.1
2,849,807	-				+0.3
2,849,807	-				-3.2
2,849,807	-				-0.8
2,849,807	-				-1.2
2,849,807	-				-1.3
2,849,807	-				-0.2
2,849,821	+				+5.8
2,849,822	-				+0.2
2,849,822	-				-0.4
2,849,822	-				+0.2
2,849,822	-				+1.7
2,849,822	-				-0.9
2,849,826	+				+0.8
2,849,826	+				+1.8
2,849,826	+				+2.2
2,849,826	+				-0.8
2,849,826	+				+2.7
2,849,826	+				-1.1
2,849,827	-				-3.4
2,849,827	-				+1.7
2,849,827	-				+0.4
2,849,827	-				+0.8
2,849,827	-				+0.8
2,849,827	-				-0.7
2,849,827	-				+1.0
2,849,827	-				-1.4
2,849,827	-				-1.9
2,849,827	-				-0.2
2,849,832	+				+2.8
2,849,832	+				+0.5
2,849,832	+				+0.1
2,849,832	+				+1.5
2,849,832	+				-0.4
2,849,833	-				+0.0
2,849,833	-				-2.4
2,849,833	-				-3.4
2,849,833	-				+0.8
2,849,833	-				-0.8
2,849,833	-				+0.2
2,849,833	-				-0.1
2,849,833	-				+0.9
2,849,833	-				-0.1
2,849,863	+				-0.6
2,849,863	+				+0.8
2,849,863	+				-1.8
2,849,864	-				+2.4
2,849,949	+		EFB2_02692	0.11	-3.8
2,849,949	+		EFB2_02692	0.11	-0.7
2,849,949	+		EFB2_02692	0.11	-1.7
2,849,950	-		EFB2_02692	0.11	-1.8
2,849,950	-		EFB2_02692	0.11	+0.7
2,849,950	-		EFB2_02692	0.11	-0.5
2,849,950	-		EFB2_02692	0.11	-0.1
2,849,950	-		EFB2_02692	0.11	+0.5
2,849,950	-		EFB2_02692	0.11	-0.0
2,849,950	-		EFB2_02692	0.11	-0.9
2,849,950	-		EFB2_02692	0.11	-0.2
2,849,950	-		EFB2_02692	0.11	-0.5
2,849,950	-		EFB2_02692	0.11	-0.8
2,849,953	+		EFB2_02692	0.11	-2.2
2,849,953	+		EFB2_02692	0.11	+3.4
2,849,953	+		EFB2_02692	0.11	+0.6
2,849,954	-		EFB2_02692	0.11	-0.1
2,849,954	-		EFB2_02692	0.11	-0.5
2,849,954	-		EFB2_02692	0.11	+0.7
2,849,954	-		EFB2_02692	0.11	-1.3
2,850,015	+		EFB2_02692	0.18	-2.9
2,850,051	+		EFB2_02692	0.21	-2.9
2,850,052	-		EFB2_02692	0.22	-0.4
2,850,052	-		EFB2_02692	0.22	+4.8
2,850,052	-		EFB2_02692	0.22	+1.2
2,850,094	+		EFB2_02692	0.26	-3.0
2,850,095	-		EFB2_02692	0.26	+0.2
2,850,172	-		EFB2_02692	0.34	+2.0
2,850,234	+		EFB2_02692	0.41	-2.8
2,850,234	+		EFB2_02692	0.41	-1.1
2,850,235	-		EFB2_02692	0.41	-0.7
2,850,235	-		EFB2_02692	0.41	-1.2
2,850,235	-		EFB2_02692	0.41	+2.2
2,850,264	+		EFB2_02692	0.44	+0.0
2,850,265	-		EFB2_02692	0.44	-1.2
2,850,265	-		EFB2_02692	0.44	+0.4
2,850,265	-		EFB2_02692	0.44	-0.6
2,850,276	+		EFB2_02692	0.45	-0.1
2,850,280	+		EFB2_02692	0.46	+4.0
2,850,281	-		EFB2_02692	0.46	+0.7
2,850,281	-		EFB2_02692	0.46	-1.5
2,850,281	-		EFB2_02692	0.46	-1.4
2,850,281	-		EFB2_02692	0.46	+0.3
2,850,281	-		EFB2_02692	0.46	-0.9
2,850,281	-		EFB2_02692	0.46	+1.7
2,850,281	-		EFB2_02692	0.46	+3.4
2,850,281	-		EFB2_02692	0.46	-0.6
2,850,281	-		EFB2_02692	0.46	-2.9
2,850,281	-		EFB2_02692	0.46	+0.6
2,850,281	-		EFB2_02692	0.46	-0.9
2,850,281	-		EFB2_02692	0.46	+2.2
2,850,281	-		EFB2_02692	0.46	+1.9
2,850,281	-		EFB2_02692	0.46	-0.4
2,850,328	+		EFB2_02692	0.51	+1.6
2,850,329	-		EFB2_02692	0.51	+1.9
2,850,329	-		EFB2_02692	0.51	-0.0
2,850,329	-		EFB2_02692	0.51	+0.2
2,850,358	-		EFB2_02692	0.54	+0.3
2,850,358	-		EFB2_02692	0.54	+1.9
2,850,358	-		EFB2_02692	0.54	+1.4
2,850,358	-		EFB2_02692	0.54	-0.9
2,850,358	-		EFB2_02692	0.54	-1.7
2,850,382	-		EFB2_02692	0.57	+0.3
2,850,382	-		EFB2_02692	0.57	+1.5
2,850,388	+		EFB2_02692	0.57	+2.8
2,850,389	-		EFB2_02692	0.57	+0.5
2,850,389	-		EFB2_02692	0.57	+1.8
2,850,389	-		EFB2_02692	0.57	-1.2
2,850,389	-		EFB2_02692	0.57	+2.4
2,850,389	-		EFB2_02692	0.57	+1.8
2,850,402	+		EFB2_02692	0.59	+3.2
2,850,403	-		EFB2_02692	0.59	-0.5
2,850,403	-		EFB2_02692	0.59	-1.4
2,850,403	-		EFB2_02692	0.59	+2.2
2,850,407	-		EFB2_02692	0.59	-0.2
2,850,407	-		EFB2_02692	0.59	-0.9
2,850,447	-		EFB2_02692	0.63	+1.0
2,850,466	+		EFB2_02692	0.65	-1.5
2,850,467	-		EFB2_02692	0.66	-1.6
2,850,467	-		EFB2_02692	0.66	-0.7
2,850,541	+		EFB2_02692	0.73	+2.2
2,850,555	-		EFB2_02692	0.75	+1.6
2,850,605	+		EFB2_02692	0.80	-1.1
2,850,606	-		EFB2_02692	0.80	+0.9
2,850,606	-		EFB2_02692	0.80	+0.5
2,850,606	-		EFB2_02692	0.80	+3.0
2,850,606	-		EFB2_02692	0.80	-0.4
2,850,606	-		EFB2_02692	0.80	-2.4
2,850,682	-		EFB2_02692	0.88	+1.4
2,850,682	-		EFB2_02692	0.88	+0.5
2,850,682	-		EFB2_02692	0.88	-1.6
2,850,682	-		EFB2_02692	0.88	+0.2
2,850,682	-		EFB2_02692	0.88	-0.9
2,850,685	+		EFB2_02692	0.89	-1.2
2,850,686	-		EFB2_02692	0.89	+2.2
2,850,693	+		EFB2_02692	0.89	-2.4
2,850,694	-		EFB2_02692	0.90	-0.7
2,850,694	-		EFB2_02692	0.90	-0.3
2,850,694	-		EFB2_02692	0.90	-1.0
2,850,694	-		EFB2_02692	0.90	-1.7
2,850,694	-		EFB2_02692	0.90	-3.0
2,850,737	-				+0.6
2,850,754	+				-0.3
2,850,755	-				+0.2
2,850,786	+				-0.2
2,850,786	+				-0.2
2,850,787	-				-1.3
2,850,814	+				-2.2
2,850,814	+				+0.4
2,850,814	+				+1.4
2,850,814	+				+0.0
2,850,814	+				+1.2
2,850,814	+				+0.7
2,850,814	+				+2.4
2,850,815	-				+0.3
2,850,815	-				+0.5
2,850,815	-				-2.4
2,850,815	-				+0.6
2,850,815	-				-0.1
2,850,815	-				-1.1
2,850,815	-				-0.6
2,850,815	-				+0.2
2,850,815	-				+0.5
2,850,815	-				-0.5
2,850,815	-				-3.2
2,850,815	-				+0.1
2,850,815	-				-2.7
2,850,815	-				-0.9
2,850,815	-				+0.6
2,850,815	-				-0.8
2,850,815	-				-0.6
2,850,815	-				-1.5
2,850,815	-				-0.2
2,850,815	-				-3.3
2,850,815	-				-1.3
2,850,815	-				+0.1
2,850,815	-				-0.3
2,850,815	-				+1.1
2,850,815	-				-0.6
2,850,815	-				-0.8
2,850,821	-				-0.6
2,850,821	-				+0.6
2,850,821	-				-2.2
2,850,821	-				-1.5
2,850,835	+				+1.8
2,850,835	+				-2.1
2,850,836	-				+0.3
2,850,836	-				-0.2
2,850,843	+				+0.5
2,850,861	+				+0.0
2,850,861	+				+0.4
2,850,861	+				+2.5
2,850,861	+				+0.2
2,850,861	+				+2.2
2,850,861	+				-1.4
2,850,861	+				-0.7
2,850,861	+				-0.4
2,850,861	+				-2.2
2,850,862	-				-2.2
2,850,862	-				-1.2
2,850,862	-				+0.1
2,850,862	-				+0.5
2,850,862	-				-2.0
2,850,862	-				+0.1
2,850,889	+				+1.5
2,850,889	+				+0.1
2,850,889	+				+1.0
2,850,890	-				+1.2
2,850,890	-				+0.9
2,850,902	+				-0.1
2,850,903	+				+0.6
2,850,903	-				-1.1
2,850,903	-				-0.2
2,850,903	-				+1.0
2,850,904	+				+0.2
2,850,904	+				-3.3
2,850,904	+				-1.8
2,850,904	+				+0.8
2,850,904	+				-0.4
2,850,904	+				-2.4
2,850,904	+				+1.2
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2,851,745	-		EFB2_02694	0.44	-0.4
2,851,745	-		EFB2_02694	0.44	+1.2
2,851,745	-		EFB2_02694	0.44	-1.8
2,851,769	+		EFB2_02694	0.47	-0.6
2,851,770	-		EFB2_02694	0.47	-0.4
2,851,770	-		EFB2_02694	0.47	+3.6
2,851,770	-		EFB2_02694	0.47	+0.6
2,851,786	+		EFB2_02694	0.49	-0.3