Strain Fitness in Escherichia fergusonii Becca around EFB2_02632

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,782,559	-		EFB2_02631	0.16	-1.2
2,782,569	+		EFB2_02631	0.17	+0.7
2,782,569	+		EFB2_02631	0.17	+0.3
2,782,569	+		EFB2_02631	0.17	-2.5
2,782,570	-		EFB2_02631	0.17	+0.7
2,782,654	+		EFB2_02631	0.24	+0.9
2,782,655	-		EFB2_02631	0.24	+1.5
2,782,655	-		EFB2_02631	0.24	-0.3
2,782,655	-		EFB2_02631	0.24	-2.5
2,782,655	-		EFB2_02631	0.24	-1.2
2,782,655	-		EFB2_02631	0.24	+0.8
2,782,655	-		EFB2_02631	0.24	-0.0
2,782,655	-		EFB2_02631	0.24	-0.6
2,782,666	+		EFB2_02631	0.25	-2.0
2,782,667	-		EFB2_02631	0.25	-2.4
2,782,667	-		EFB2_02631	0.25	+0.6
2,782,667	-		EFB2_02631	0.25	+0.7
2,782,699	+		EFB2_02631	0.28	+0.6
2,782,700	-		EFB2_02631	0.28	+2.8
2,782,773	+		EFB2_02631	0.34	+0.7
2,782,773	+		EFB2_02631	0.34	-1.4
2,782,773	+		EFB2_02631	0.34	+0.1
2,782,773	+		EFB2_02631	0.34	+1.1
2,782,773	+		EFB2_02631	0.34	-0.5
2,782,773	+		EFB2_02631	0.34	-1.0
2,782,774	-		EFB2_02631	0.34	-0.2
2,782,774	-		EFB2_02631	0.34	-1.7
2,782,774	-		EFB2_02631	0.34	-1.3
2,782,774	-		EFB2_02631	0.34	+0.7
2,782,774	-		EFB2_02631	0.34	+0.3
2,782,774	-		EFB2_02631	0.34	+1.6
2,782,788	+		EFB2_02631	0.35	+1.3
2,782,806	+		EFB2_02631	0.37	-1.2
2,782,807	-		EFB2_02631	0.37	-1.9
2,782,821	+		EFB2_02631	0.38	-0.2
2,782,863	+		EFB2_02631	0.42	-0.3
2,782,863	+		EFB2_02631	0.42	+1.5
2,782,863	+		EFB2_02631	0.42	-2.1
2,782,863	+		EFB2_02631	0.42	-1.5
2,782,864	-		EFB2_02631	0.42	-2.1
2,782,864	-		EFB2_02631	0.42	+2.1
2,782,864	-		EFB2_02631	0.42	-0.6
2,782,865	+		EFB2_02631	0.42	-1.1
2,782,865	+		EFB2_02631	0.42	+2.4
2,782,865	+		EFB2_02631	0.42	-0.5
2,782,865	+		EFB2_02631	0.42	-1.5
2,782,865	+		EFB2_02631	0.42	-1.3
2,782,865	+		EFB2_02631	0.42	+0.9
2,782,865	+		EFB2_02631	0.42	+0.1
2,782,865	+		EFB2_02631	0.42	-0.7
2,782,865	+		EFB2_02631	0.42	+0.9
2,782,865	+		EFB2_02631	0.42	-0.9
2,782,866	-		EFB2_02631	0.42	-1.1
2,782,866	-		EFB2_02631	0.42	+1.3
2,782,866	-		EFB2_02631	0.42	+0.4
2,782,866	-		EFB2_02631	0.42	-0.4
2,782,866	-		EFB2_02631	0.42	-1.4
2,782,866	-		EFB2_02631	0.42	+0.0
2,782,866	-		EFB2_02631	0.42	+0.3
2,782,866	-		EFB2_02631	0.42	-2.9
2,782,866	-		EFB2_02631	0.42	+0.3
2,782,866	-		EFB2_02631	0.42	+1.6
2,782,866	-		EFB2_02631	0.42	+0.5
2,782,866	-		EFB2_02631	0.42	+0.8
2,782,866	-		EFB2_02631	0.42	+0.2
2,782,866	-		EFB2_02631	0.42	-0.9
2,782,866	-		EFB2_02631	0.42	+1.3
2,782,866	-		EFB2_02631	0.42	+1.9
2,782,866	-		EFB2_02631	0.42	+0.9
2,782,888	-		EFB2_02631	0.44	-0.8
2,782,888	-		EFB2_02631	0.44	+2.3
2,782,888	-		EFB2_02631	0.44	+1.3
2,782,951	+		EFB2_02631	0.49	-1.3
2,782,951	+		EFB2_02631	0.49	-2.5
2,782,951	+		EFB2_02631	0.49	+2.3
2,782,951	+		EFB2_02631	0.49	+1.6
2,782,952	-		EFB2_02631	0.50	-1.6
2,782,952	-		EFB2_02631	0.50	+1.1
2,782,952	-		EFB2_02631	0.50	-0.1
2,782,952	-		EFB2_02631	0.50	+1.9
2,782,952	-		EFB2_02631	0.50	+1.0
2,782,952	-		EFB2_02631	0.50	-2.3
2,782,952	-		EFB2_02631	0.50	+0.8
2,782,995	+		EFB2_02631	0.53	+2.0
2,782,995	+		EFB2_02631	0.53	-0.1
2,782,995	+		EFB2_02631	0.53	+0.8
2,782,995	+		EFB2_02631	0.53	-0.4
2,782,995	+		EFB2_02631	0.53	-0.3
2,782,996	-		EFB2_02631	0.53	+1.7
2,782,996	-		EFB2_02631	0.53	-1.5
2,782,996	-		EFB2_02631	0.53	-0.4
2,782,996	-		EFB2_02631	0.53	-0.9
2,782,999	+		EFB2_02631	0.54	-0.7
2,783,020	+		EFB2_02631	0.55	-1.2
2,783,020	+		EFB2_02631	0.55	+0.4
2,783,020	+		EFB2_02631	0.55	-1.8
2,783,020	+		EFB2_02631	0.55	+1.1
2,783,020	+		EFB2_02631	0.55	-1.5
2,783,021	-		EFB2_02631	0.55	-1.5
2,783,021	-		EFB2_02631	0.55	-0.7
2,783,021	-		EFB2_02631	0.55	+2.5
2,783,021	-		EFB2_02631	0.55	+0.5
2,783,021	-		EFB2_02631	0.55	+2.2
2,783,021	-		EFB2_02631	0.55	-2.7
2,783,021	-		EFB2_02631	0.55	+1.0
2,783,029	-		EFB2_02631	0.56	-0.5
2,783,082	-		EFB2_02631	0.61	+2.9
2,783,131	+		EFB2_02631	0.65	+0.8
2,783,132	-		EFB2_02631	0.65	-2.5
2,783,168	+		EFB2_02631	0.68	+2.7
2,783,169	-		EFB2_02631	0.68	+1.1
2,783,169	-		EFB2_02631	0.68	+2.5
2,783,169	-		EFB2_02631	0.68	+0.8
2,783,169	-		EFB2_02631	0.68	+1.8
2,783,169	-		EFB2_02631	0.68	-1.1
2,783,169	-		EFB2_02631	0.68	-0.2
2,783,185	-		EFB2_02631	0.70	+1.2
2,783,185	-		EFB2_02631	0.70	-0.0
2,783,230	-		EFB2_02631	0.73	-0.9
2,783,252	+		EFB2_02631	0.75	-1.6
2,783,253	-		EFB2_02631	0.75	-2.0
2,783,256	+		EFB2_02631	0.76	+1.8
2,783,256	+		EFB2_02631	0.76	+0.1
2,783,256	+		EFB2_02631	0.76	-0.1
2,783,256	+		EFB2_02631	0.76	-0.1
2,783,256	+		EFB2_02631	0.76	-0.2
2,783,256	+		EFB2_02631	0.76	+0.7
2,783,256	+		EFB2_02631	0.76	-0.9
2,783,256	+		EFB2_02631	0.76	-1.7
2,783,256	+		EFB2_02631	0.76	+1.0
2,783,256	+		EFB2_02631	0.76	+0.4
2,783,257	-		EFB2_02631	0.76	+2.3
2,783,257	-		EFB2_02631	0.76	+0.5
2,783,257	-		EFB2_02631	0.76	+1.3
2,783,257	-		EFB2_02631	0.76	-1.1
2,783,257	-		EFB2_02631	0.76	+0.9
2,783,257	-		EFB2_02631	0.76	+0.2
2,783,293	-		EFB2_02631	0.79	-2.5
2,783,299	+		EFB2_02631	0.79	-0.9
2,783,299	+		EFB2_02631	0.79	+1.7
2,783,299	+		EFB2_02631	0.79	+0.3
2,783,300	-		EFB2_02631	0.79	-0.1
2,783,300	-		EFB2_02631	0.79	-0.5
2,783,315	-		EFB2_02631	0.81	+2.0
2,783,333	-		EFB2_02631	0.82	-1.0
2,783,356	+		EFB2_02631	0.84	+1.6
2,783,356	+		EFB2_02631	0.84	+0.4
2,783,356	+		EFB2_02631	0.84	+2.1
2,783,356	+		EFB2_02631	0.84	-2.4
2,783,356	+		EFB2_02631	0.84	+1.1
2,783,357	-		EFB2_02631	0.84	-1.7
2,783,357	-		EFB2_02631	0.84	+1.9
2,783,357	-		EFB2_02631	0.84	+0.4
2,783,357	-		EFB2_02631	0.84	-1.6
2,783,401	+		EFB2_02631	0.88	+1.6
2,783,401	+		EFB2_02631	0.88	-1.5
2,783,401	+		EFB2_02631	0.88	+0.5
2,783,401	+		EFB2_02631	0.88	+2.3
2,783,401	+		EFB2_02631	0.88	-0.9
2,783,402	-		EFB2_02631	0.88	+0.4
2,783,411	-		EFB2_02631	0.89	+2.3
2,783,462	+				+1.3
2,783,463	-				-0.3
2,783,463	-				-0.3
2,783,463	-				+1.0
2,783,473	-				-1.3
2,783,495	-				-1.4
2,783,495	-				-0.1
2,783,495	-				+1.8
2,783,533	-				+1.7
2,783,538	+				+1.4
2,783,538	+				-1.1
2,783,538	+				-0.5
2,783,539	-				-2.1
2,783,539	-				+0.4
2,783,541	+				+0.9
2,783,541	+				-0.5
2,783,541	+				-0.2
2,783,541	+				-0.7
2,783,541	+				+0.3
2,783,542	-				-1.2
2,783,542	-				+0.4
2,783,542	-				+1.3
2,783,542	-				+1.1
2,783,548	+				+2.7
2,783,549	-				+1.4
2,783,549	-				+1.3
2,783,680	+				-1.1
2,783,742	-		EFB2_02632	0.14	-0.9
2,783,742	-		EFB2_02632	0.14	-0.1
2,783,746	+		EFB2_02632	0.14	-2.9
2,783,746	+		EFB2_02632	0.14	-0.9
2,783,746	+		EFB2_02632	0.14	-3.6
2,783,746	+		EFB2_02632	0.14	-1.8
2,783,747	-		EFB2_02632	0.15	-0.9
2,783,747	-		EFB2_02632	0.15	-1.8
2,783,747	-		EFB2_02632	0.15	-1.8
2,783,747	-		EFB2_02632	0.15	-0.2
2,783,747	-		EFB2_02632	0.15	-0.5
2,783,813	+		EFB2_02632	0.19	+0.8
2,783,813	+		EFB2_02632	0.19	+0.3
2,783,813	+		EFB2_02632	0.19	+0.4
2,783,813	+		EFB2_02632	0.19	-1.8
2,783,813	+		EFB2_02632	0.19	+1.4
2,783,813	+		EFB2_02632	0.19	-0.4
2,783,813	+		EFB2_02632	0.19	-0.7
2,783,813	+		EFB2_02632	0.19	-1.3
2,783,813	+		EFB2_02632	0.19	+1.5
2,783,813	+		EFB2_02632	0.19	-2.4
2,783,814	-		EFB2_02632	0.19	+1.2
2,783,814	-		EFB2_02632	0.19	-0.4
2,783,814	-		EFB2_02632	0.19	-0.3
2,783,814	-		EFB2_02632	0.19	-2.9
2,783,814	-		EFB2_02632	0.19	-1.6
2,783,814	-		EFB2_02632	0.19	-0.8
2,783,814	-		EFB2_02632	0.19	-0.0
2,783,814	-		EFB2_02632	0.19	-1.7
2,783,839	+		EFB2_02632	0.21	-2.3
2,783,839	+		EFB2_02632	0.21	-2.2
2,783,839	+		EFB2_02632	0.21	+1.1
2,783,839	+		EFB2_02632	0.21	-3.1
2,783,839	+		EFB2_02632	0.21	-1.5
2,783,839	+		EFB2_02632	0.21	+1.1
2,783,840	-		EFB2_02632	0.21	+0.7
2,783,840	-		EFB2_02632	0.21	-2.1
2,783,840	-		EFB2_02632	0.21	-1.9
2,783,894	+		EFB2_02632	0.25	-0.5
2,783,894	+		EFB2_02632	0.25	-0.1
2,783,894	+		EFB2_02632	0.25	+0.4
2,783,895	-		EFB2_02632	0.25	+1.3
2,783,895	-		EFB2_02632	0.25	+2.8
2,783,895	-		EFB2_02632	0.25	-0.7
2,783,895	-		EFB2_02632	0.25	-2.5
2,784,047	+		EFB2_02632	0.36	-1.4
2,784,048	-		EFB2_02632	0.36	-2.7
2,784,048	-		EFB2_02632	0.36	-0.5
2,784,048	-		EFB2_02632	0.36	-0.4
2,784,048	-		EFB2_02632	0.36	+1.1
2,784,071	+		EFB2_02632	0.38	-3.2
2,784,071	+		EFB2_02632	0.38	+1.9
2,784,072	-		EFB2_02632	0.38	+1.6
2,784,072	-		EFB2_02632	0.38	-0.3
2,784,072	-		EFB2_02632	0.38	+0.7
2,784,072	-		EFB2_02632	0.38	-1.1
2,784,072	-		EFB2_02632	0.38	-0.9
2,784,120	+		EFB2_02632	0.42	-2.1
2,784,121	-		EFB2_02632	0.42	+0.0
2,784,141	+		EFB2_02632	0.43	-0.5
2,784,141	+		EFB2_02632	0.43	-0.8
2,784,141	+		EFB2_02632	0.43	+2.9
2,784,141	+		EFB2_02632	0.43	+1.7
2,784,141	+		EFB2_02632	0.43	+0.8
2,784,142	-		EFB2_02632	0.43	+0.7
2,784,142	-		EFB2_02632	0.43	+0.6
2,784,142	-		EFB2_02632	0.43	+0.2
2,784,142	-		EFB2_02632	0.43	-0.2
2,784,142	-		EFB2_02632	0.43	-0.7
2,784,142	-		EFB2_02632	0.43	+1.6
2,784,142	-		EFB2_02632	0.43	+1.7
2,784,142	-		EFB2_02632	0.43	-0.4
2,784,142	-		EFB2_02632	0.43	+2.1
2,784,201	-		EFB2_02632	0.48	-0.7
2,784,201	-		EFB2_02632	0.48	-0.2
2,784,201	-		EFB2_02632	0.48	-2.5
2,784,201	-		EFB2_02632	0.48	+1.2
2,784,201	-		EFB2_02632	0.48	-1.6
2,784,211	-		EFB2_02632	0.48	+0.5
2,784,211	-		EFB2_02632	0.48	-2.6
2,784,228	-		EFB2_02632	0.50	+3.0
2,784,250	+		EFB2_02632	0.51	+0.1
2,784,280	+		EFB2_02632	0.53	+0.0
2,784,281	-		EFB2_02632	0.53	+0.3
2,784,513	+		EFB2_02632	0.70	-0.9
2,784,514	-		EFB2_02632	0.70	+0.9
2,784,525	-		EFB2_02632	0.71	+0.5
2,784,540	+		EFB2_02632	0.72	+1.3
2,784,540	+		EFB2_02632	0.72	+1.3
2,784,540	+		EFB2_02632	0.72	+0.6
2,784,540	+		EFB2_02632	0.72	-2.2
2,784,540	+		EFB2_02632	0.72	+1.0
2,784,540	+		EFB2_02632	0.72	-1.1
2,784,540	+		EFB2_02632	0.72	+0.8
2,784,540	+		EFB2_02632	0.72	-1.1
2,784,541	-		EFB2_02632	0.72	+1.2
2,784,541	-		EFB2_02632	0.72	+0.5
2,784,541	-		EFB2_02632	0.72	+0.0
2,784,541	-		EFB2_02632	0.72	+2.0
2,784,541	-		EFB2_02632	0.72	-1.5
2,784,541	-		EFB2_02632	0.72	-0.8
2,784,541	-		EFB2_02632	0.72	+1.1
2,784,541	-		EFB2_02632	0.72	-0.3
2,784,541	-		EFB2_02632	0.72	-0.7
2,784,541	-		EFB2_02632	0.72	-2.7
2,784,545	+		EFB2_02632	0.73	+2.7
2,784,545	+		EFB2_02632	0.73	+2.3
2,784,545	+		EFB2_02632	0.73	+1.1
2,784,545	+		EFB2_02632	0.73	-0.3
2,784,545	+		EFB2_02632	0.73	+1.3
2,784,545	+		EFB2_02632	0.73	+1.4
2,784,545	+		EFB2_02632	0.73	+0.8
2,784,545	+		EFB2_02632	0.73	-0.7
2,784,545	+		EFB2_02632	0.73	-2.1
2,784,545	+		EFB2_02632	0.73	-0.4
2,784,545	+		EFB2_02632	0.73	-0.3
2,784,546	-		EFB2_02632	0.73	-1.2
2,784,546	-		EFB2_02632	0.73	+1.7
2,784,546	-		EFB2_02632	0.73	-0.1
2,784,546	-		EFB2_02632	0.73	-1.7
2,784,546	-		EFB2_02632	0.73	-2.2
2,784,546	-		EFB2_02632	0.73	-1.1
2,784,546	-		EFB2_02632	0.73	+0.1
2,784,546	-		EFB2_02632	0.73	-0.1
2,784,546	-		EFB2_02632	0.73	+1.7
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2,785,908	+		EFB2_02633	0.32	+4.8
2,785,908	+		EFB2_02633	0.32	+0.3
2,785,909	-		EFB2_02633	0.32	+1.0
2,785,909	-		EFB2_02633	0.32	+2.0