Strain Fitness in Escherichia fergusonii Becca around EFB2_02150

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,283,975	+		EFB2_02149	0.14	-3.0
2,284,009	+		EFB2_02149	0.17	+2.5
2,284,009	+		EFB2_02149	0.17	-2.0
2,284,009	+		EFB2_02149	0.17	-0.5
2,284,009	+		EFB2_02149	0.17	-0.8
2,284,009	+		EFB2_02149	0.17	-3.3
2,284,009	+		EFB2_02149	0.17	-1.3
2,284,009	+		EFB2_02149	0.17	-1.0
2,284,009	+		EFB2_02149	0.17	-0.7
2,284,009	+		EFB2_02149	0.17	-0.1
2,284,010	-		EFB2_02149	0.17	+0.4
2,284,010	-		EFB2_02149	0.17	-1.4
2,284,010	-		EFB2_02149	0.17	-2.6
2,284,010	-		EFB2_02149	0.17	+1.0
2,284,010	-		EFB2_02149	0.17	-1.5
2,284,010	-		EFB2_02149	0.17	+0.3
2,284,010	-		EFB2_02149	0.17	-2.5
2,284,010	-		EFB2_02149	0.17	+1.4
2,284,010	-		EFB2_02149	0.17	+1.3
2,284,011	+		EFB2_02149	0.17	-2.9
2,284,011	+		EFB2_02149	0.17	-0.7
2,284,011	+		EFB2_02149	0.17	+0.9
2,284,011	+		EFB2_02149	0.17	-2.8
2,284,011	+		EFB2_02149	0.17	+1.3
2,284,011	+		EFB2_02149	0.17	-0.2
2,284,012	-		EFB2_02149	0.17	+1.6
2,284,012	-		EFB2_02149	0.17	-0.4
2,284,012	-		EFB2_02149	0.17	-0.2
2,284,012	-		EFB2_02149	0.17	-2.9
2,284,147	+		EFB2_02149	0.29	+2.5
2,284,147	+		EFB2_02149	0.29	+0.3
2,284,148	-		EFB2_02149	0.29	-0.3
2,284,148	-		EFB2_02149	0.29	-0.9
2,284,149	+		EFB2_02149	0.29	-0.9
2,284,149	+		EFB2_02149	0.29	-1.4
2,284,149	+		EFB2_02149	0.29	+2.3
2,284,149	+		EFB2_02149	0.29	-2.7
2,284,149	+		EFB2_02149	0.29	-0.3
2,284,149	+		EFB2_02149	0.29	-3.3
2,284,149	+		EFB2_02149	0.29	-1.4
2,284,149	+		EFB2_02149	0.29	-0.9
2,284,150	-		EFB2_02149	0.29	-2.6
2,284,150	-		EFB2_02149	0.29	-1.2
2,284,150	-		EFB2_02149	0.29	+2.0
2,284,150	-		EFB2_02149	0.29	-3.0
2,284,188	+		EFB2_02149	0.32	-1.0
2,284,241	+		EFB2_02149	0.37	-1.6
2,284,241	+		EFB2_02149	0.37	+1.0
2,284,248	+		EFB2_02149	0.38	-0.5
2,284,261	-		EFB2_02149	0.39	+0.5
2,284,261	-		EFB2_02149	0.39	+0.5
2,284,347	+		EFB2_02149	0.46	+0.6
2,284,354	+		EFB2_02149	0.47	+1.5
2,284,368	+		EFB2_02149	0.48	-0.8
2,284,368	+		EFB2_02149	0.48	-0.9
2,284,368	+		EFB2_02149	0.48	-0.5
2,284,369	-		EFB2_02149	0.48	+2.5
2,284,372	+		EFB2_02149	0.48	-0.0
2,284,372	+		EFB2_02149	0.48	-2.6
2,284,372	+		EFB2_02149	0.48	-2.0
2,284,373	-		EFB2_02149	0.49	-0.0
2,284,373	-		EFB2_02149	0.49	-2.1
2,284,373	-		EFB2_02149	0.49	-2.8
2,284,373	-		EFB2_02149	0.49	+2.3
2,284,373	-		EFB2_02149	0.49	+1.4
2,284,373	-		EFB2_02149	0.49	+2.6
2,284,382	+		EFB2_02149	0.49	-2.1
2,284,425	+		EFB2_02149	0.53	-2.5
2,284,426	-		EFB2_02149	0.53	+0.0
2,284,426	-		EFB2_02149	0.53	-2.4
2,284,426	-		EFB2_02149	0.53	-1.7
2,284,426	-		EFB2_02149	0.53	+1.6
2,284,426	-		EFB2_02149	0.53	-0.3
2,284,426	-		EFB2_02149	0.53	+1.9
2,284,429	-		EFB2_02149	0.53	+2.1
2,284,438	-		EFB2_02149	0.54	-0.4
2,284,526	+		EFB2_02149	0.62	+0.4
2,284,527	-		EFB2_02149	0.62	+0.5
2,284,527	-		EFB2_02149	0.62	+0.5
2,284,527	-		EFB2_02149	0.62	+0.6
2,284,527	-		EFB2_02149	0.62	+1.4
2,284,527	-		EFB2_02149	0.62	-0.0
2,284,535	-		EFB2_02149	0.63	+0.3
2,284,538	-		EFB2_02149	0.63	+1.5
2,284,538	-		EFB2_02149	0.63	-0.7
2,284,627	+		EFB2_02149	0.71	-2.6
2,284,627	+		EFB2_02149	0.71	+0.2
2,284,627	+		EFB2_02149	0.71	-0.9
2,284,627	+		EFB2_02149	0.71	-0.0
2,284,627	+		EFB2_02149	0.71	-1.3
2,284,627	+		EFB2_02149	0.71	-0.3
2,284,627	+		EFB2_02149	0.71	-2.5
2,284,628	-		EFB2_02149	0.71	-0.3
2,284,628	-		EFB2_02149	0.71	+0.8
2,284,628	-		EFB2_02149	0.71	-1.0
2,284,628	-		EFB2_02149	0.71	-0.4
2,284,645	+		EFB2_02149	0.72	-0.0
2,284,645	+		EFB2_02149	0.72	-0.5
2,284,645	+		EFB2_02149	0.72	+0.3
2,284,645	+		EFB2_02149	0.72	-1.2
2,284,645	+		EFB2_02149	0.72	-1.6
2,284,645	+		EFB2_02149	0.72	-2.7
2,284,645	+		EFB2_02149	0.72	-0.5
2,284,645	+		EFB2_02149	0.72	+0.0
2,284,645	+		EFB2_02149	0.72	+0.3
2,284,646	-		EFB2_02149	0.72	+4.4
2,284,646	-		EFB2_02149	0.72	-1.0
2,284,646	-		EFB2_02149	0.72	-1.0
2,284,646	-		EFB2_02149	0.72	+2.0
2,284,646	-		EFB2_02149	0.72	+1.1
2,284,646	-		EFB2_02149	0.72	-0.4
2,284,648	-		EFB2_02149	0.73	+0.7
2,284,648	-		EFB2_02149	0.73	-1.3
2,284,648	-		EFB2_02149	0.73	-0.9
2,284,657	+		EFB2_02149	0.73	-2.8
2,284,657	+		EFB2_02149	0.73	+3.9
2,284,657	+		EFB2_02149	0.73	-1.7
2,284,657	+		EFB2_02149	0.73	+0.7
2,284,657	+		EFB2_02149	0.73	+1.2
2,284,657	+		EFB2_02149	0.73	+1.1
2,284,657	+		EFB2_02149	0.73	-0.4
2,284,658	-		EFB2_02149	0.73	+0.1
2,284,658	-		EFB2_02149	0.73	-1.1
2,284,658	-		EFB2_02149	0.73	+2.0
2,284,658	-		EFB2_02149	0.73	-1.6
2,284,658	-		EFB2_02149	0.73	-2.6
2,284,658	-		EFB2_02149	0.73	-2.0
2,284,659	+		EFB2_02149	0.73	+1.7
2,284,659	+		EFB2_02149	0.73	-1.9
2,284,659	+		EFB2_02149	0.73	-1.5
2,284,659	+		EFB2_02149	0.73	+1.5
2,284,659	+		EFB2_02149	0.73	+0.8
2,284,659	+		EFB2_02149	0.73	+2.8
2,284,659	+		EFB2_02149	0.73	-2.8
2,284,660	-		EFB2_02149	0.74	-2.3
2,284,660	-		EFB2_02149	0.74	+0.7
2,284,660	-		EFB2_02149	0.74	-0.0
2,284,660	-		EFB2_02149	0.74	-0.2
2,284,665	+		EFB2_02149	0.74	-0.3
2,284,665	+		EFB2_02149	0.74	+0.4
2,284,666	-		EFB2_02149	0.74	-2.9
2,284,666	-		EFB2_02149	0.74	-1.3
2,284,770	-		EFB2_02149	0.83	-1.4
2,284,770	-		EFB2_02149	0.83	-2.5
2,284,825	+		EFB2_02149	0.88	-2.8
2,284,826	-		EFB2_02149	0.88	-1.2
2,284,828	+		EFB2_02149	0.88	-1.0
2,284,828	+		EFB2_02149	0.88	+0.7
2,284,828	+		EFB2_02149	0.88	+0.7
2,284,828	+		EFB2_02149	0.88	+1.1
2,284,828	+		EFB2_02149	0.88	+2.9
2,284,828	+		EFB2_02149	0.88	-0.4
2,284,828	+		EFB2_02149	0.88	-1.0
2,284,828	+		EFB2_02149	0.88	+1.4
2,284,828	+		EFB2_02149	0.88	-0.9
2,284,828	+		EFB2_02149	0.88	-1.1
2,284,828	+		EFB2_02149	0.88	+0.1
2,284,828	+		EFB2_02149	0.88	+2.7
2,284,828	+		EFB2_02149	0.88	-2.1
2,284,828	+		EFB2_02149	0.88	-2.2
2,284,828	+		EFB2_02149	0.88	-0.0
2,284,828	+		EFB2_02149	0.88	-0.2
2,284,828	+		EFB2_02149	0.88	-1.3
2,284,828	+		EFB2_02149	0.88	-0.6
2,284,828	+		EFB2_02149	0.88	-1.5
2,284,828	+		EFB2_02149	0.88	-1.2
2,284,828	+		EFB2_02149	0.88	-2.7
2,284,828	+		EFB2_02149	0.88	-0.7
2,284,829	-		EFB2_02149	0.88	-1.3
2,284,829	-		EFB2_02149	0.88	-2.3
2,284,829	-		EFB2_02149	0.88	-1.7
2,284,829	-		EFB2_02149	0.88	-2.2
2,284,829	-		EFB2_02149	0.88	+0.7
2,284,829	-		EFB2_02149	0.88	-1.6
2,284,829	-		EFB2_02149	0.88	+0.2
2,284,829	-		EFB2_02149	0.88	+0.6
2,284,829	-		EFB2_02149	0.88	+1.4
2,284,829	-		EFB2_02149	0.88	-3.8
2,284,829	-		EFB2_02149	0.88	+0.6
2,284,829	-		EFB2_02149	0.88	-1.1
2,284,832	+		EFB2_02149	0.89	-2.7
2,284,832	+		EFB2_02149	0.89	-1.5
2,284,832	+		EFB2_02149	0.89	+0.5
2,284,832	+		EFB2_02149	0.89	-1.2
2,284,832	+		EFB2_02149	0.89	-1.7
2,284,832	+		EFB2_02149	0.89	-3.0
2,284,832	+		EFB2_02149	0.89	-0.4
2,284,832	+		EFB2_02149	0.89	-0.9
2,284,832	+		EFB2_02149	0.89	-0.9
2,284,832	+		EFB2_02149	0.89	-2.2
2,284,832	+		EFB2_02149	0.89	+0.7
2,284,832	+		EFB2_02149	0.89	-0.9
2,284,833	-		EFB2_02149	0.89	-1.0
2,284,833	-		EFB2_02149	0.89	-2.4
2,284,833	-		EFB2_02149	0.89	+0.6
2,284,833	-		EFB2_02149	0.89	-1.9
2,284,833	-		EFB2_02149	0.89	-0.3
2,284,833	-		EFB2_02149	0.89	-1.0
2,284,834	+		EFB2_02149	0.89	-0.6
2,284,834	+		EFB2_02149	0.89	-1.9
2,284,834	+		EFB2_02149	0.89	+1.4
2,284,835	-		EFB2_02149	0.89	-1.3
2,284,835	-		EFB2_02149	0.89	-0.8
2,284,908	-				-0.8
2,284,931	-				+0.4
2,284,931	-				+0.3
2,284,940	+				-1.5
2,284,940	+				+0.2
2,284,940	+				+0.5
2,284,940	+				-0.2
2,284,940	+				-2.2
2,284,941	-				+1.7
2,284,941	-				+0.3
2,284,948	-				-2.1
2,284,948	-				+2.0
2,284,978	+				+0.8
2,284,978	+				-2.5
2,284,978	+				+0.3
2,284,979	-				-0.9
2,284,979	-				-0.6
2,284,979	-				-0.2
2,284,979	-				-0.2
2,284,979	-				-1.8
2,284,979	-				-1.0
2,284,979	-				-3.4
2,284,982	+				-0.3
2,284,982	+				-3.5
2,284,982	+				+0.3
2,284,982	+				-1.6
2,284,982	+				+1.3
2,284,982	+				+2.0
2,284,983	-				-1.0
2,284,983	-				+0.6
2,284,983	-				-2.0
2,284,983	-				+1.5
2,284,983	-				-0.7
2,284,990	+				-0.6
2,284,990	+				-0.3
2,284,990	+				+3.1
2,284,990	+				-0.3
2,284,990	+				-0.5
2,284,990	+				+2.4
2,284,990	+				-2.4
2,284,991	-				+1.1
2,284,991	-				-1.3
2,284,991	-				+0.7
2,285,149	+		EFB2_02150	0.40	-2.2
2,285,216	+		EFB2_02150	0.55	-2.0
2,285,216	+		EFB2_02150	0.55	+1.6
2,285,216	+		EFB2_02150	0.55	+1.0
2,285,216	+		EFB2_02150	0.55	+0.3
2,285,216	+		EFB2_02150	0.55	-0.1
2,285,216	+		EFB2_02150	0.55	+1.9
2,285,216	+		EFB2_02150	0.55	-1.2
2,285,216	+		EFB2_02150	0.55	-0.7
2,285,216	+		EFB2_02150	0.55	-1.4
2,285,216	+		EFB2_02150	0.55	-1.0
2,285,217	-		EFB2_02150	0.55	-1.2
2,285,217	-		EFB2_02150	0.55	-2.2
2,285,217	-		EFB2_02150	0.55	-0.3
2,285,218	+		EFB2_02150	0.56	-2.0
2,285,219	-		EFB2_02150	0.56	-2.3
2,285,254	+		EFB2_02150	0.64	-1.7
2,285,254	+		EFB2_02150	0.64	+0.2
2,285,254	+		EFB2_02150	0.64	-0.3
2,285,255	-		EFB2_02150	0.64	-3.8
2,285,356	+		EFB2_02150	0.87	-0.5
2,285,356	+		EFB2_02150	0.87	-1.2
2,285,356	+		EFB2_02150	0.87	-1.5
2,285,356	+		EFB2_02150	0.87	-0.5
2,285,356	+		EFB2_02150	0.87	-2.4
2,285,356	+		EFB2_02150	0.87	-1.8
2,285,356	+		EFB2_02150	0.87	+1.7
2,285,357	-		EFB2_02150	0.87	-3.0
2,285,357	-		EFB2_02150	0.87	-2.3
2,285,357	-		EFB2_02150	0.87	-1.0
2,285,357	-		EFB2_02150	0.87	+2.5
2,285,357	-		EFB2_02150	0.87	-2.0
2,285,357	-		EFB2_02150	0.87	-3.7
2,285,357	-		EFB2_02150	0.87	-0.3
2,285,357	-		EFB2_02150	0.87	-0.8
2,285,357	-		EFB2_02150	0.87	-4.8
2,285,357	-		EFB2_02150	0.87	-0.7
2,285,411	+				+2.0
2,285,412	-				-0.2
2,285,412	-				-2.9
2,285,412	-				-2.1
2,285,414	+				+0.6
2,285,414	+				+1.6
2,285,415	-				-0.6
2,285,415	-				+0.4
2,285,415	-				-1.1
2,285,415	-				-0.1
2,285,415	-				-2.4
2,285,415	-				+1.6
2,285,415	-				-2.6
2,285,415	-				-1.9
2,285,431	+				-0.8
2,285,431	+				+0.5
2,285,432	-				+1.3
2,285,432	-				-1.1
2,285,432	-				-2.2
2,285,671	+		EFB2_02151	0.56	-0.1
2,285,707	+		EFB2_02151	0.64	+2.1
2,285,708	-		EFB2_02151	0.64	+1.3
2,285,708	-		EFB2_02151	0.64	+1.0
2,285,708	-		EFB2_02151	0.64	+0.2
2,285,727	+		EFB2_02151	0.68	-1.5
2,285,727	+		EFB2_02151	0.68	-3.7
2,285,728	-		EFB2_02151	0.69	-2.6
2,285,731	+		EFB2_02151	0.69	+0.2
2,285,732	-		EFB2_02151	0.70	+0.3
2,285,758	+		EFB2_02151	0.75	+1.0
2,285,759	-		EFB2_02151	0.75	+2.4
2,285,759	-		EFB2_02151	0.75	+1.6
2,285,759	-		EFB2_02151	0.75	-1.4
2,285,867	+				-1.0
2,285,868	-				-0.6
2,285,877	+				-1.3
2,285,878	-				-0.2
2,285,878	-				-1.7
2,285,928	+				+2.3
2,285,929	-				-1.8
2,285,929	-				-0.0
2,285,946	+				+2.3
2,285,947	-				+0.3
2,285,947	-				+0.7
2,285,960	+				+0.9
2,285,961	-				-2.2
2,285,985	+				-0.9
2,285,986	-				-0.4
2,285,986	-				-0.3
2,285,986	-				-0.5
2,285,992	+				+1.9
2,285,992	+				-3.2
2,285,992	+				-2.4
2,285,992	+				+0.7
2,285,992	+				-2.5
2,285,993	-				+0.3
2,285,993	-				+1.3
2,285,993	-				+0.9
2,285,993	-				+1.3
2,285,993	-				-1.1
2,285,993	-				+2.9
2,286,000	+				-3.1
2,286,000	+				-2.4
2,286,000	+				-2.3
2,286,000	+				-2.0
2,286,000	+				-1.2
2,286,000	+				+1.0
2,286,000	+				+0.5
2,286,000	+				+1.5
2,286,000	+				+0.3
2,286,000	+				+0.4
2,286,000	+				-0.8
2,286,001	-				-0.7
2,286,001	-				-1.3
2,286,001	-				-2.5
2,286,001	-				-2.5
2,286,001	-				+0.3
2,286,001	-				+0.1
2,286,001	-				-1.6
2,286,061	+				-0.3
2,286,061	+				-0.9
2,286,061	+				-0.4
2,286,061	+				-2.0
2,286,062	-				+0.5
2,286,062	-				+1.9
2,286,062	-				-2.2
2,286,064	+				+0.4
2,286,064	+				+0.6
2,286,064	+				+0.5
2,286,065	-				+0.5
2,286,239	+				-1.4
2,286,239	+				-0.8
2,286,286	+		EFB2_02152	0.12	-0.7
2,286,286	+		EFB2_02152	0.12	+0.3
2,286,287	-		EFB2_02152	0.12	+1.5
2,286,287	-		EFB2_02152	0.12	-1.3
2,286,287	-		EFB2_02152	0.12	-2.0
2,286,287	-		EFB2_02152	0.12	+1.0
2,286,293	+		EFB2_02152	0.12	-0.8
2,286,293	+		EFB2_02152	0.12	-0.8
2,286,367	+		EFB2_02152	0.16	-1.4
2,286,367	+		EFB2_02152	0.16	-3.7
2,286,367	+		EFB2_02152	0.16	-0.8
2,286,367	+		EFB2_02152	0.16	-0.6
2,286,370	+		EFB2_02152	0.16	-1.3
2,286,370	+		EFB2_02152	0.16	-2.3
2,286,371	-		EFB2_02152	0.16	-1.0
2,286,409	-		EFB2_02152	0.18	-1.8