Strain Fitness in Escherichia fergusonii Becca around EFB2_01827

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,943,458	+		EFB2_01826	0.47	+0.5
1,943,477	+		EFB2_01826	0.49	-0.5
1,943,478	-		EFB2_01826	0.49	-0.5
1,943,500	+		EFB2_01826	0.50	+1.4
1,943,500	+		EFB2_01826	0.50	+1.1
1,943,500	+		EFB2_01826	0.50	+1.3
1,943,500	+		EFB2_01826	0.50	-1.0
1,943,501	-		EFB2_01826	0.51	+2.0
1,943,501	-		EFB2_01826	0.51	-0.8
1,943,527	+		EFB2_01826	0.52	-1.5
1,943,527	+		EFB2_01826	0.52	+1.0
1,943,527	+		EFB2_01826	0.52	-0.3
1,943,527	+		EFB2_01826	0.52	+2.2
1,943,527	+		EFB2_01826	0.52	+1.6
1,943,527	+		EFB2_01826	0.52	+0.8
1,943,527	+		EFB2_01826	0.52	+0.1
1,943,527	+		EFB2_01826	0.52	-2.0
1,943,527	+		EFB2_01826	0.52	-1.3
1,943,528	-		EFB2_01826	0.52	-1.5
1,943,528	-		EFB2_01826	0.52	-0.7
1,943,528	-		EFB2_01826	0.52	+2.0
1,943,528	-		EFB2_01826	0.52	+0.7
1,943,531	+		EFB2_01826	0.53	-0.2
1,943,531	+		EFB2_01826	0.53	+0.0
1,943,531	+		EFB2_01826	0.53	+1.3
1,943,531	+		EFB2_01826	0.53	-1.5
1,943,531	+		EFB2_01826	0.53	+1.0
1,943,531	+		EFB2_01826	0.53	+0.0
1,943,532	-		EFB2_01826	0.53	-0.6
1,943,532	-		EFB2_01826	0.53	+0.5
1,943,532	-		EFB2_01826	0.53	+3.7
1,943,572	+		EFB2_01826	0.56	+0.8
1,943,572	+		EFB2_01826	0.56	-0.3
1,943,651	+		EFB2_01826	0.61	+0.0
1,943,651	+		EFB2_01826	0.61	-0.3
1,943,651	+		EFB2_01826	0.61	+0.5
1,943,651	+		EFB2_01826	0.61	+0.6
1,943,651	+		EFB2_01826	0.61	-1.9
1,943,651	+		EFB2_01826	0.61	-1.1
1,943,651	+		EFB2_01826	0.61	-1.4
1,943,651	+		EFB2_01826	0.61	+0.5
1,943,651	+		EFB2_01826	0.61	-0.3
1,943,651	+		EFB2_01826	0.61	-2.5
1,943,651	+		EFB2_01826	0.61	+0.0
1,943,651	+		EFB2_01826	0.61	+0.7
1,943,652	-		EFB2_01826	0.61	-1.3
1,943,652	-		EFB2_01826	0.61	-0.5
1,943,652	-		EFB2_01826	0.61	+1.6
1,943,652	-		EFB2_01826	0.61	-0.3
1,943,652	-		EFB2_01826	0.61	+0.3
1,943,652	-		EFB2_01826	0.61	+0.7
1,943,652	-		EFB2_01826	0.61	+0.0
1,943,652	-		EFB2_01826	0.61	+0.5
1,943,655	+		EFB2_01826	0.61	-0.2
1,943,655	+		EFB2_01826	0.61	-0.5
1,943,655	+		EFB2_01826	0.61	-0.9
1,943,655	+		EFB2_01826	0.61	-0.2
1,943,655	+		EFB2_01826	0.61	-2.3
1,943,655	+		EFB2_01826	0.61	-1.1
1,943,655	+		EFB2_01826	0.61	-0.5
1,943,655	+		EFB2_01826	0.61	+2.2
1,943,655	+		EFB2_01826	0.61	-0.1
1,943,655	+		EFB2_01826	0.61	-0.8
1,943,655	+		EFB2_01826	0.61	-0.6
1,943,655	+		EFB2_01826	0.61	-1.2
1,943,655	+		EFB2_01826	0.61	+0.0
1,943,655	+		EFB2_01826	0.61	-1.0
1,943,655	+		EFB2_01826	0.61	-1.2
1,943,655	+		EFB2_01826	0.61	-0.1
1,943,655	+		EFB2_01826	0.61	+3.2
1,943,655	+		EFB2_01826	0.61	-0.1
1,943,655	+		EFB2_01826	0.61	-1.0
1,943,655	+		EFB2_01826	0.61	+1.9
1,943,655	+		EFB2_01826	0.61	+1.7
1,943,655	+		EFB2_01826	0.61	+0.0
1,943,655	+		EFB2_01826	0.61	-1.0
1,943,655	+		EFB2_01826	0.61	+0.3
1,943,655	+		EFB2_01826	0.61	-1.1
1,943,655	+		EFB2_01826	0.61	+1.4
1,943,655	+		EFB2_01826	0.61	-0.2
1,943,656	-		EFB2_01826	0.62	+3.0
1,943,656	-		EFB2_01826	0.62	+2.3
1,943,656	-		EFB2_01826	0.62	+1.3
1,943,656	-		EFB2_01826	0.62	-0.3
1,943,656	-		EFB2_01826	0.62	-0.5
1,943,656	-		EFB2_01826	0.62	-2.3
1,943,656	-		EFB2_01826	0.62	-0.8
1,943,656	-		EFB2_01826	0.62	+0.6
1,943,656	-		EFB2_01826	0.62	+0.2
1,943,656	-		EFB2_01826	0.62	-1.1
1,943,656	-		EFB2_01826	0.62	-1.5
1,943,689	+		EFB2_01826	0.64	+2.4
1,943,765	+		EFB2_01826	0.69	-2.8
1,943,765	+		EFB2_01826	0.69	+2.0
1,943,765	+		EFB2_01826	0.69	-2.1
1,943,786	+		EFB2_01826	0.71	-2.3
1,943,786	+		EFB2_01826	0.71	-1.4
1,943,786	+		EFB2_01826	0.71	+0.5
1,943,786	+		EFB2_01826	0.71	-0.3
1,943,786	+		EFB2_01826	0.71	-0.1
1,943,787	-		EFB2_01826	0.71	-2.7
1,943,787	-		EFB2_01826	0.71	+0.0
1,943,808	+		EFB2_01826	0.72	-2.0
1,943,808	+		EFB2_01826	0.72	+0.0
1,943,809	-		EFB2_01826	0.72	-1.5
1,943,809	-		EFB2_01826	0.72	-1.5
1,943,828	+		EFB2_01826	0.74	+2.0
1,943,828	+		EFB2_01826	0.74	-0.3
1,943,828	+		EFB2_01826	0.74	-1.1
1,943,828	+		EFB2_01826	0.74	-0.1
1,943,846	+		EFB2_01826	0.75	-1.4
1,943,921	+		EFB2_01826	0.80	+0.7
1,943,921	+		EFB2_01826	0.80	+1.8
1,943,921	+		EFB2_01826	0.80	-1.5
1,943,921	+		EFB2_01826	0.80	+0.2
1,943,921	+		EFB2_01826	0.80	+1.2
1,943,921	+		EFB2_01826	0.80	+0.3
1,943,922	-		EFB2_01826	0.80	+1.0
1,943,922	-		EFB2_01826	0.80	+0.6
1,943,944	+		EFB2_01826	0.82	-2.0
1,943,963	+		EFB2_01826	0.83	+0.2
1,943,963	+		EFB2_01826	0.83	-1.1
1,943,963	+		EFB2_01826	0.83	-2.4
1,943,963	+		EFB2_01826	0.83	-0.1
1,943,964	-		EFB2_01826	0.83	-1.0
1,943,964	-		EFB2_01826	0.83	+0.6
1,943,964	-		EFB2_01826	0.83	-0.5
1,943,964	-		EFB2_01826	0.83	+2.2
1,943,964	-		EFB2_01826	0.83	-1.1
1,943,964	-		EFB2_01826	0.83	+3.6
1,943,987	+		EFB2_01826	0.85	-3.1
1,944,018	-		EFB2_01826	0.87	+0.7
1,944,018	-		EFB2_01826	0.87	-0.3
1,944,024	+		EFB2_01826	0.88	-0.5
1,944,068	+				+1.1
1,944,068	+				+1.7
1,944,068	+				-3.2
1,944,069	-				-1.8
1,944,071	+				-1.1
1,944,071	+				+0.7
1,944,071	+				+0.5
1,944,071	+				-2.0
1,944,072	-				+0.6
1,944,072	-				-2.5
1,944,080	+				-3.4
1,944,080	+				-1.2
1,944,080	+				-1.4
1,944,080	+				-1.0
1,944,080	+				+0.2
1,944,081	-				-1.4
1,944,142	+				+0.5
1,944,142	+				+1.6
1,944,143	-				-0.5
1,944,143	-				+1.7
1,944,143	-				-0.9
1,944,146	+				-2.4
1,944,146	+				-3.8
1,944,146	+				-1.2
1,944,146	+				-0.7
1,944,146	+				-0.5
1,944,146	+				+0.5
1,944,146	+				+0.0
1,944,146	+				-0.4
1,944,146	+				-0.1
1,944,146	+				+2.0
1,944,146	+				-1.1
1,944,146	+				+1.9
1,944,147	-				+0.3
1,944,147	-				-1.1
1,944,147	-				+0.2
1,944,147	-				-1.4
1,944,147	-				+0.6
1,944,148	+				+0.3
1,944,148	+				+0.0
1,944,148	+				+2.0
1,944,148	+				+1.5
1,944,149	-				+2.6
1,944,149	-				-0.3
1,944,149	-				-2.1
1,944,149	-				+1.3
1,944,178	+				+0.2
1,944,204	+				-0.1
1,944,204	+				+1.7
1,944,232	+				+1.3
1,944,233	-				-0.3
1,944,233	-				-2.2
1,944,233	-				+2.2
1,944,233	-				-1.4
1,944,235	-				-1.0
1,944,259	+				-0.1
1,944,259	+				-2.8
1,944,259	+				-0.6
1,944,266	+				+1.7
1,944,266	+				+0.4
1,944,267	-				+2.9
1,944,291	+				+0.6
1,944,303	+				-2.4
1,944,317	-				+0.5
1,944,317	-				-0.1
1,944,366	-				-0.3
1,944,399	-				-3.4
1,944,420	+				-0.2
1,944,421	-				-0.3
1,944,421	-				-1.5
1,944,470	+				+0.9
1,944,470	+				+0.7
1,944,470	+				+0.8
1,944,470	+				+0.1
1,944,471	-				-0.0
1,944,474	+				+0.1
1,944,474	+				-2.4
1,944,474	+				+0.1
1,944,474	+				+0.6
1,944,474	+				+0.7
1,944,474	+				-2.8
1,944,475	-				+2.0
1,944,475	-				+3.3
1,944,529	+				-0.8
1,944,529	+				-0.6
1,944,530	-				-1.5
1,944,550	+				+0.3
1,944,551	-				-0.5
1,944,567	+		EFB2_01827	0.11	+1.2
1,944,574	+		EFB2_01827	0.11	+1.5
1,944,619	-		EFB2_01827	0.15	-0.1
1,944,636	+		EFB2_01827	0.17	+0.1
1,944,636	+		EFB2_01827	0.17	+0.6
1,944,637	-		EFB2_01827	0.17	-0.1
1,944,637	-		EFB2_01827	0.17	-2.1
1,944,641	-		EFB2_01827	0.17	+1.7
1,944,668	+		EFB2_01827	0.19	+0.7
1,944,668	+		EFB2_01827	0.19	-0.4
1,944,668	+		EFB2_01827	0.19	+2.4
1,944,668	+		EFB2_01827	0.19	+0.1
1,944,669	-		EFB2_01827	0.19	-2.5
1,944,669	-		EFB2_01827	0.19	+1.4
1,944,669	-		EFB2_01827	0.19	-0.5
1,944,669	-		EFB2_01827	0.19	+1.0
1,944,703	+		EFB2_01827	0.22	+0.2
1,944,709	+		EFB2_01827	0.23	+2.3
1,944,710	-		EFB2_01827	0.23	-1.1
1,944,714	-		EFB2_01827	0.23	-0.1
1,944,721	+		EFB2_01827	0.24	+0.9
1,944,721	+		EFB2_01827	0.24	+1.1
1,944,721	+		EFB2_01827	0.24	-0.5
1,944,733	-		EFB2_01827	0.25	-0.8
1,944,745	+		EFB2_01827	0.26	-0.4
1,944,745	+		EFB2_01827	0.26	+0.6
1,944,753	+		EFB2_01827	0.27	-2.0
1,944,762	+		EFB2_01827	0.27	-0.8
1,944,833	+		EFB2_01827	0.33	+0.9
1,944,833	+		EFB2_01827	0.33	+0.7
1,944,834	-		EFB2_01827	0.34	-0.0
1,944,847	+		EFB2_01827	0.35	+1.1
1,944,851	-		EFB2_01827	0.35	+0.3
1,944,881	-		EFB2_01827	0.38	-2.3
1,944,913	+		EFB2_01827	0.40	-1.7
1,944,913	+		EFB2_01827	0.40	-0.9
1,944,913	+		EFB2_01827	0.40	-0.8
1,944,914	-		EFB2_01827	0.40	-0.3
1,944,914	-		EFB2_01827	0.40	+0.5
1,944,914	-		EFB2_01827	0.40	+0.9
1,944,914	-		EFB2_01827	0.40	-1.9
1,944,963	+		EFB2_01827	0.45	-2.5
1,944,963	+		EFB2_01827	0.45	+0.9
1,944,964	-		EFB2_01827	0.45	+0.8
1,944,980	-		EFB2_01827	0.46	-1.1
1,944,989	-		EFB2_01827	0.47	+0.6
1,945,031	-		EFB2_01827	0.50	+1.1
1,945,031	-		EFB2_01827	0.50	-0.4
1,945,042	+		EFB2_01827	0.51	+0.9
1,945,042	+		EFB2_01827	0.51	-0.8
1,945,042	+		EFB2_01827	0.51	-0.2
1,945,042	+		EFB2_01827	0.51	-0.7
1,945,043	-		EFB2_01827	0.51	+0.5
1,945,043	-		EFB2_01827	0.51	-0.8
1,945,043	-		EFB2_01827	0.51	-2.8
1,945,045	+		EFB2_01827	0.52	+0.5
1,945,045	+		EFB2_01827	0.52	+0.7
1,945,045	+		EFB2_01827	0.52	+0.6
1,945,045	+		EFB2_01827	0.52	-0.1
1,945,045	+		EFB2_01827	0.52	-3.9
1,945,045	+		EFB2_01827	0.52	-1.0
1,945,045	+		EFB2_01827	0.52	+0.0
1,945,045	+		EFB2_01827	0.52	+0.4
1,945,045	+		EFB2_01827	0.52	-0.5
1,945,045	+		EFB2_01827	0.52	-1.8
1,945,046	-		EFB2_01827	0.52	-0.3
1,945,046	-		EFB2_01827	0.52	-0.2
1,945,046	-		EFB2_01827	0.52	-1.0
1,945,046	-		EFB2_01827	0.52	+1.5
1,945,049	+		EFB2_01827	0.52	+0.7
1,945,049	+		EFB2_01827	0.52	+1.2
1,945,049	+		EFB2_01827	0.52	-0.7
1,945,049	+		EFB2_01827	0.52	-1.2
1,945,050	-		EFB2_01827	0.52	+1.3
1,945,050	-		EFB2_01827	0.52	-0.1
1,945,050	-		EFB2_01827	0.52	+1.0
1,945,050	-		EFB2_01827	0.52	+1.2
1,945,065	+		EFB2_01827	0.53	-1.0
1,945,065	+		EFB2_01827	0.53	+0.1
1,945,066	-		EFB2_01827	0.53	-1.8
1,945,066	-		EFB2_01827	0.53	+2.3
1,945,066	-		EFB2_01827	0.53	+0.6
1,945,070	+		EFB2_01827	0.54	+0.6
1,945,070	+		EFB2_01827	0.54	-0.6
1,945,070	+		EFB2_01827	0.54	+0.8
1,945,070	+		EFB2_01827	0.54	+2.3
1,945,070	+		EFB2_01827	0.54	-0.3
1,945,071	-		EFB2_01827	0.54	-1.4
1,945,071	-		EFB2_01827	0.54	+0.3
1,945,071	-		EFB2_01827	0.54	-0.0
1,945,071	-		EFB2_01827	0.54	+0.9
1,945,071	-		EFB2_01827	0.54	+1.7
1,945,071	-		EFB2_01827	0.54	-1.0
1,945,071	-		EFB2_01827	0.54	+0.1
1,945,071	-		EFB2_01827	0.54	-0.7
1,945,087	+		EFB2_01827	0.55	-0.8
1,945,088	-		EFB2_01827	0.55	+2.0
1,945,088	-		EFB2_01827	0.55	+0.0
1,945,091	+		EFB2_01827	0.56	+0.5
1,945,091	+		EFB2_01827	0.56	+3.4
1,945,091	+		EFB2_01827	0.56	+1.2
1,945,091	+		EFB2_01827	0.56	+0.1
1,945,091	+		EFB2_01827	0.56	+0.3
1,945,091	+		EFB2_01827	0.56	+1.6
1,945,091	+		EFB2_01827	0.56	-1.2
1,945,091	+		EFB2_01827	0.56	-3.0
1,945,091	+		EFB2_01827	0.56	-1.0
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