Strain Fitness in Escherichia fergusonii Becca around EFB2_01825

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,941,280	+		EFB2_01824	0.17	-0.8
1,941,280	+		EFB2_01824	0.17	-0.5
1,941,280	+		EFB2_01824	0.17	-1.0
1,941,341	+		EFB2_01824	0.22	-0.8
1,941,450	+		EFB2_01824	0.31	+3.0
1,941,460	+		EFB2_01824	0.32	-0.3
1,941,497	+		EFB2_01824	0.35	+0.5
1,941,604	+		EFB2_01824	0.44	-0.1
1,941,749	+		EFB2_01824	0.56	+0.7
1,941,797	+		EFB2_01824	0.60	-1.0
1,941,904	+		EFB2_01824	0.69	-0.8
1,942,017	+		EFB2_01824	0.78	-1.5
1,942,017	+		EFB2_01824	0.78	+0.0
1,942,017	+		EFB2_01824	0.78	-1.9
1,942,019	+		EFB2_01824	0.78	-1.8
1,942,078	+		EFB2_01824	0.83	+0.7
1,942,078	+		EFB2_01824	0.83	+1.1
1,942,082	+		EFB2_01824	0.84	-0.5
1,942,085	+		EFB2_01824	0.84	-1.5
1,942,183	+				+0.9
1,942,183	+				+0.3
1,942,183	+				-1.3
1,942,207	+				-0.5
1,942,241	+				+1.0
1,942,241	+				+0.4
1,942,241	+				-0.1
1,942,241	+				+0.9
1,942,241	+				-0.3
1,942,241	+				-1.5
1,942,241	+				+0.2
1,942,241	+				+0.0
1,942,278	+				+0.5
1,942,278	+				-0.8
1,942,291	+				+0.3
1,942,291	+				+2.7
1,942,291	+				+1.1
1,942,346	+		EFB2_01825	0.18	-2.5
1,942,346	+		EFB2_01825	0.18	+1.1
1,942,350	+		EFB2_01825	0.19	+0.4
1,942,350	+		EFB2_01825	0.19	+0.9
1,942,350	+		EFB2_01825	0.19	+1.2
1,942,386	+		EFB2_01825	0.28	+2.7
1,942,386	+		EFB2_01825	0.28	-2.1
1,942,386	+		EFB2_01825	0.28	-2.1
1,942,387	-		EFB2_01825	0.28	-2.0
1,942,390	+		EFB2_01825	0.29	+0.0
1,942,401	+		EFB2_01825	0.32	-0.8
1,942,412	+		EFB2_01825	0.35	+0.6
1,942,412	+		EFB2_01825	0.35	-1.7
1,942,412	+		EFB2_01825	0.35	+0.0
1,942,412	+		EFB2_01825	0.35	+0.9
1,942,412	+		EFB2_01825	0.35	+1.0
1,942,412	+		EFB2_01825	0.35	+0.7
1,942,412	+		EFB2_01825	0.35	+0.2
1,942,412	+		EFB2_01825	0.35	-2.0
1,942,412	+		EFB2_01825	0.35	+0.1
1,942,412	+		EFB2_01825	0.35	-0.1
1,942,412	+		EFB2_01825	0.35	+2.3
1,942,412	+		EFB2_01825	0.35	+0.9
1,942,412	+		EFB2_01825	0.35	-0.3
1,942,412	+		EFB2_01825	0.35	+0.0
1,942,413	-		EFB2_01825	0.35	-1.7
1,942,413	-		EFB2_01825	0.35	-2.3
1,942,413	-		EFB2_01825	0.35	-2.8
1,942,413	-		EFB2_01825	0.35	+1.5
1,942,413	-		EFB2_01825	0.35	-1.8
1,942,413	-		EFB2_01825	0.35	-2.0
1,942,413	-		EFB2_01825	0.35	+0.3
1,942,413	-		EFB2_01825	0.35	+0.0
1,942,479	+		EFB2_01825	0.51	+2.0
1,942,479	+		EFB2_01825	0.51	-1.4
1,942,480	-		EFB2_01825	0.51	+1.8
1,942,480	-		EFB2_01825	0.51	+1.0
1,942,493	+		EFB2_01825	0.54	+0.2
1,942,493	+		EFB2_01825	0.54	-2.2
1,942,493	+		EFB2_01825	0.54	-0.5
1,942,494	-		EFB2_01825	0.55	+1.5
1,942,548	+		EFB2_01825	0.68	-1.8
1,942,576	+		EFB2_01825	0.75	+0.0
1,942,576	+		EFB2_01825	0.75	-1.3
1,942,576	+		EFB2_01825	0.75	-1.4
1,942,576	+		EFB2_01825	0.75	-1.4
1,942,576	+		EFB2_01825	0.75	-1.0
1,942,577	-		EFB2_01825	0.75	-1.0
1,942,578	+		EFB2_01825	0.75	+0.7
1,942,578	+		EFB2_01825	0.75	-3.0
1,942,578	+		EFB2_01825	0.75	-1.7
1,942,578	+		EFB2_01825	0.75	+0.8
1,942,578	+		EFB2_01825	0.75	+0.7
1,942,578	+		EFB2_01825	0.75	-2.2
1,942,578	+		EFB2_01825	0.75	+0.8
1,942,578	+		EFB2_01825	0.75	-0.7
1,942,578	+		EFB2_01825	0.75	+0.0
1,942,578	+		EFB2_01825	0.75	-1.9
1,942,578	+		EFB2_01825	0.75	-0.2
1,942,578	+		EFB2_01825	0.75	+4.0
1,942,578	+		EFB2_01825	0.75	+0.4
1,942,578	+		EFB2_01825	0.75	-1.9
1,942,578	+		EFB2_01825	0.75	-0.5
1,942,578	+		EFB2_01825	0.75	-0.9
1,942,578	+		EFB2_01825	0.75	-1.8
1,942,578	+		EFB2_01825	0.75	-0.5
1,942,578	+		EFB2_01825	0.75	-4.1
1,942,578	+		EFB2_01825	0.75	+0.2
1,942,578	+		EFB2_01825	0.75	+0.5
1,942,578	+		EFB2_01825	0.75	+1.3
1,942,578	+		EFB2_01825	0.75	+0.8
1,942,578	+		EFB2_01825	0.75	-0.3
1,942,578	+		EFB2_01825	0.75	-1.0
1,942,578	+		EFB2_01825	0.75	+0.0
1,942,578	+		EFB2_01825	0.75	+0.0
1,942,578	+		EFB2_01825	0.75	-0.0
1,942,578	+		EFB2_01825	0.75	-2.8
1,942,578	+		EFB2_01825	0.75	-1.9
1,942,578	+		EFB2_01825	0.75	+0.5
1,942,578	+		EFB2_01825	0.75	+3.5
1,942,578	+		EFB2_01825	0.75	-0.3
1,942,578	+		EFB2_01825	0.75	+1.6
1,942,578	+		EFB2_01825	0.75	-0.8
1,942,578	+		EFB2_01825	0.75	+0.4
1,942,578	+		EFB2_01825	0.75	+1.5
1,942,578	+		EFB2_01825	0.75	-0.1
1,942,578	+		EFB2_01825	0.75	+1.1
1,942,578	+		EFB2_01825	0.75	+1.5
1,942,578	+		EFB2_01825	0.75	-0.4
1,942,578	+		EFB2_01825	0.75	-3.0
1,942,578	+		EFB2_01825	0.75	+3.0
1,942,578	+		EFB2_01825	0.75	+0.3
1,942,578	+		EFB2_01825	0.75	-0.4
1,942,578	+		EFB2_01825	0.75	+3.2
1,942,578	+		EFB2_01825	0.75	+2.4
1,942,578	+		EFB2_01825	0.75	+1.0
1,942,578	+		EFB2_01825	0.75	-1.4
1,942,578	+		EFB2_01825	0.75	+1.9
1,942,578	+		EFB2_01825	0.75	-2.3
1,942,578	+		EFB2_01825	0.75	+1.4
1,942,578	+		EFB2_01825	0.75	-2.1
1,942,578	+		EFB2_01825	0.75	+0.5
1,942,578	+		EFB2_01825	0.75	-1.3
1,942,578	+		EFB2_01825	0.75	+1.4
1,942,578	+		EFB2_01825	0.75	-0.1
1,942,578	+		EFB2_01825	0.75	-3.0
1,942,578	+		EFB2_01825	0.75	+1.8
1,942,578	+		EFB2_01825	0.75	+2.0
1,942,578	+		EFB2_01825	0.75	+3.2
1,942,579	-		EFB2_01825	0.75	+1.0
1,942,579	-		EFB2_01825	0.75	-1.1
1,942,582	+		EFB2_01825	0.76	-0.3
1,942,582	+		EFB2_01825	0.76	+1.0
1,942,582	+		EFB2_01825	0.76	+0.0
1,942,582	+		EFB2_01825	0.76	-0.3
1,942,582	+		EFB2_01825	0.76	+4.4
1,942,582	+		EFB2_01825	0.76	+2.0
1,942,582	+		EFB2_01825	0.76	+0.5
1,942,582	+		EFB2_01825	0.76	-2.9
1,942,582	+		EFB2_01825	0.76	-1.8
1,942,582	+		EFB2_01825	0.76	-2.3
1,942,582	+		EFB2_01825	0.76	-0.5
1,942,582	+		EFB2_01825	0.76	-2.1
1,942,582	+		EFB2_01825	0.76	-0.3
1,942,582	+		EFB2_01825	0.76	+0.5
1,942,582	+		EFB2_01825	0.76	-1.1
1,942,582	+		EFB2_01825	0.76	-1.8
1,942,582	+		EFB2_01825	0.76	+0.0
1,942,582	+		EFB2_01825	0.76	-2.3
1,942,582	+		EFB2_01825	0.76	-0.9
1,942,582	+		EFB2_01825	0.76	-0.6
1,942,582	+		EFB2_01825	0.76	-0.5
1,942,582	+		EFB2_01825	0.76	-0.5
1,942,582	+		EFB2_01825	0.76	-3.3
1,942,582	+		EFB2_01825	0.76	+0.4
1,942,582	+		EFB2_01825	0.76	+1.0
1,942,582	+		EFB2_01825	0.76	+1.6
1,942,582	+		EFB2_01825	0.76	-1.8
1,942,582	+		EFB2_01825	0.76	-0.1
1,942,582	+		EFB2_01825	0.76	-1.5
1,942,582	+		EFB2_01825	0.76	-0.5
1,942,582	+		EFB2_01825	0.76	+1.5
1,942,582	+		EFB2_01825	0.76	+1.4
1,942,582	+		EFB2_01825	0.76	-2.4
1,942,582	+		EFB2_01825	0.76	-3.1
1,942,582	+		EFB2_01825	0.76	+1.0
1,942,582	+		EFB2_01825	0.76	+1.0
1,942,582	+		EFB2_01825	0.76	+0.3
1,942,583	-		EFB2_01825	0.76	-0.8
1,942,583	-		EFB2_01825	0.76	+0.0
1,942,583	-		EFB2_01825	0.76	-1.8
1,942,583	-		EFB2_01825	0.76	-0.3
1,942,583	-		EFB2_01825	0.76	-2.5
1,942,612	+		EFB2_01825	0.84	-1.2
1,942,612	+		EFB2_01825	0.84	+2.0
1,942,612	+		EFB2_01825	0.84	+2.2
1,942,612	+		EFB2_01825	0.84	-2.7
1,942,612	+		EFB2_01825	0.84	+1.1
1,942,612	+		EFB2_01825	0.84	+1.0
1,942,612	+		EFB2_01825	0.84	-1.1
1,942,654	+				-1.1
1,942,654	+				+0.5
1,942,654	+				+1.3
1,942,655	-				+0.0
1,942,666	+				+0.9
1,942,666	+				+0.8
1,942,667	-				-0.0
1,942,667	-				-0.8
1,942,674	+				+0.2
1,942,674	+				+1.2
1,942,676	+				-0.8
1,942,677	-				+0.0
1,942,684	+				+1.0
1,942,696	+				-0.1
1,942,704	+				-1.6
1,942,704	+				-0.5
1,942,704	+				-0.8
1,942,704	+				-3.6
1,942,705	-				-0.5
1,942,705	-				-0.5
1,942,705	-				-1.8
1,942,705	-				-2.4
1,942,709	+				+1.2
1,942,709	+				+0.6
1,942,709	+				-0.2
1,942,709	+				-1.5
1,942,709	+				-0.5
1,942,709	+				-0.6
1,942,709	+				+0.3
1,942,709	+				+2.0
1,942,709	+				+0.0
1,942,710	-				-2.1
1,942,710	-				-3.2
1,942,714	+				-0.3
1,942,714	+				+0.3
1,942,714	+				-1.2
1,942,714	+				+0.3
1,942,714	+				-1.9
1,942,714	+				-2.0
1,942,714	+				-2.0
1,942,714	+				-2.2
1,942,714	+				-0.0
1,942,714	+				-1.1
1,942,715	-				-0.3
1,942,715	-				-0.0
1,942,715	-				-0.0
1,942,715	-				-1.0
1,942,715	-				-2.0
1,942,715	-				+0.3
1,942,716	+				+0.4
1,942,716	+				-2.3
1,942,716	+				-1.0
1,942,716	+				+0.6
1,942,716	+				-1.7
1,942,716	+				-0.1
1,942,716	+				-2.0
1,942,716	+				+0.5
1,942,716	+				+1.5
1,942,716	+				-0.5
1,942,716	+				-0.4
1,942,716	+				-0.1
1,942,716	+				+0.5
1,942,716	+				+0.1
1,942,716	+				-1.1
1,942,716	+				+2.6
1,942,716	+				-0.8
1,942,716	+				+0.3
1,942,716	+				+1.4
1,942,716	+				-2.1
1,942,716	+				+0.5
1,942,716	+				-2.7
1,942,716	+				+1.4
1,942,717	-				-2.8
1,942,717	-				-0.5
1,942,717	-				+1.8
1,942,717	-				-0.5
1,942,717	-				+0.1
1,942,717	-				-3.3
1,942,717	-				+1.1
1,942,717	-				+1.8
1,942,736	+				-1.8
1,942,736	+				-0.9
1,942,736	+				-0.1
1,942,736	+				+1.8
1,942,736	+				+2.0
1,942,736	+				-0.5
1,942,737	-				+0.2
1,942,737	-				+1.0
1,942,737	-				+0.8
1,942,737	-				+0.9
1,942,737	-				+1.0
1,942,737	-				+0.5
1,942,784	+				-2.7
1,942,785	-				+0.2
1,942,785	-				+1.9
1,942,785	-				+0.9
1,942,869	-				+1.0
1,942,870	+				-1.9
1,942,870	+				+0.6
1,942,870	+				-0.5
1,942,870	+				+0.2
1,942,870	+				-1.4
1,942,870	+				-1.5
1,942,870	+				+1.1
1,942,870	+				-2.1
1,942,871	-				+2.0
1,942,871	-				-0.8
1,942,871	-				-0.5
1,942,871	-				+1.2
1,942,879	+				+0.0
1,942,949	+		EFB2_01826	0.11	-1.9
1,942,949	+		EFB2_01826	0.11	+3.0
1,942,949	+		EFB2_01826	0.11	-0.8
1,942,949	+		EFB2_01826	0.11	+0.0
1,942,949	+		EFB2_01826	0.11	+0.4
1,942,949	+		EFB2_01826	0.11	-1.8
1,942,949	+		EFB2_01826	0.11	-0.4
1,942,950	-		EFB2_01826	0.11	-0.5
1,942,950	-		EFB2_01826	0.11	-0.8
1,942,950	-		EFB2_01826	0.11	-1.0
1,942,952	+		EFB2_01826	0.12	+0.0
1,942,952	+		EFB2_01826	0.12	+0.5
1,942,952	+		EFB2_01826	0.12	+0.5
1,942,953	-		EFB2_01826	0.12	+1.2
1,942,953	-		EFB2_01826	0.12	+1.5
1,942,954	+		EFB2_01826	0.12	-1.7
1,942,954	+		EFB2_01826	0.12	+1.7
1,942,954	+		EFB2_01826	0.12	+0.1
1,942,954	+		EFB2_01826	0.12	-0.8
1,942,954	+		EFB2_01826	0.12	+0.5
1,942,954	+		EFB2_01826	0.12	+0.2
1,942,955	-		EFB2_01826	0.12	+0.0
1,942,955	-		EFB2_01826	0.12	+2.0
1,942,955	-		EFB2_01826	0.12	+1.5
1,942,955	-		EFB2_01826	0.12	-0.3
1,943,039	-		EFB2_01826	0.18	-0.1
1,943,039	-		EFB2_01826	0.18	+2.0
1,943,039	-		EFB2_01826	0.18	+0.9
1,943,039	-		EFB2_01826	0.18	+0.3
1,943,039	-		EFB2_01826	0.18	+2.0
1,943,058	-		EFB2_01826	0.19	-0.5
1,943,058	-		EFB2_01826	0.19	+0.9
1,943,092	+		EFB2_01826	0.21	+1.7
1,943,092	+		EFB2_01826	0.21	-0.9
1,943,092	+		EFB2_01826	0.21	+0.5
1,943,092	+		EFB2_01826	0.21	-1.3
1,943,093	-		EFB2_01826	0.22	-0.3
1,943,150	-		EFB2_01826	0.26	+1.8
1,943,209	+		EFB2_01826	0.30	-0.5
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